Wall clock time and date at job start Wed Apr 1 2020 05:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50702 * 109.47508 * 2 1 4 4 C 1.35316 * 126.66702 * 90.31473 * 3 2 1 5 5 C 1.42265 * 103.91952 * 180.08465 * 4 3 2 6 6 C 1.48329 * 126.93828 * 179.88739 * 5 4 3 7 7 O 1.21503 * 119.99747 * 353.07179 * 6 5 4 8 8 N 1.34778 * 120.00516 * 173.06772 * 6 5 4 9 9 C 1.46929 * 120.62783 * 353.24134 * 8 6 5 10 10 C 1.53186 * 108.77626 * 233.58340 * 9 8 6 11 11 C 1.53039 * 109.31413 * 305.36772 * 10 9 8 12 12 C 1.53036 * 109.54159 * 61.36197 * 11 10 9 13 13 H 1.08995 * 109.52233 * 58.60185 * 12 11 10 14 14 C 1.52995 * 109.50065 * 178.68541 * 12 11 10 15 15 H 1.09008 * 110.77849 * 56.60010 * 14 12 11 16 16 C 1.55157 * 110.72136 * 179.83593 * 14 12 11 17 17 C 1.54913 * 101.58175 * 153.86455 * 16 14 12 18 18 N 1.47421 * 104.83073 * 322.99446 * 17 16 14 19 19 C 1.36938 * 125.64663 * 204.08635 * 18 17 16 20 20 H 1.08006 * 119.99819 * 180.02562 * 19 18 17 21 21 C 1.38809 * 120.00168 * 359.75103 * 19 18 17 22 22 N 1.31622 * 119.99920 * 0.27789 * 21 19 18 23 23 Si 1.86799 * 120.00129 * 180.26951 * 21 19 18 24 24 H 1.48504 * 109.46823 * 90.00177 * 23 21 19 25 25 H 1.48494 * 109.47152 * 210.00004 * 23 21 19 26 26 H 1.48493 * 109.47263 * 330.00457 * 23 21 19 27 27 C 1.47019 * 108.70542 * 24.35462 * 18 17 16 28 28 C 1.46922 * 120.63430 * 173.21515 * 8 6 5 29 29 N 1.30983 * 106.12506 * 359.62729 * 5 4 3 30 30 O 1.20905 * 111.44107 * 0.23980 * 29 5 4 31 31 H 1.08994 * 109.47208 * 300.00676 * 1 2 3 32 32 H 1.09004 * 109.46715 * 60.00465 * 1 2 3 33 33 H 1.09002 * 109.47485 * 179.97438 * 1 2 3 34 34 H 1.08994 * 109.47208 * 239.99324 * 2 1 3 35 35 H 1.09004 * 109.46715 * 119.99535 * 2 1 3 36 36 H 1.07999 * 128.03638 * 359.94656 * 4 3 2 37 37 H 1.09005 * 109.58139 * 353.37094 * 9 8 6 38 38 H 1.09002 * 109.58881 * 113.65091 * 9 8 6 39 39 H 1.09007 * 109.49593 * 65.31624 * 10 9 8 40 40 H 1.09001 * 109.49787 * 185.37772 * 10 9 8 41 41 H 1.09007 * 109.45393 * 301.34059 * 11 10 9 42 42 H 1.08996 * 109.46205 * 181.38835 * 11 10 9 43 43 H 1.09000 * 111.00602 * 35.79624 * 16 14 12 44 44 H 1.08996 * 111.03944 * 271.95020 * 16 14 12 45 45 H 1.08994 * 110.36971 * 204.15153 * 17 16 14 46 46 H 1.09002 * 110.45910 * 81.87682 * 17 16 14 47 47 H 0.96995 * 119.99926 * 179.97438 * 22 21 19 48 48 H 1.09001 * 109.88282 * 118.13214 * 27 18 17 49 49 H 1.08996 * 109.88165 * 239.29329 * 27 18 17 50 50 H 1.08999 * 109.58615 * 6.62953 * 28 8 6 51 51 H 1.08999 * 109.58763 * 246.20575 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3075 2.1806 1.0854 5 6 2.7401 3.4193 0.5353 6 6 3.1679 4.6262 1.2840 7 8 3.0524 4.6637 2.4929 8 7 3.6848 5.6811 0.6234 9 6 3.9682 5.5973 -0.8159 10 6 5.4265 6.0001 -1.0555 11 6 5.6772 7.3809 -0.4449 12 6 5.4334 7.3248 1.0648 13 1 6.0939 6.5827 1.5131 14 6 5.7159 8.6973 1.6791 15 1 5.1066 9.4663 1.2041 16 6 5.4732 8.6734 3.2114 17 6 6.4116 9.8081 3.6926 18 7 7.6008 9.7067 2.8272 19 6 8.8562 10.1553 3.1402 20 1 9.6647 10.0337 2.4344 21 6 9.0885 10.7714 4.3622 22 7 8.1032 10.9195 5.2223 23 14 10.7993 11.3900 4.7861 24 1 10.9441 12.7961 4.3308 25 1 11.0000 11.3225 6.2559 26 1 11.8138 10.5435 4.1085 27 6 7.2143 9.0502 1.5698 28 6 3.9750 6.9369 1.3285 29 7 2.6898 3.2768 -0.7658 30 8 2.2997 2.1750 -1.0750 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 2.2171 1.9104 2.1271 37 1 3.8100 4.5753 -1.1605 38 1 3.3065 6.2724 -1.3586 39 1 6.0872 5.2701 -0.5877 40 1 5.6231 6.0345 -2.1271 41 1 4.9991 8.1057 -0.8957 42 1 6.7076 7.6806 -0.6356 43 1 5.7679 7.7151 3.6388 44 1 4.4333 8.9005 3.4464 45 1 6.6876 9.6553 4.7359 46 1 5.9320 10.7787 3.5660 47 1 8.2656 11.3497 6.0764 48 1 7.3774 9.7283 0.7321 49 1 7.7984 8.1403 1.4320 50 1 3.8214 6.7990 2.3988 51 1 3.3156 7.7232 0.9610 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961280289.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:56 Heat of formation + Delta-G solvation = 32.483585 kcal Electronic energy + Delta-G solvation = -30919.241516 eV Core-core repulsion = 26821.803330 eV Total energy + Delta-G solvation = -4097.438186 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -46.19876 -41.45112 -39.74938 -38.12377 -35.85751 -35.56248 -34.76291 -33.63756 -32.60535 -31.20218 -30.66091 -29.03342 -27.18803 -26.59802 -25.11946 -24.94940 -23.93269 -23.35568 -22.06287 -21.66957 -20.79903 -20.05967 -18.94484 -18.88289 -18.49048 -17.98271 -17.11755 -17.00682 -16.59639 -16.06098 -15.66144 -15.56641 -15.48100 -15.33131 -15.00528 -14.65083 -14.47316 -14.37698 -14.16763 -14.11679 -13.67830 -13.54326 -13.41301 -13.34628 -12.98475 -12.85746 -12.74458 -12.51622 -12.44981 -12.14737 -12.00633 -11.98102 -11.86714 -11.78146 -11.70680 -11.61252 -11.56235 -11.38591 -11.20469 -10.99278 -10.75072 -10.45563 -9.82259 -8.89158 -7.78459 -5.23083 -0.04884 0.62010 1.43801 1.46498 1.55168 1.57810 1.91951 1.98074 2.48272 2.72216 3.30173 3.33215 3.57615 3.63691 3.74114 3.81551 3.89803 3.93278 4.00118 4.14366 4.16081 4.20661 4.33180 4.36106 4.36995 4.44596 4.51402 4.59801 4.68129 4.69646 4.71205 4.81146 4.83859 4.88272 4.95147 4.96686 5.03170 5.08187 5.08474 5.14740 5.15618 5.28252 5.33021 5.41390 5.42634 5.43251 5.50594 5.64486 5.81091 6.10246 6.30010 6.72395 7.00080 7.09517 7.77951 8.42551 9.23632 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.024357 B = 0.002020 C = 0.001958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.275802 B =13855.597471 C =14299.663918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.041 4.041 3 C -0.005 4.005 4 C -0.199 4.199 5 C -0.040 4.040 6 C 0.587 3.413 7 O -0.562 6.562 8 N -0.593 5.593 9 C 0.086 3.914 10 C -0.126 4.126 11 C -0.113 4.113 12 C -0.074 4.074 13 H 0.052 0.948 14 C -0.075 4.075 15 H 0.088 0.912 16 C -0.126 4.126 17 C 0.153 3.847 18 N -0.629 5.629 19 C -0.240 4.240 20 H 0.080 0.920 21 C -0.072 4.072 22 N -0.950 5.950 23 Si 0.982 3.018 24 H -0.285 1.285 25 H -0.293 1.293 26 H -0.269 1.269 27 C 0.142 3.858 28 C 0.120 3.880 29 N -0.336 5.336 30 O 0.121 5.879 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.089 0.911 34 H 0.112 0.888 35 H 0.118 0.882 36 H 0.187 0.813 37 H 0.116 0.884 38 H 0.087 0.913 39 H 0.052 0.948 40 H 0.103 0.897 41 H 0.081 0.919 42 H 0.067 0.933 43 H 0.050 0.950 44 H 0.080 0.920 45 H 0.067 0.933 46 H -0.011 1.011 47 H 0.246 0.754 48 H 0.025 0.975 49 H 0.020 0.980 50 H 0.076 0.924 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.930 -23.464 -17.412 33.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.079 4.079 3 C -0.068 4.068 4 C -0.221 4.221 5 C -0.197 4.197 6 C 0.374 3.626 7 O -0.440 6.440 8 N -0.325 5.325 9 C -0.036 4.036 10 C -0.164 4.164 11 C -0.151 4.151 12 C -0.094 4.094 13 H 0.071 0.929 14 C -0.094 4.094 15 H 0.107 0.893 16 C -0.165 4.165 17 C 0.028 3.972 18 N -0.355 5.355 19 C -0.369 4.369 20 H 0.098 0.902 21 C -0.264 4.264 22 N -0.600 5.600 23 Si 0.810 3.190 24 H -0.212 1.212 25 H -0.220 1.220 26 H -0.194 1.194 27 C 0.017 3.983 28 C -0.001 4.001 29 N -0.039 5.039 30 O 0.048 5.952 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.108 0.892 34 H 0.130 0.870 35 H 0.136 0.864 36 H 0.204 0.796 37 H 0.133 0.867 38 H 0.105 0.895 39 H 0.071 0.929 40 H 0.121 0.879 41 H 0.100 0.900 42 H 0.086 0.914 43 H 0.069 0.931 44 H 0.099 0.901 45 H 0.085 0.915 46 H 0.007 0.993 47 H 0.056 0.944 48 H 0.043 0.957 49 H 0.038 0.962 50 H 0.095 0.905 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -16.570 -22.477 -17.632 33.026 hybrid contribution 1.006 0.696 1.595 2.010 sum -15.564 -21.782 -16.037 31.207 Atomic orbital electron populations 1.21825 0.92870 1.03965 1.02339 1.20446 0.96921 0.83560 1.06991 1.25132 0.99790 0.97950 0.83958 1.22637 1.05719 0.91104 1.02684 1.23370 1.07615 0.97953 0.90758 1.17367 0.77670 0.81666 0.85910 1.90785 1.57315 1.81534 1.14320 1.48099 1.60673 1.12437 1.11253 1.22569 0.97158 1.05510 0.78362 1.21885 0.95152 0.96679 1.02663 1.21603 1.02778 0.97681 0.92996 1.21322 0.95414 0.95403 0.97234 0.92900 1.22029 0.95427 0.96693 0.95245 0.89324 1.22886 0.99412 0.98482 0.95685 1.21692 0.85481 0.93070 0.96915 1.44855 1.06072 1.69198 1.15374 1.19478 0.86449 1.30662 1.00266 0.90168 1.25694 1.01760 1.01994 0.96931 1.70086 1.31453 1.49518 1.08963 0.85015 0.79094 0.78123 0.76725 1.21182 1.21954 1.19395 1.21441 0.94140 0.94579 0.88148 1.21728 0.96102 0.84348 0.97969 1.74015 1.14971 1.00115 1.14762 1.84759 1.59107 1.17158 1.34221 0.92795 0.92499 0.89195 0.87011 0.86388 0.79557 0.86685 0.89507 0.92911 0.87862 0.90005 0.91410 0.93111 0.90105 0.91461 0.99333 0.94385 0.95704 0.96169 0.90530 0.89142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.58 9.90 71.98 0.71 0.13 16 2 C -0.04 -0.16 6.50 29.85 0.19 0.03 16 3 C -0.01 -0.06 6.73 25.01 0.17 0.11 16 4 C -0.20 -3.57 10.93 22.60 0.25 -3.32 16 5 C -0.04 -0.94 6.88 42.96 0.30 -0.65 16 6 C 0.59 17.22 7.71 86.93 0.67 17.89 16 7 O -0.56 -20.28 16.38 -3.72 -0.06 -20.34 16 8 N -0.59 -15.34 2.97 -821.75 -2.44 -17.78 16 9 C 0.09 1.70 6.13 86.36 0.53 2.23 16 10 C -0.13 -2.38 6.08 30.67 0.19 -2.19 16 11 C -0.11 -2.51 5.03 30.62 0.15 -2.35 16 12 C -0.07 -2.09 1.74 -10.72 -0.02 -2.11 16 13 H 0.05 1.75 8.07 -2.39 -0.02 1.73 16 14 C -0.07 -2.55 2.48 -9.60 -0.02 -2.57 16 15 H 0.09 2.77 8.14 -2.38 -0.02 2.75 16 16 C -0.13 -5.05 5.49 31.99 0.18 -4.87 16 17 C 0.15 8.03 5.88 86.86 0.51 8.54 16 18 N -0.63 -34.09 3.39 -691.99 -2.35 -36.44 16 19 C -0.24 -14.02 10.27 84.03 0.86 -13.16 16 20 H 0.08 4.48 7.83 -2.91 -0.02 4.46 16 21 C -0.07 -4.23 5.49 84.86 0.47 -3.76 16 22 N -0.95 -59.01 10.09 21.65 0.22 -58.79 16 23 Si 0.98 47.23 29.55 68.60 2.03 49.26 16 24 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 25 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 26 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 27 C 0.14 6.03 5.99 86.73 0.52 6.55 16 28 C 0.12 3.25 5.39 86.36 0.47 3.72 16 29 N -0.34 -6.82 8.65 -49.52 -0.43 -7.25 16 30 O 0.12 1.93 11.18 71.90 0.80 2.73 16 31 H 0.05 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.06 0.29 8.14 -2.38 -0.02 0.27 16 33 H 0.09 0.04 8.14 -2.39 -0.02 0.02 16 34 H 0.11 0.06 8.14 -2.39 -0.02 0.04 16 35 H 0.12 0.12 8.14 -2.38 -0.02 0.10 16 36 H 0.19 2.96 8.06 -2.91 -0.02 2.93 16 37 H 0.12 2.29 4.20 -12.13 -0.05 2.24 16 38 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 40 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 42 H 0.07 1.60 7.46 -2.39 -0.02 1.58 16 43 H 0.05 2.12 8.05 -2.39 -0.02 2.10 16 44 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 45 H 0.07 4.03 5.88 -2.39 -0.01 4.01 16 46 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 47 H 0.25 14.82 8.31 -92.71 -0.77 14.04 16 48 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 49 H 0.02 0.87 7.76 -2.39 -0.02 0.85 16 50 H 0.08 2.44 6.36 -2.39 -0.02 2.43 16 51 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -76.12 398.11 4.76 -71.35 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: 0.88 Total: 13.05 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: 6.11 Total: 4.22 kcal Atomic # 7 Polarization: -115.27 SS G_CDS: -5.00 Total: -120.27 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: 0.74 Total: -17.61 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 2.03 Total: 49.26 kcal Total: -76.12 4.76 -71.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961280289.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.838 kcal (2) G-P(sol) polarization free energy of solvation -76.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds