Wall clock time and date at job start Wed Apr 1 2020 05:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50703 * 109.46907 * 2 1 4 4 C 1.35317 * 126.67388 * 90.28201 * 3 2 1 5 5 C 1.42268 * 103.92283 * 180.15308 * 4 3 2 6 6 C 1.48334 * 126.93233 * 179.88960 * 5 4 3 7 7 O 1.21494 * 120.00260 * 6.25406 * 6 5 4 8 8 N 1.34779 * 119.99848 * 186.25634 * 6 5 4 9 9 C 1.46929 * 120.62835 * 355.09789 * 8 6 5 10 10 C 1.53189 * 108.77797 * 126.41428 * 9 8 6 11 11 C 1.53040 * 109.30999 * 54.63088 * 10 9 8 12 12 C 1.53038 * 109.54196 * 298.63650 * 11 10 9 13 13 H 1.09006 * 109.49345 * 301.38283 * 12 11 10 14 14 C 1.53001 * 109.49999 * 181.32176 * 12 11 10 15 15 H 1.09004 * 110.90747 * 302.44326 * 14 12 11 16 16 C 1.55148 * 111.00677 * 66.34458 * 14 12 11 17 17 C 1.54323 * 102.94056 * 153.57559 * 16 14 12 18 18 N 1.47286 * 107.31100 * 337.82267 * 17 16 14 19 19 C 1.36936 * 125.79772 * 178.92490 * 18 17 16 20 20 H 1.07998 * 119.99674 * 180.02562 * 19 18 17 21 21 C 1.38808 * 119.99773 * 359.97438 * 19 18 17 22 22 N 1.31622 * 120.00315 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99859 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47032 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.47368 * 120.00173 * 23 21 19 26 26 H 1.48498 * 109.46958 * 239.99785 * 23 21 19 27 27 C 1.47431 * 108.55468 * 358.91980 * 18 17 16 28 28 C 1.46924 * 120.63213 * 175.11657 * 8 6 5 29 29 N 1.30983 * 106.12544 * 359.62472 * 5 4 3 30 30 O 1.20903 * 111.43810 * 0.24584 * 29 5 4 31 31 H 1.08995 * 109.46903 * 60.00872 * 1 2 3 32 32 H 1.09002 * 109.46617 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47137 * 300.00091 * 1 2 3 34 34 H 1.08999 * 109.47859 * 239.99785 * 2 1 3 35 35 H 1.09002 * 109.47534 * 119.99082 * 2 1 3 36 36 H 1.07998 * 128.02987 * 0.02562 * 4 3 2 37 37 H 1.09005 * 109.58776 * 6.62196 * 9 8 6 38 38 H 1.09011 * 109.58305 * 246.20269 * 9 8 6 39 39 H 1.08994 * 109.49420 * 294.68404 * 10 9 8 40 40 H 1.08997 * 109.49545 * 174.58329 * 10 9 8 41 41 H 1.09000 * 109.45599 * 178.61470 * 11 10 9 42 42 H 1.08997 * 109.44832 * 58.65215 * 11 10 9 43 43 H 1.08998 * 110.72747 * 271.94198 * 16 14 12 44 44 H 1.09006 * 110.71828 * 35.21952 * 16 14 12 45 45 H 1.09010 * 109.88133 * 97.23093 * 17 16 14 46 46 H 1.09001 * 109.88559 * 218.23133 * 17 16 14 47 47 H 0.96994 * 120.00216 * 179.97438 * 22 21 19 48 48 H 1.09002 * 110.37082 * 265.26361 * 27 18 17 49 49 H 1.08997 * 110.36377 * 143.04957 * 27 18 17 50 50 H 1.09001 * 109.58470 * 113.80016 * 28 8 6 51 51 H 1.09003 * 109.58425 * 353.37751 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3067 2.1811 1.0853 5 6 2.7380 3.4202 0.5351 6 6 3.1646 4.6275 1.2839 7 8 3.2770 4.5844 2.4929 8 7 3.4275 5.7723 0.6231 9 6 3.4003 5.8122 -0.8454 10 6 2.4623 6.9384 -1.2909 11 6 2.8989 8.2501 -0.6344 12 6 2.8053 8.1170 0.8873 13 1 1.7814 7.8706 1.1686 14 6 3.2105 9.4393 1.5415 15 1 4.2175 9.7293 1.2416 16 6 2.1881 10.5590 1.2124 17 6 2.3305 11.5204 2.4111 18 7 2.9017 10.7475 3.5273 19 6 3.2047 11.2385 4.7691 20 1 3.6225 10.5853 5.5208 21 6 2.9758 12.5760 5.0614 22 7 2.4679 13.3725 4.1448 23 14 3.3897 13.2460 6.7553 24 1 3.9446 12.1556 7.5969 25 1 4.3941 14.3323 6.6261 26 1 2.1590 13.7828 7.3896 27 6 3.0932 9.3546 3.0839 28 6 3.7472 7.0041 1.3574 29 7 2.6877 3.2777 -0.7660 30 8 2.2986 2.1755 -1.0751 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3632 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8899 34 1 1.8935 -0.5138 -0.8899 35 1 1.8935 -0.5137 0.8901 36 1 2.2170 1.9106 2.1270 37 1 3.0361 4.8595 -1.2302 38 1 4.4047 6.0017 -1.2245 39 1 1.4419 6.7026 -0.9891 40 1 2.5070 7.0416 -2.3750 41 1 2.2480 9.0578 -0.9690 42 1 3.9279 8.4723 -0.9169 43 1 2.4523 11.0611 0.2817 44 1 1.1771 10.1548 1.1603 45 1 2.9976 12.3421 2.1501 46 1 1.3524 11.9119 2.6907 47 1 2.3076 14.3070 4.3491 48 1 2.2347 8.7451 3.3661 49 1 4.0071 8.9426 3.5117 50 1 4.7797 7.2909 1.1580 51 1 3.6118 6.8379 2.4262 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961280288.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:52 Heat of formation + Delta-G solvation = 32.462879 kcal Electronic energy + Delta-G solvation = -30987.623081 eV Core-core repulsion = 26890.183997 eV Total energy + Delta-G solvation = -4097.439084 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -46.19960 -41.44233 -39.73649 -38.13143 -35.86092 -35.56487 -34.76813 -33.61509 -32.54293 -31.24104 -30.84679 -28.72027 -27.52362 -26.41656 -25.14161 -24.99376 -23.94324 -23.34438 -21.91744 -21.71589 -20.89067 -20.11011 -18.93256 -18.85971 -18.52662 -17.99394 -17.08182 -16.89273 -16.57214 -16.13393 -15.65086 -15.58389 -15.53594 -15.36656 -15.01044 -14.74202 -14.41453 -14.26171 -14.10660 -14.06059 -13.83661 -13.62244 -13.50660 -13.40925 -13.03663 -12.79318 -12.76603 -12.46131 -12.29239 -12.17693 -12.01065 -11.89380 -11.85529 -11.76331 -11.67243 -11.63572 -11.59197 -11.42033 -11.17569 -11.00291 -10.74319 -10.48603 -9.81610 -8.91890 -7.87706 -5.23136 -0.05196 0.62073 1.42417 1.43886 1.54585 1.56557 1.92949 1.96789 2.46939 2.71141 3.29572 3.33255 3.56518 3.57320 3.78231 3.80534 3.91033 3.92669 4.02189 4.13813 4.18192 4.24191 4.25972 4.35890 4.38717 4.44405 4.51503 4.61562 4.65042 4.70112 4.74111 4.82262 4.86047 4.91190 4.94634 4.97381 5.06492 5.07570 5.08262 5.13336 5.16285 5.28659 5.35378 5.41444 5.42264 5.44776 5.50185 5.66715 5.76278 6.10866 6.17920 6.72642 7.01141 7.08296 7.75277 8.40756 9.23101 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019205 B = 0.002156 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.580681 B =12981.666301 C =13852.847222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.041 4.041 3 C -0.003 4.003 4 C -0.199 4.199 5 C -0.037 4.037 6 C 0.586 3.414 7 O -0.563 6.563 8 N -0.591 5.591 9 C 0.071 3.929 10 C -0.124 4.124 11 C -0.111 4.111 12 C -0.073 4.073 13 H 0.060 0.940 14 C -0.075 4.075 15 H 0.082 0.918 16 C -0.118 4.118 17 C 0.182 3.818 18 N -0.630 5.630 19 C -0.243 4.243 20 H 0.078 0.922 21 C -0.069 4.069 22 N -0.951 5.951 23 Si 0.980 3.020 24 H -0.268 1.268 25 H -0.289 1.289 26 H -0.291 1.291 27 C 0.135 3.865 28 C 0.118 3.882 29 N -0.335 5.335 30 O 0.120 5.880 31 H 0.056 0.944 32 H 0.089 0.911 33 H 0.052 0.948 34 H 0.113 0.887 35 H 0.119 0.881 36 H 0.187 0.813 37 H 0.128 0.872 38 H 0.084 0.916 39 H 0.055 0.945 40 H 0.103 0.897 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.087 0.913 44 H 0.065 0.935 45 H 0.013 0.987 46 H 0.002 0.998 47 H 0.247 0.753 48 H 0.010 0.990 49 H 0.036 0.964 50 H 0.084 0.916 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.666 -28.903 -17.897 34.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.079 4.079 3 C -0.066 4.066 4 C -0.222 4.222 5 C -0.194 4.194 6 C 0.372 3.628 7 O -0.441 6.441 8 N -0.323 5.323 9 C -0.050 4.050 10 C -0.162 4.162 11 C -0.149 4.149 12 C -0.093 4.093 13 H 0.079 0.921 14 C -0.095 4.095 15 H 0.100 0.900 16 C -0.156 4.156 17 C 0.057 3.943 18 N -0.356 5.356 19 C -0.372 4.372 20 H 0.096 0.904 21 C -0.262 4.262 22 N -0.600 5.600 23 Si 0.808 3.192 24 H -0.192 1.192 25 H -0.215 1.215 26 H -0.218 1.218 27 C 0.010 3.990 28 C -0.004 4.004 29 N -0.039 5.039 30 O 0.047 5.953 31 H 0.075 0.925 32 H 0.108 0.892 33 H 0.071 0.929 34 H 0.131 0.869 35 H 0.137 0.863 36 H 0.204 0.796 37 H 0.145 0.855 38 H 0.102 0.898 39 H 0.074 0.926 40 H 0.121 0.879 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.105 0.895 44 H 0.084 0.916 45 H 0.031 0.969 46 H 0.020 0.980 47 H 0.056 0.944 48 H 0.028 0.972 49 H 0.054 0.946 50 H 0.102 0.898 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.298 -27.887 -18.141 33.294 hybrid contribution -0.010 0.927 2.195 2.383 sum -1.308 -26.961 -15.946 31.351 Atomic orbital electron populations 1.21830 0.92981 1.03968 1.02305 1.20451 0.96814 0.83551 1.07054 1.25129 0.99658 0.97930 0.83922 1.22633 1.05805 0.91050 1.02700 1.23369 1.07512 0.97781 0.90737 1.17403 0.77250 0.82156 0.85959 1.90786 1.54454 1.84240 1.14637 1.48108 1.66852 1.08468 1.08840 1.22836 1.01720 1.03430 0.77029 1.21857 0.98591 0.93741 1.01980 1.21589 1.03030 0.98035 0.92196 1.21311 0.98638 0.92291 0.97016 0.92140 1.22171 0.99517 0.94209 0.93579 0.89966 1.22732 0.98738 0.96211 0.97962 1.20981 0.95184 0.92209 0.85896 1.44898 1.74249 1.05861 1.10590 1.19489 1.34926 0.93613 0.89179 0.90418 1.25685 1.01864 0.96592 1.02029 1.70199 1.50996 1.04771 1.34049 0.84984 0.77051 0.78062 0.79091 1.19203 1.21540 1.21774 1.21744 0.97149 0.85830 0.94277 1.21732 0.99451 0.82519 0.96722 1.73788 1.15700 0.99784 1.14611 1.84758 1.59175 1.17048 1.34278 0.92501 0.89172 0.92911 0.86906 0.86323 0.79582 0.85515 0.89820 0.92640 0.87869 0.90432 0.90446 0.89467 0.91647 0.96923 0.98003 0.94364 0.97182 0.94583 0.89812 0.91104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.64 9.89 71.98 0.71 0.07 16 2 C -0.04 -0.16 6.50 29.85 0.19 0.04 16 3 C 0.00 -0.04 6.73 25.01 0.17 0.13 16 4 C -0.20 -3.60 10.93 22.60 0.25 -3.35 16 5 C -0.04 -0.88 6.95 42.96 0.30 -0.58 16 6 C 0.59 17.44 7.72 86.93 0.67 18.11 16 7 O -0.56 -20.76 16.39 -3.70 -0.06 -20.82 16 8 N -0.59 -15.53 2.97 -821.74 -2.44 -17.97 16 9 C 0.07 1.40 6.33 86.36 0.55 1.95 16 10 C -0.12 -2.17 6.08 30.67 0.19 -1.99 16 11 C -0.11 -2.26 5.03 30.62 0.15 -2.11 16 12 C -0.07 -1.99 1.84 -10.72 -0.02 -2.01 16 13 H 0.06 1.84 8.11 -2.38 -0.02 1.82 16 14 C -0.07 -2.55 2.56 -9.40 -0.02 -2.58 16 15 H 0.08 2.73 8.14 -2.38 -0.02 2.71 16 16 C -0.12 -4.36 5.57 31.78 0.18 -4.18 16 17 C 0.18 9.41 5.38 86.68 0.47 9.88 16 18 N -0.63 -34.54 3.40 -691.29 -2.35 -36.90 16 19 C -0.24 -14.49 10.28 84.03 0.86 -13.63 16 20 H 0.08 4.49 7.83 -2.91 -0.02 4.47 16 21 C -0.07 -4.12 5.49 84.86 0.47 -3.65 16 22 N -0.95 -59.46 10.34 21.65 0.22 -59.23 16 23 Si 0.98 47.88 29.55 68.60 2.03 49.90 16 24 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 25 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 26 H -0.29 -14.10 7.11 99.48 0.71 -13.40 16 27 C 0.14 5.96 5.75 86.85 0.50 6.46 16 28 C 0.12 3.33 5.39 86.36 0.47 3.79 16 29 N -0.34 -6.76 8.51 -49.52 -0.42 -7.19 16 30 O 0.12 1.89 11.18 71.84 0.80 2.69 16 31 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.09 0.08 8.14 -2.39 -0.02 0.06 16 33 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 34 H 0.11 0.03 8.14 -2.39 -0.02 0.01 16 35 H 0.12 0.10 8.14 -2.39 -0.02 0.08 16 36 H 0.19 2.99 8.06 -2.91 -0.02 2.97 16 37 H 0.13 2.49 3.76 -46.26 -0.17 2.32 16 38 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 39 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.10 1.30 8.14 -2.39 -0.02 1.29 16 41 H 0.08 1.53 7.45 -2.39 -0.02 1.52 16 42 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.09 2.74 8.11 -2.39 -0.02 2.72 16 44 H 0.06 2.29 8.01 -2.38 -0.02 2.27 16 45 H 0.01 0.72 7.39 -2.38 -0.02 0.70 16 46 H 0.00 0.10 7.52 -2.39 -0.02 0.08 16 47 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 48 H 0.01 0.47 8.04 -2.39 -0.02 0.45 16 49 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 50 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 51 H 0.07 2.41 6.45 -2.39 -0.02 2.40 16 Total: -1.00 -77.82 398.83 4.60 -73.22 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: 0.75 Total: 9.93 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: 6.07 Total: 6.36 kcal Atomic # 7 Polarization: -116.29 SS G_CDS: -4.99 Total: -121.28 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: 0.74 Total: -18.13 kcal Atomic # 14 Polarization: 47.88 SS G_CDS: 2.03 Total: 49.90 kcal Total: -77.82 4.60 -73.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961280288.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.680 kcal (2) G-P(sol) polarization free energy of solvation -77.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds