Wall clock time and date at job start Wed Apr 1 2020 05:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50694 * 109.47036 * 2 1 4 4 C 1.35312 * 126.67166 * 89.71031 * 3 2 1 5 5 C 1.42270 * 103.92543 * 179.90842 * 4 3 2 6 6 C 1.48332 * 126.93949 * 180.13134 * 5 4 3 7 7 O 1.21498 * 120.00184 * 6.92487 * 6 5 4 8 8 N 1.34778 * 119.99794 * 186.93058 * 6 5 4 9 9 C 1.46925 * 120.63228 * 6.78619 * 8 6 5 10 10 C 1.53197 * 108.77341 * 126.36634 * 9 8 6 11 11 C 1.53046 * 109.31080 * 54.63851 * 10 9 8 12 12 C 1.53037 * 109.53731 * 298.62884 * 11 10 9 13 13 H 1.09003 * 109.50125 * 301.42063 * 12 11 10 14 14 C 1.53001 * 109.49965 * 181.31609 * 12 11 10 15 15 H 1.09000 * 110.88276 * 300.70687 * 14 12 11 16 16 C 1.55150 * 111.00482 * 176.82215 * 14 12 11 17 17 C 1.54373 * 102.91947 * 206.45888 * 16 14 12 18 18 N 1.47014 * 107.28886 * 22.13677 * 17 16 14 19 19 C 1.36935 * 125.64872 * 181.06082 * 18 17 16 20 20 H 1.08002 * 120.00306 * 180.02562 * 19 18 17 21 21 C 1.38820 * 119.99936 * 0.04027 * 19 18 17 22 22 N 1.31618 * 119.99793 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00015 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47118 * 89.99899 * 23 21 19 25 25 H 1.48493 * 109.47239 * 210.00005 * 23 21 19 26 26 H 1.48501 * 109.47203 * 330.00143 * 23 21 19 27 27 C 1.47420 * 108.70586 * 1.09370 * 18 17 16 28 28 C 1.46923 * 120.62591 * 186.50462 * 8 6 5 29 29 N 1.30984 * 106.12212 * 0.35822 * 5 4 3 30 30 O 1.20903 * 111.43935 * 359.76968 * 29 5 4 31 31 H 1.08995 * 109.47348 * 60.00043 * 1 2 3 32 32 H 1.09004 * 109.47230 * 299.99720 * 1 2 3 33 33 H 1.09003 * 109.47184 * 180.02562 * 1 2 3 34 34 H 1.09007 * 109.46750 * 119.99787 * 2 1 3 35 35 H 1.08992 * 109.47093 * 239.99604 * 2 1 3 36 36 H 1.08003 * 128.03503 * 0.02562 * 4 3 2 37 37 H 1.09000 * 109.58369 * 246.15495 * 9 8 6 38 38 H 1.09001 * 109.58238 * 6.58535 * 9 8 6 39 39 H 1.09005 * 109.49548 * 174.58201 * 10 9 8 40 40 H 1.08994 * 109.50223 * 294.65116 * 10 9 8 41 41 H 1.09003 * 109.45961 * 58.65314 * 11 10 9 42 42 H 1.09001 * 109.45842 * 178.60860 * 11 10 9 43 43 H 1.09008 * 110.72082 * 324.78790 * 16 14 12 44 44 H 1.08998 * 110.72666 * 88.06071 * 16 14 12 45 45 H 1.09002 * 109.84156 * 262.72646 * 17 16 14 46 46 H 1.09000 * 110.03355 * 141.65015 * 17 16 14 47 47 H 0.96999 * 119.99740 * 179.97438 * 22 21 19 48 48 H 1.09002 * 110.37248 * 217.03451 * 27 18 17 49 49 H 1.09009 * 110.36649 * 94.71046 * 27 18 17 50 50 H 1.08999 * 109.59105 * 353.42132 * 28 8 6 51 51 H 1.09001 * 109.58668 * 113.84909 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2965 2.1845 1.0853 5 6 2.7385 3.4199 0.5352 6 6 3.1652 4.6272 1.2839 7 8 3.2793 4.5836 2.4927 8 7 3.4262 5.7726 0.6232 9 6 3.1516 5.8860 -0.8157 10 6 2.2699 7.1159 -1.0539 11 6 2.9432 8.3473 -0.4435 12 6 3.0989 8.1499 1.0661 13 1 2.1190 7.9871 1.5148 14 6 3.7422 9.3948 1.6803 15 1 4.7205 9.5847 1.2387 16 6 3.8441 9.2646 3.2229 17 6 3.8343 10.7344 3.6948 18 7 3.2143 11.5320 2.6268 19 6 3.0349 12.8894 2.6461 20 1 2.5662 13.3842 1.8083 21 6 3.4556 13.6296 3.7426 22 7 4.0265 13.0266 4.7637 23 14 3.2115 15.4814 3.7687 24 1 1.8929 15.7984 4.3740 25 1 4.2894 16.1115 4.5725 26 1 3.2578 16.0065 2.3804 27 6 2.8171 10.6284 1.5318 28 6 3.9848 6.9334 1.3296 29 7 2.6879 3.2775 -0.7659 30 8 2.2986 2.1754 -1.0750 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 1.8933 -0.5138 0.8901 35 1 1.8933 -0.5139 -0.8899 36 1 2.1969 1.9176 2.1271 37 1 4.0899 5.9983 -1.3589 38 1 2.6322 4.9918 -1.1601 39 1 2.1381 7.2670 -2.1254 40 1 1.2976 6.9627 -0.5858 41 1 3.9256 8.4853 -0.8950 42 1 2.3296 9.2281 -0.6331 43 1 2.9846 8.7259 3.6221 44 1 4.7745 8.7735 3.5080 45 1 4.8555 11.0747 3.8665 46 1 3.2533 10.8281 4.6123 47 1 4.3208 13.5438 5.5297 48 1 2.9772 11.1087 0.5665 49 1 1.7730 10.3351 1.6419 50 1 4.0151 6.7301 2.4000 51 1 4.9924 7.1330 0.9648 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961280290.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:59 Heat of formation + Delta-G solvation = 30.913192 kcal Electronic energy + Delta-G solvation = -30883.954149 eV Core-core repulsion = 26786.447865 eV Total energy + Delta-G solvation = -4097.506283 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -46.19275 -41.44780 -39.74181 -38.13194 -35.85474 -35.55244 -34.75077 -33.63467 -32.61217 -31.19652 -30.68037 -29.02866 -27.18461 -26.58803 -25.12068 -24.95491 -23.92821 -23.35163 -22.06560 -21.60918 -20.88751 -20.07204 -18.92627 -18.84271 -18.45058 -17.99686 -17.10680 -16.94771 -16.58972 -16.04530 -15.65447 -15.57664 -15.54298 -15.36191 -14.99181 -14.65847 -14.36780 -14.35414 -14.14728 -14.00854 -13.84950 -13.60664 -13.50112 -13.36484 -12.98206 -12.80846 -12.76065 -12.47186 -12.34385 -12.16973 -12.01503 -11.97332 -11.85267 -11.78874 -11.71408 -11.61336 -11.55387 -11.42562 -11.18812 -11.01850 -10.72249 -10.44784 -9.81729 -8.90733 -7.85557 -5.21571 -0.04281 0.62566 1.43718 1.46477 1.55161 1.58130 1.92438 1.98714 2.48696 2.72884 3.31987 3.33442 3.52994 3.65956 3.77251 3.81593 3.89355 3.94390 4.00850 4.14555 4.15788 4.20939 4.33094 4.36348 4.37900 4.44911 4.49325 4.59931 4.67613 4.70520 4.72285 4.81952 4.86406 4.89577 4.93719 4.97105 5.02527 5.07442 5.08671 5.12697 5.15905 5.28478 5.34423 5.41737 5.42810 5.44363 5.50851 5.65405 5.75932 6.10804 6.19012 6.72783 7.00699 7.09038 7.77299 8.42811 9.25108 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.028019 B = 0.001970 C = 0.001911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.079329 B =14213.039765 C =14647.946119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.041 4.041 3 C -0.005 4.005 4 C -0.198 4.198 5 C -0.040 4.040 6 C 0.588 3.412 7 O -0.561 6.561 8 N -0.593 5.593 9 C 0.085 3.915 10 C -0.125 4.125 11 C -0.114 4.114 12 C -0.074 4.074 13 H 0.059 0.941 14 C -0.075 4.075 15 H 0.082 0.918 16 C -0.127 4.127 17 C 0.185 3.815 18 N -0.630 5.630 19 C -0.242 4.242 20 H 0.084 0.916 21 C -0.072 4.072 22 N -0.954 5.954 23 Si 0.981 3.019 24 H -0.287 1.287 25 H -0.294 1.294 26 H -0.266 1.266 27 C 0.142 3.858 28 C 0.120 3.880 29 N -0.336 5.336 30 O 0.121 5.879 31 H 0.056 0.944 32 H 0.052 0.948 33 H 0.089 0.911 34 H 0.119 0.881 35 H 0.112 0.888 36 H 0.188 0.812 37 H 0.085 0.915 38 H 0.116 0.884 39 H 0.102 0.898 40 H 0.055 0.945 41 H 0.077 0.923 42 H 0.070 0.930 43 H 0.058 0.942 44 H 0.077 0.923 45 H 0.011 0.989 46 H 0.000 1.000 47 H 0.246 0.754 48 H 0.047 0.953 49 H 0.017 0.983 50 H 0.078 0.922 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.780 -29.996 -16.426 34.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.079 4.079 3 C -0.069 4.069 4 C -0.221 4.221 5 C -0.197 4.197 6 C 0.375 3.625 7 O -0.439 6.439 8 N -0.324 5.324 9 C -0.036 4.036 10 C -0.163 4.163 11 C -0.151 4.151 12 C -0.093 4.093 13 H 0.077 0.923 14 C -0.095 4.095 15 H 0.101 0.899 16 C -0.166 4.166 17 C 0.060 3.940 18 N -0.356 5.356 19 C -0.371 4.371 20 H 0.102 0.898 21 C -0.264 4.264 22 N -0.603 5.603 23 Si 0.809 3.191 24 H -0.214 1.214 25 H -0.221 1.221 26 H -0.190 1.190 27 C 0.017 3.983 28 C -0.002 4.002 29 N -0.039 5.039 30 O 0.047 5.953 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.108 0.892 34 H 0.137 0.863 35 H 0.130 0.870 36 H 0.205 0.795 37 H 0.103 0.897 38 H 0.134 0.866 39 H 0.120 0.880 40 H 0.074 0.926 41 H 0.096 0.904 42 H 0.088 0.912 43 H 0.077 0.923 44 H 0.095 0.905 45 H 0.029 0.971 46 H 0.018 0.982 47 H 0.055 0.945 48 H 0.065 0.935 49 H 0.034 0.966 50 H 0.096 0.904 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.365 -28.972 -16.674 33.711 hybrid contribution -0.100 1.304 1.626 2.087 sum -4.465 -27.668 -15.047 31.810 Atomic orbital electron populations 1.21830 0.92949 1.03956 1.02324 1.20441 0.96834 0.83593 1.07013 1.25133 0.99792 0.97961 0.83973 1.22636 1.05656 0.91112 1.02682 1.23379 1.07658 0.97930 0.90745 1.17350 0.77197 0.82089 0.85902 1.90781 1.54386 1.84453 1.14287 1.48093 1.61521 1.11588 1.11209 1.22573 1.01359 1.01319 0.78395 1.21888 0.98218 0.93577 1.02666 1.21602 1.02105 0.98341 0.93061 1.21217 0.98408 0.92456 0.97256 0.92253 1.22167 0.99150 0.93599 0.94572 0.89946 1.22787 1.01422 0.96158 0.96186 1.20883 0.95247 0.87915 0.89935 1.44832 1.70182 1.02930 1.17641 1.19502 1.32804 0.82552 1.02229 0.89782 1.25733 1.01340 1.02891 0.96484 1.70219 1.46879 1.35132 1.08069 0.85033 0.76775 0.79436 0.77821 1.21403 1.22065 1.19034 1.21693 0.95483 0.90111 0.91001 1.21633 0.97041 0.83549 0.97988 1.74019 1.15319 0.99760 1.14803 1.84761 1.59265 1.17014 1.34244 0.92519 0.92836 0.89210 0.86323 0.87007 0.79515 0.89712 0.86645 0.87963 0.92620 0.90387 0.91176 0.92290 0.90463 0.97101 0.98199 0.94492 0.93461 0.96557 0.90401 0.89552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.57 9.89 71.98 0.71 0.14 16 2 C -0.04 -0.14 6.50 29.85 0.19 0.05 16 3 C -0.01 -0.06 6.73 25.01 0.17 0.10 16 4 C -0.20 -3.44 10.93 22.60 0.25 -3.20 16 5 C -0.04 -0.92 6.88 42.96 0.30 -0.63 16 6 C 0.59 16.83 7.71 86.93 0.67 17.50 16 7 O -0.56 -19.75 16.38 -3.71 -0.06 -19.81 16 8 N -0.59 -15.01 2.98 -822.57 -2.45 -17.46 16 9 C 0.09 1.66 6.13 86.36 0.53 2.19 16 10 C -0.13 -2.30 6.08 30.68 0.19 -2.11 16 11 C -0.11 -2.47 5.02 30.62 0.15 -2.32 16 12 C -0.07 -2.01 1.82 -10.86 -0.02 -2.03 16 13 H 0.06 1.82 8.13 -2.39 -0.02 1.80 16 14 C -0.08 -2.56 2.56 -9.40 -0.02 -2.58 16 15 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 16 C -0.13 -5.03 5.55 31.80 0.18 -4.85 16 17 C 0.19 9.77 5.38 86.75 0.47 10.24 16 18 N -0.63 -33.87 3.39 -691.89 -2.35 -36.22 16 19 C -0.24 -14.06 10.28 84.04 0.86 -13.19 16 20 H 0.08 4.62 7.83 -2.91 -0.02 4.60 16 21 C -0.07 -4.25 5.49 84.86 0.47 -3.79 16 22 N -0.95 -59.90 10.31 21.65 0.22 -59.68 16 23 Si 0.98 47.18 29.55 68.60 2.03 49.21 16 24 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 25 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 26 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 27 C 0.14 5.90 5.80 86.86 0.50 6.41 16 28 C 0.12 3.19 5.42 86.22 0.47 3.65 16 29 N -0.34 -6.70 8.65 -49.52 -0.43 -7.13 16 30 O 0.12 1.88 11.18 71.84 0.80 2.68 16 31 H 0.06 0.29 8.14 -2.39 -0.02 0.27 16 32 H 0.05 0.31 8.14 -2.38 -0.02 0.29 16 33 H 0.09 0.04 8.14 -2.39 -0.02 0.02 16 34 H 0.12 0.06 8.14 -2.38 -0.02 0.04 16 35 H 0.11 0.02 8.14 -2.39 -0.02 0.00 16 36 H 0.19 2.84 8.06 -2.91 -0.02 2.82 16 37 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.12 2.26 4.20 -12.06 -0.05 2.21 16 39 H 0.10 1.39 8.14 -2.38 -0.02 1.37 16 40 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.07 1.60 7.32 -2.39 -0.02 1.58 16 43 H 0.06 2.30 8.04 -2.38 -0.02 2.28 16 44 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 45 H 0.01 0.63 7.38 -2.39 -0.02 0.61 16 46 H 0.00 -0.01 7.50 -2.39 -0.02 -0.03 16 47 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 48 H 0.05 1.86 8.03 -2.39 -0.02 1.84 16 49 H 0.02 0.69 8.03 -2.38 -0.02 0.67 16 50 H 0.08 2.42 6.46 -2.39 -0.02 2.40 16 51 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -76.59 398.91 4.70 -71.89 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: 0.87 Total: 10.92 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: 6.06 Total: 5.59 kcal Atomic # 7 Polarization: -115.49 SS G_CDS: -5.00 Total: -120.49 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: 0.74 Total: -17.13 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 2.03 Total: 49.21 kcal Total: -76.59 4.70 -71.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961280290.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.805 kcal (2) G-P(sol) polarization free energy of solvation -76.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds