Wall clock time and date at job start Wed Apr 1 2020 05:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50703 * 109.46907 * 2 1 4 4 C 1.35317 * 126.67388 * 90.28201 * 3 2 1 5 5 C 1.42268 * 103.92283 * 180.15308 * 4 3 2 6 6 C 1.48334 * 126.93233 * 179.88960 * 5 4 3 7 7 O 1.21494 * 120.00260 * 6.25406 * 6 5 4 8 8 N 1.34779 * 119.99848 * 186.25634 * 6 5 4 9 9 C 1.46929 * 120.62835 * 355.09789 * 8 6 5 10 10 C 1.53189 * 108.77797 * 126.41428 * 9 8 6 11 11 C 1.53040 * 109.30999 * 54.63088 * 10 9 8 12 12 C 1.53038 * 109.54196 * 298.63650 * 11 10 9 13 13 H 1.09006 * 109.49345 * 301.38283 * 12 11 10 14 14 C 1.53001 * 109.49999 * 181.32176 * 12 11 10 15 15 H 1.09004 * 110.90747 * 302.44326 * 14 12 11 16 16 C 1.55148 * 111.00677 * 66.34458 * 14 12 11 17 17 C 1.54323 * 102.94056 * 153.57559 * 16 14 12 18 18 N 1.47286 * 107.31100 * 337.82267 * 17 16 14 19 19 C 1.36936 * 125.79772 * 178.92490 * 18 17 16 20 20 H 1.07998 * 119.99674 * 180.02562 * 19 18 17 21 21 C 1.38808 * 119.99773 * 359.97438 * 19 18 17 22 22 N 1.31622 * 120.00315 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99859 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47032 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.47368 * 120.00173 * 23 21 19 26 26 H 1.48498 * 109.46958 * 239.99785 * 23 21 19 27 27 C 1.47431 * 108.55468 * 358.91980 * 18 17 16 28 28 C 1.46924 * 120.63213 * 175.11657 * 8 6 5 29 29 N 1.30983 * 106.12544 * 359.62472 * 5 4 3 30 30 O 1.20903 * 111.43810 * 0.24584 * 29 5 4 31 31 H 1.08995 * 109.46903 * 60.00872 * 1 2 3 32 32 H 1.09002 * 109.46617 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47137 * 300.00091 * 1 2 3 34 34 H 1.08999 * 109.47859 * 239.99785 * 2 1 3 35 35 H 1.09002 * 109.47534 * 119.99082 * 2 1 3 36 36 H 1.07998 * 128.02987 * 0.02562 * 4 3 2 37 37 H 1.09005 * 109.58776 * 6.62196 * 9 8 6 38 38 H 1.09011 * 109.58305 * 246.20269 * 9 8 6 39 39 H 1.08994 * 109.49420 * 294.68404 * 10 9 8 40 40 H 1.08997 * 109.49545 * 174.58329 * 10 9 8 41 41 H 1.09000 * 109.45599 * 178.61470 * 11 10 9 42 42 H 1.08997 * 109.44832 * 58.65215 * 11 10 9 43 43 H 1.08998 * 110.72747 * 271.94198 * 16 14 12 44 44 H 1.09006 * 110.71828 * 35.21952 * 16 14 12 45 45 H 1.09010 * 109.88133 * 97.23093 * 17 16 14 46 46 H 1.09001 * 109.88559 * 218.23133 * 17 16 14 47 47 H 0.96994 * 120.00216 * 179.97438 * 22 21 19 48 48 H 1.09002 * 110.37082 * 265.26361 * 27 18 17 49 49 H 1.08997 * 110.36377 * 143.04957 * 27 18 17 50 50 H 1.09001 * 109.58470 * 113.80016 * 28 8 6 51 51 H 1.09003 * 109.58425 * 353.37751 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3067 2.1811 1.0853 5 6 2.7380 3.4202 0.5351 6 6 3.1646 4.6275 1.2839 7 8 3.2770 4.5844 2.4929 8 7 3.4275 5.7723 0.6231 9 6 3.4003 5.8122 -0.8454 10 6 2.4623 6.9384 -1.2909 11 6 2.8989 8.2501 -0.6344 12 6 2.8053 8.1170 0.8873 13 1 1.7814 7.8706 1.1686 14 6 3.2105 9.4393 1.5415 15 1 4.2175 9.7293 1.2416 16 6 2.1881 10.5590 1.2124 17 6 2.3305 11.5204 2.4111 18 7 2.9017 10.7475 3.5273 19 6 3.2047 11.2385 4.7691 20 1 3.6225 10.5853 5.5208 21 6 2.9758 12.5760 5.0614 22 7 2.4679 13.3725 4.1448 23 14 3.3897 13.2460 6.7553 24 1 3.9446 12.1556 7.5969 25 1 4.3941 14.3323 6.6261 26 1 2.1590 13.7828 7.3896 27 6 3.0932 9.3546 3.0839 28 6 3.7472 7.0041 1.3574 29 7 2.6877 3.2777 -0.7660 30 8 2.2986 2.1755 -1.0751 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3632 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8899 34 1 1.8935 -0.5138 -0.8899 35 1 1.8935 -0.5137 0.8901 36 1 2.2170 1.9106 2.1270 37 1 3.0361 4.8595 -1.2302 38 1 4.4047 6.0017 -1.2245 39 1 1.4419 6.7026 -0.9891 40 1 2.5070 7.0416 -2.3750 41 1 2.2480 9.0578 -0.9690 42 1 3.9279 8.4723 -0.9169 43 1 2.4523 11.0611 0.2817 44 1 1.1771 10.1548 1.1603 45 1 2.9976 12.3421 2.1501 46 1 1.3524 11.9119 2.6907 47 1 2.3076 14.3070 4.3491 48 1 2.2347 8.7451 3.3661 49 1 4.0071 8.9426 3.5117 50 1 4.7797 7.2909 1.1580 51 1 3.6118 6.8379 2.4262 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961280288.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:53 Heat of formation + Delta-G solvation = 51.967710 kcal Electronic energy + Delta-G solvation = -30986.777288 eV Core-core repulsion = 26890.183997 eV Total energy + Delta-G solvation = -4096.593291 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -45.43381 -40.33565 -38.31211 -36.71115 -35.38768 -34.45035 -33.41733 -32.25566 -31.17077 -30.55171 -29.05628 -27.09452 -26.41828 -24.74083 -24.49965 -24.06000 -22.70719 -22.57641 -20.75717 -19.86188 -19.48142 -19.18908 -18.15067 -17.70603 -17.14798 -16.77870 -15.94148 -15.50185 -15.10586 -14.96237 -14.77410 -14.49644 -14.40085 -13.99235 -13.87137 -13.82747 -13.51336 -13.20386 -13.12274 -13.03872 -12.50162 -12.30395 -12.21721 -12.02782 -11.80178 -11.70215 -11.52843 -11.15380 -10.96867 -10.86895 -10.79277 -10.77814 -10.61399 -10.53669 -10.29966 -10.02938 -9.93590 -9.85291 -9.75426 -9.70271 -9.51473 -8.73438 -8.54405 -6.75048 -5.64882 -2.97453 0.77046 1.33724 2.44525 2.69477 2.95566 3.43896 3.49466 3.52067 3.59057 3.99344 4.43591 4.49503 4.55495 4.61042 4.64795 4.76183 4.85492 4.87937 4.89960 4.99685 5.11332 5.20992 5.26958 5.40157 5.43906 5.50666 5.51068 5.53580 5.64782 5.66732 5.70452 5.73026 5.79946 5.83462 5.91741 5.99863 6.05880 6.10553 6.29583 6.31611 6.44274 6.50223 6.62142 6.65705 6.80812 7.04932 7.15074 7.63530 7.64162 7.69728 7.89255 7.91411 8.32753 9.29065 9.89726 10.56873 11.47264 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019205 B = 0.002156 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.580681 B =12981.666301 C =13852.847222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.043 4.043 3 C -0.026 4.026 4 C -0.182 4.182 5 C -0.011 4.011 6 C 0.592 3.408 7 O -0.520 6.520 8 N -0.593 5.593 9 C 0.075 3.925 10 C -0.131 4.131 11 C -0.115 4.115 12 C -0.086 4.086 13 H 0.073 0.927 14 C -0.095 4.095 15 H 0.075 0.925 16 C -0.135 4.135 17 C 0.177 3.823 18 N -0.607 5.607 19 C -0.223 4.223 20 H 0.078 0.922 21 C -0.012 4.012 22 N -0.923 5.923 23 Si 0.911 3.089 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 C 0.140 3.860 28 C 0.116 3.884 29 N -0.331 5.331 30 O 0.110 5.890 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.091 0.909 35 H 0.100 0.900 36 H 0.181 0.819 37 H 0.124 0.876 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.064 0.936 43 H 0.057 0.943 44 H 0.054 0.946 45 H 0.044 0.956 46 H 0.040 0.960 47 H 0.250 0.750 48 H 0.017 0.983 49 H 0.037 0.963 50 H 0.072 0.928 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.878 -26.631 -15.760 31.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.081 4.081 3 C -0.090 4.090 4 C -0.204 4.204 5 C -0.170 4.170 6 C 0.378 3.622 7 O -0.395 6.395 8 N -0.325 5.325 9 C -0.048 4.048 10 C -0.169 4.169 11 C -0.153 4.153 12 C -0.106 4.106 13 H 0.092 0.908 14 C -0.115 4.115 15 H 0.093 0.907 16 C -0.174 4.174 17 C 0.052 3.948 18 N -0.333 5.333 19 C -0.352 4.352 20 H 0.096 0.904 21 C -0.208 4.208 22 N -0.571 5.571 23 Si 0.742 3.258 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.218 1.218 27 C 0.013 3.987 28 C -0.006 4.006 29 N -0.036 5.036 30 O 0.040 5.960 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.110 0.890 35 H 0.118 0.882 36 H 0.198 0.802 37 H 0.141 0.859 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.082 0.918 43 H 0.076 0.924 44 H 0.073 0.927 45 H 0.063 0.937 46 H 0.058 0.942 47 H 0.061 0.939 48 H 0.035 0.965 49 H 0.055 0.945 50 H 0.090 0.910 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.518 -25.603 -15.966 30.211 hybrid contribution 0.092 0.324 1.542 1.579 sum -1.425 -25.279 -14.424 29.139 Atomic orbital electron populations 1.21818 0.93223 1.02959 1.03087 1.20182 0.96840 0.86005 1.05068 1.24523 1.01927 0.97108 0.85395 1.22445 1.04867 0.91479 1.01625 1.23568 1.05574 0.97833 0.90010 1.17004 0.77848 0.81207 0.86191 1.90823 1.52470 1.83357 1.12815 1.48011 1.67571 1.09183 1.07731 1.22624 1.00583 1.02743 0.78846 1.21888 0.99470 0.95110 1.00456 1.21603 1.01918 0.96918 0.94847 1.21475 0.99649 0.94433 0.94999 0.90827 1.22316 0.99442 0.92883 0.96810 0.90689 1.22880 0.97588 0.97207 0.99703 1.21169 0.98242 0.91463 0.83913 1.44552 1.74230 1.03775 1.10736 1.19126 1.35048 0.93138 0.87854 0.90425 1.24801 1.01587 0.96272 0.98099 1.69980 1.50077 1.04854 1.32237 0.86048 0.77498 0.78742 0.83546 1.20503 1.21832 1.21829 1.21587 0.97664 0.88347 0.91061 1.21880 0.98812 0.81875 0.97998 1.73838 1.15498 0.98913 1.15364 1.84786 1.59923 1.17440 1.33805 0.91932 0.91051 0.91871 0.89048 0.88170 0.80178 0.85882 0.91297 0.91768 0.90726 0.91085 0.91761 0.92386 0.92688 0.93734 0.94177 0.93930 0.96502 0.94499 0.90972 0.88322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.51 9.89 37.16 0.37 -0.14 16 2 C -0.04 -0.15 6.50 -27.88 -0.18 -0.33 16 3 C -0.03 -0.19 6.73 -35.35 -0.24 -0.43 16 4 C -0.18 -1.70 10.93 -39.08 -0.43 -2.13 16 5 C -0.01 -0.14 6.95 -82.53 -0.57 -0.71 16 6 C 0.59 8.66 7.72 -12.10 -0.09 8.57 16 7 O -0.52 -9.14 16.39 5.37 0.09 -9.06 16 8 N -0.59 -7.93 2.97 -173.69 -0.52 -8.45 16 9 C 0.07 0.82 6.33 -3.71 -0.02 0.79 16 10 C -0.13 -1.35 6.08 -26.61 -0.16 -1.51 16 11 C -0.12 -1.35 5.03 -26.69 -0.13 -1.48 16 12 C -0.09 -1.22 1.84 -90.50 -0.17 -1.39 16 13 H 0.07 1.14 8.11 -51.93 -0.42 0.72 16 14 C -0.09 -1.65 2.56 -88.48 -0.23 -1.87 16 15 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 16 C -0.14 -2.55 5.57 -24.90 -0.14 -2.69 16 17 C 0.18 4.42 5.38 -2.92 -0.02 4.41 16 18 N -0.61 -16.12 3.40 -169.85 -0.58 -16.70 16 19 C -0.22 -6.47 10.28 -15.06 -0.15 -6.62 16 20 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 21 C -0.01 -0.35 5.49 -17.43 -0.10 -0.44 16 22 N -0.92 -27.92 10.34 55.49 0.57 -27.35 16 23 Si 0.91 22.82 29.55 -169.99 -5.02 17.79 16 24 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 26 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 27 C 0.14 3.01 5.75 -2.53 -0.01 2.99 16 28 C 0.12 1.65 5.39 -3.71 -0.02 1.63 16 29 N -0.33 -3.56 8.51 33.29 0.28 -3.28 16 30 O 0.11 0.98 11.18 17.23 0.19 1.17 16 31 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.07 0.14 8.14 -51.93 -0.42 -0.28 16 33 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 34 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 35 H 0.10 0.21 8.14 -51.93 -0.42 -0.21 16 36 H 0.18 1.46 8.06 -52.49 -0.42 1.03 16 37 H 0.12 1.33 3.76 -74.15 -0.28 1.05 16 38 H 0.07 0.69 8.14 -51.92 -0.42 0.27 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.84 7.45 -51.93 -0.39 0.45 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.06 0.98 8.11 -51.93 -0.42 0.56 16 44 H 0.05 0.99 8.01 -51.93 -0.42 0.58 16 45 H 0.04 1.22 7.39 -51.92 -0.38 0.84 16 46 H 0.04 1.11 7.52 -51.93 -0.39 0.72 16 47 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 48 H 0.02 0.38 8.04 -51.93 -0.42 -0.04 16 49 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 50 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 51 H 0.10 1.61 6.45 -51.93 -0.34 1.28 16 LS Contribution 398.83 15.07 6.01 6.01 Total: -1.00 -33.96 398.83 -9.76 -43.72 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -8.49 Total: -2.50 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -2.30 Total: -1.36 kcal Atomic # 7 Polarization: -55.54 SS G_CDS: -0.24 Total: -55.78 kcal Atomic # 8 Polarization: -8.16 SS G_CDS: 0.28 Total: -7.88 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.02 Total: 17.79 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.96 -9.76 -43.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961280288.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.688 kcal (2) G-P(sol) polarization free energy of solvation -33.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds