Wall clock time and date at job start Wed Apr 1 2020 05:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50694 * 109.47036 * 2 1 4 4 C 1.35312 * 126.67166 * 89.71031 * 3 2 1 5 5 C 1.42270 * 103.92543 * 179.90842 * 4 3 2 6 6 C 1.48332 * 126.93949 * 180.13134 * 5 4 3 7 7 O 1.21498 * 120.00184 * 6.92487 * 6 5 4 8 8 N 1.34778 * 119.99794 * 186.93058 * 6 5 4 9 9 C 1.46925 * 120.63228 * 6.78619 * 8 6 5 10 10 C 1.53197 * 108.77341 * 126.36634 * 9 8 6 11 11 C 1.53046 * 109.31080 * 54.63851 * 10 9 8 12 12 C 1.53037 * 109.53731 * 298.62884 * 11 10 9 13 13 H 1.09003 * 109.50125 * 301.42063 * 12 11 10 14 14 C 1.53001 * 109.49965 * 181.31609 * 12 11 10 15 15 H 1.09000 * 110.88276 * 300.70687 * 14 12 11 16 16 C 1.55150 * 111.00482 * 176.82215 * 14 12 11 17 17 C 1.54373 * 102.91947 * 206.45888 * 16 14 12 18 18 N 1.47014 * 107.28886 * 22.13677 * 17 16 14 19 19 C 1.36935 * 125.64872 * 181.06082 * 18 17 16 20 20 H 1.08002 * 120.00306 * 180.02562 * 19 18 17 21 21 C 1.38820 * 119.99936 * 0.04027 * 19 18 17 22 22 N 1.31618 * 119.99793 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00015 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47118 * 89.99899 * 23 21 19 25 25 H 1.48493 * 109.47239 * 210.00005 * 23 21 19 26 26 H 1.48501 * 109.47203 * 330.00143 * 23 21 19 27 27 C 1.47420 * 108.70586 * 1.09370 * 18 17 16 28 28 C 1.46923 * 120.62591 * 186.50462 * 8 6 5 29 29 N 1.30984 * 106.12212 * 0.35822 * 5 4 3 30 30 O 1.20903 * 111.43935 * 359.76968 * 29 5 4 31 31 H 1.08995 * 109.47348 * 60.00043 * 1 2 3 32 32 H 1.09004 * 109.47230 * 299.99720 * 1 2 3 33 33 H 1.09003 * 109.47184 * 180.02562 * 1 2 3 34 34 H 1.09007 * 109.46750 * 119.99787 * 2 1 3 35 35 H 1.08992 * 109.47093 * 239.99604 * 2 1 3 36 36 H 1.08003 * 128.03503 * 0.02562 * 4 3 2 37 37 H 1.09000 * 109.58369 * 246.15495 * 9 8 6 38 38 H 1.09001 * 109.58238 * 6.58535 * 9 8 6 39 39 H 1.09005 * 109.49548 * 174.58201 * 10 9 8 40 40 H 1.08994 * 109.50223 * 294.65116 * 10 9 8 41 41 H 1.09003 * 109.45961 * 58.65314 * 11 10 9 42 42 H 1.09001 * 109.45842 * 178.60860 * 11 10 9 43 43 H 1.09008 * 110.72082 * 324.78790 * 16 14 12 44 44 H 1.08998 * 110.72666 * 88.06071 * 16 14 12 45 45 H 1.09002 * 109.84156 * 262.72646 * 17 16 14 46 46 H 1.09000 * 110.03355 * 141.65015 * 17 16 14 47 47 H 0.96999 * 119.99740 * 179.97438 * 22 21 19 48 48 H 1.09002 * 110.37248 * 217.03451 * 27 18 17 49 49 H 1.09009 * 110.36649 * 94.71046 * 27 18 17 50 50 H 1.08999 * 109.59105 * 353.42132 * 28 8 6 51 51 H 1.09001 * 109.58668 * 113.84909 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2965 2.1845 1.0853 5 6 2.7385 3.4199 0.5352 6 6 3.1652 4.6272 1.2839 7 8 3.2793 4.5836 2.4927 8 7 3.4262 5.7726 0.6232 9 6 3.1516 5.8860 -0.8157 10 6 2.2699 7.1159 -1.0539 11 6 2.9432 8.3473 -0.4435 12 6 3.0989 8.1499 1.0661 13 1 2.1190 7.9871 1.5148 14 6 3.7422 9.3948 1.6803 15 1 4.7205 9.5847 1.2387 16 6 3.8441 9.2646 3.2229 17 6 3.8343 10.7344 3.6948 18 7 3.2143 11.5320 2.6268 19 6 3.0349 12.8894 2.6461 20 1 2.5662 13.3842 1.8083 21 6 3.4556 13.6296 3.7426 22 7 4.0265 13.0266 4.7637 23 14 3.2115 15.4814 3.7687 24 1 1.8929 15.7984 4.3740 25 1 4.2894 16.1115 4.5725 26 1 3.2578 16.0065 2.3804 27 6 2.8171 10.6284 1.5318 28 6 3.9848 6.9334 1.3296 29 7 2.6879 3.2775 -0.7659 30 8 2.2986 2.1754 -1.0750 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 1.8933 -0.5138 0.8901 35 1 1.8933 -0.5139 -0.8899 36 1 2.1969 1.9176 2.1271 37 1 4.0899 5.9983 -1.3589 38 1 2.6322 4.9918 -1.1601 39 1 2.1381 7.2670 -2.1254 40 1 1.2976 6.9627 -0.5858 41 1 3.9256 8.4853 -0.8950 42 1 2.3296 9.2281 -0.6331 43 1 2.9846 8.7259 3.6221 44 1 4.7745 8.7735 3.5080 45 1 4.8555 11.0747 3.8665 46 1 3.2533 10.8281 4.6123 47 1 4.3208 13.5438 5.5297 48 1 2.9772 11.1087 0.5665 49 1 1.7730 10.3351 1.6419 50 1 4.0151 6.7301 2.4000 51 1 4.9924 7.1330 0.9648 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961280290.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:40:00 Heat of formation + Delta-G solvation = 50.035332 kcal Electronic energy + Delta-G solvation = -30883.124950 eV Core-core repulsion = 26786.447865 eV Total energy + Delta-G solvation = -4096.677085 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -45.44831 -40.36232 -38.32602 -36.72136 -35.40247 -34.45770 -33.41159 -32.32599 -31.16487 -30.56730 -28.89696 -27.46589 -26.11649 -24.84169 -24.64669 -23.84896 -22.78271 -22.57900 -20.81147 -19.82174 -19.48162 -19.17717 -18.16112 -17.66197 -17.16968 -16.73831 -16.04952 -15.59074 -15.11902 -14.87822 -14.79842 -14.48478 -14.37931 -14.02538 -13.88303 -13.81153 -13.51780 -13.18451 -13.16875 -13.06819 -12.42479 -12.27725 -12.22384 -12.09637 -11.75101 -11.73883 -11.54776 -11.18011 -11.00337 -10.88762 -10.82061 -10.77893 -10.67666 -10.56935 -10.34016 -10.06265 -9.93523 -9.83319 -9.74248 -9.63127 -9.54327 -8.75700 -8.54062 -6.75861 -5.65220 -2.98348 0.75757 1.31740 2.44840 2.67597 2.91703 3.43078 3.47625 3.49864 3.58636 3.97645 4.42389 4.51151 4.54072 4.59727 4.63620 4.74396 4.85731 4.87696 4.89577 5.00223 5.10331 5.20323 5.25630 5.38895 5.42276 5.49120 5.51797 5.53381 5.59899 5.63185 5.69033 5.73046 5.79076 5.80620 5.98068 5.99766 6.05718 6.10230 6.29081 6.33670 6.44637 6.49934 6.63697 6.66274 6.81279 7.04433 7.12590 7.61442 7.62874 7.72387 7.88391 7.90055 8.33050 9.28517 9.89238 10.56309 11.46415 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.028019 B = 0.001970 C = 0.001911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.079329 B =14213.039765 C =14647.946119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.043 4.043 3 C -0.028 4.028 4 C -0.182 4.182 5 C -0.015 4.015 6 C 0.594 3.406 7 O -0.521 6.521 8 N -0.593 5.593 9 C 0.086 3.914 10 C -0.133 4.133 11 C -0.117 4.117 12 C -0.086 4.086 13 H 0.074 0.926 14 C -0.094 4.094 15 H 0.074 0.926 16 C -0.141 4.141 17 C 0.177 3.823 18 N -0.607 5.607 19 C -0.226 4.226 20 H 0.077 0.923 21 C -0.011 4.011 22 N -0.922 5.922 23 Si 0.911 3.089 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.145 3.855 28 C 0.117 3.883 29 N -0.330 5.330 30 O 0.113 5.887 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.100 0.900 35 H 0.091 0.909 36 H 0.181 0.819 37 H 0.070 0.930 38 H 0.113 0.887 39 H 0.075 0.925 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.073 0.927 43 H 0.056 0.944 44 H 0.058 0.942 45 H 0.044 0.956 46 H 0.041 0.959 47 H 0.251 0.749 48 H 0.036 0.964 49 H 0.016 0.984 50 H 0.098 0.902 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.310 -28.164 -13.596 31.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.081 4.081 3 C -0.091 4.091 4 C -0.204 4.204 5 C -0.173 4.173 6 C 0.379 3.621 7 O -0.396 6.396 8 N -0.326 5.326 9 C -0.036 4.036 10 C -0.171 4.171 11 C -0.154 4.154 12 C -0.106 4.106 13 H 0.092 0.908 14 C -0.114 4.114 15 H 0.093 0.907 16 C -0.179 4.179 17 C 0.053 3.947 18 N -0.333 5.333 19 C -0.355 4.355 20 H 0.094 0.906 21 C -0.207 4.207 22 N -0.570 5.570 23 Si 0.742 3.258 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.207 1.207 27 C 0.019 3.981 28 C -0.004 4.004 29 N -0.034 5.034 30 O 0.041 5.959 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.118 0.882 35 H 0.110 0.890 36 H 0.198 0.802 37 H 0.088 0.912 38 H 0.130 0.870 39 H 0.094 0.906 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.091 0.909 43 H 0.075 0.925 44 H 0.077 0.923 45 H 0.062 0.938 46 H 0.059 0.941 47 H 0.062 0.938 48 H 0.054 0.946 49 H 0.034 0.966 50 H 0.116 0.884 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.881 -27.138 -13.782 30.684 hybrid contribution -0.188 0.824 0.787 1.155 sum -4.069 -26.314 -12.995 29.629 Atomic orbital electron populations 1.21819 0.93231 1.02961 1.03067 1.20175 0.96821 0.86018 1.05076 1.24524 1.02029 0.97133 0.85410 1.22442 1.04801 0.91561 1.01605 1.23546 1.05806 0.97923 0.90059 1.16985 0.77788 0.81219 0.86125 1.90815 1.52518 1.83661 1.12611 1.48002 1.62096 1.12158 1.10307 1.22404 1.00486 1.00911 0.79835 1.21925 0.99112 0.94805 1.01273 1.21620 1.01165 0.97595 0.95037 1.21391 0.99546 0.93955 0.95708 0.90780 1.22308 0.99347 0.93609 0.96170 0.90723 1.22943 1.00285 1.00188 0.94499 1.21134 0.98096 0.84497 0.90998 1.44490 1.70109 1.02749 1.15964 1.19057 1.33319 0.81069 1.02048 0.90551 1.24812 1.01068 0.98101 0.96677 1.69979 1.45693 1.33682 1.07597 0.86127 0.77260 0.85138 0.77287 1.21679 1.21711 1.20750 1.21514 0.94868 0.89556 0.92163 1.21764 0.96414 0.83480 0.98782 1.74061 1.15036 0.98867 1.15450 1.84788 1.59966 1.17378 1.33727 0.91931 0.91894 0.91050 0.88179 0.89039 0.80208 0.91169 0.86991 0.90616 0.91707 0.91702 0.90874 0.92530 0.92332 0.93768 0.94122 0.93832 0.94588 0.96646 0.88405 0.91049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.48 9.89 37.16 0.37 -0.11 16 2 C -0.04 -0.14 6.50 -27.89 -0.18 -0.32 16 3 C -0.03 -0.20 6.73 -35.35 -0.24 -0.43 16 4 C -0.18 -1.66 10.93 -39.08 -0.43 -2.09 16 5 C -0.01 -0.18 6.88 -82.53 -0.57 -0.74 16 6 C 0.59 8.48 7.71 -12.11 -0.09 8.38 16 7 O -0.52 -8.91 16.38 5.37 0.09 -8.82 16 8 N -0.59 -7.78 2.98 -173.95 -0.52 -8.30 16 9 C 0.09 0.94 6.13 -3.71 -0.02 0.91 16 10 C -0.13 -1.39 6.08 -26.61 -0.16 -1.55 16 11 C -0.12 -1.41 5.02 -26.69 -0.13 -1.55 16 12 C -0.09 -1.23 1.82 -90.72 -0.17 -1.40 16 13 H 0.07 1.16 8.13 -51.93 -0.42 0.73 16 14 C -0.09 -1.64 2.56 -88.47 -0.23 -1.87 16 15 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 16 C -0.14 -2.74 5.55 -24.87 -0.14 -2.88 16 17 C 0.18 4.48 5.38 -3.04 -0.02 4.46 16 18 N -0.61 -15.99 3.39 -170.04 -0.58 -16.57 16 19 C -0.23 -6.49 10.28 -15.06 -0.15 -6.65 16 20 H 0.08 2.11 7.83 -52.49 -0.41 1.69 16 21 C -0.01 -0.31 5.49 -17.43 -0.10 -0.40 16 22 N -0.92 -27.87 10.31 55.49 0.57 -27.29 16 23 Si 0.91 22.62 29.55 -169.99 -5.02 17.59 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 26 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 27 C 0.15 3.05 5.80 -2.53 -0.01 3.03 16 28 C 0.12 1.61 5.42 -3.93 -0.02 1.59 16 29 N -0.33 -3.53 8.65 33.29 0.29 -3.24 16 30 O 0.11 0.99 11.18 17.23 0.19 1.19 16 31 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 32 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 33 H 0.07 0.12 8.14 -51.93 -0.42 -0.30 16 34 H 0.10 0.19 8.14 -51.92 -0.42 -0.23 16 35 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 36 H 0.18 1.40 8.06 -52.48 -0.42 0.98 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.11 1.21 4.20 -56.83 -0.24 0.97 16 39 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.07 0.92 7.32 -51.93 -0.38 0.54 16 43 H 0.06 1.08 8.04 -51.92 -0.42 0.66 16 44 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.04 1.23 7.38 -51.93 -0.38 0.84 16 46 H 0.04 1.14 7.50 -51.93 -0.39 0.75 16 47 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 48 H 0.04 0.73 8.03 -51.93 -0.42 0.32 16 49 H 0.02 0.33 8.03 -51.92 -0.42 -0.08 16 50 H 0.10 1.51 6.46 -51.93 -0.34 1.18 16 51 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 LS Contribution 398.91 15.07 6.01 6.01 Total: -1.00 -33.75 398.91 -9.70 -43.45 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -8.44 Total: -2.41 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: -2.29 Total: -1.60 kcal Atomic # 7 Polarization: -55.17 SS G_CDS: -0.24 Total: -55.40 kcal Atomic # 8 Polarization: -7.92 SS G_CDS: 0.28 Total: -7.64 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.75 -9.70 -43.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961280290.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.484 kcal (2) G-P(sol) polarization free energy of solvation -33.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds