Wall clock time and date at job start Wed Apr 1 2020 06:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50693 * 109.47448 * 2 1 4 4 O 1.34257 * 126.52679 * 269.96218 * 3 2 1 5 5 C 1.34050 * 108.22969 * 180.02562 * 4 3 2 6 6 N 1.29939 * 109.24174 * 359.74542 * 5 4 3 7 7 C 1.36068 * 108.47462 * 0.40707 * 6 5 4 8 8 C 1.47422 * 126.44890 * 179.86308 * 7 6 5 9 9 O 1.21609 * 120.00319 * 173.35380 * 8 7 6 10 10 N 1.34776 * 119.99827 * 353.35904 * 8 7 6 11 11 C 1.46930 * 120.63061 * 354.09840 * 10 8 7 12 12 C 1.53194 * 108.77733 * 126.37189 * 11 10 8 13 13 C 1.53041 * 109.33653 * 54.61688 * 12 11 10 14 14 C 1.53035 * 109.54275 * 298.68340 * 13 12 11 15 15 H 1.09005 * 109.50145 * 301.35454 * 14 13 12 16 16 C 1.52998 * 109.50023 * 181.28521 * 14 13 12 17 17 H 1.09006 * 109.87774 * 181.22300 * 16 14 13 18 18 C 1.54321 * 109.88320 * 302.24208 * 16 14 13 19 19 C 1.55156 * 102.94221 * 141.61145 * 18 16 14 20 20 C 1.54916 * 101.58013 * 324.49397 * 19 18 16 21 21 N 1.47027 * 109.88109 * 60.21354 * 16 14 13 22 22 C 1.36932 * 125.65189 * 61.60377 * 21 16 14 23 23 H 1.08002 * 119.99859 * 5.85524 * 22 21 16 24 24 C 1.38817 * 119.99963 * 185.85252 * 22 21 16 25 25 N 1.31616 * 119.99882 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 119.99696 * 180.02562 * 24 22 21 27 27 H 1.48505 * 109.47291 * 90.00156 * 26 24 22 28 28 H 1.48500 * 109.47008 * 209.99754 * 26 24 22 29 29 H 1.48496 * 109.47758 * 330.00127 * 26 24 22 30 30 C 1.46924 * 120.63204 * 174.07652 * 10 8 7 31 31 H 1.09007 * 109.46721 * 299.99941 * 1 2 3 32 32 H 1.09004 * 109.47121 * 59.99438 * 1 2 3 33 33 H 1.08995 * 109.47091 * 180.02562 * 1 2 3 34 34 H 1.09007 * 109.46721 * 240.00059 * 2 1 3 35 35 H 1.09004 * 109.47121 * 120.00562 * 2 1 3 36 36 H 1.07997 * 125.37979 * 180.02562 * 5 4 3 37 37 H 1.09001 * 109.58592 * 6.58145 * 11 10 8 38 38 H 1.09003 * 109.70158 * 246.22543 * 11 10 8 39 39 H 1.08999 * 109.49762 * 174.58367 * 12 11 10 40 40 H 1.08996 * 109.49340 * 294.65254 * 12 11 10 41 41 H 1.09000 * 109.46322 * 58.67663 * 13 12 11 42 42 H 1.09005 * 109.45716 * 178.63319 * 13 12 11 43 43 H 1.08997 * 110.71843 * 259.96868 * 18 16 14 44 44 H 1.08994 * 110.71722 * 23.24731 * 18 16 14 45 45 H 1.08991 * 111.00726 * 82.57067 * 19 18 16 46 46 H 1.09005 * 111.00560 * 206.39201 * 19 18 16 47 47 H 1.09003 * 110.36587 * 155.84940 * 20 19 18 48 48 H 1.08993 * 110.37030 * 278.06291 * 20 19 18 49 49 H 0.97002 * 119.99679 * 179.97438 * 25 24 22 50 50 H 1.09006 * 109.58639 * 353.41882 * 30 10 8 51 51 H 1.09001 * 109.58878 * 113.84040 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 8 2.2995 2.1739 -1.0789 5 6 2.7240 3.3737 -0.6580 6 7 2.7256 3.3959 0.6412 7 6 2.3023 2.1844 1.0936 8 6 2.1573 1.7778 2.5032 9 8 1.6538 0.7055 2.7780 10 7 2.5825 2.5946 3.4873 11 6 3.3079 3.8327 3.1715 12 6 2.6034 5.0061 3.8597 13 6 2.4791 4.7150 5.3570 14 6 1.6357 3.4551 5.5652 15 1 0.6508 3.5990 5.1208 16 6 1.4852 3.1830 7.0633 17 1 0.9034 2.2744 7.2183 18 6 2.8774 3.0318 7.7116 19 6 2.7015 3.7389 9.0815 20 6 1.7418 4.8977 8.7122 21 7 0.8184 4.3206 7.7135 22 6 -0.4454 4.7694 7.4371 23 1 -1.0758 4.2203 6.7533 24 6 -0.9163 5.9299 8.0358 25 7 -0.1479 6.5991 8.8688 26 14 -2.6407 6.5415 7.6592 27 1 -3.5985 5.9495 8.6274 28 1 -2.6760 8.0219 7.7704 29 1 -3.0185 6.1396 6.2805 30 6 2.3292 2.2641 4.8963 31 1 -0.3633 0.5139 0.8901 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 1.8933 -0.5139 -0.8901 35 1 1.8933 -0.5139 0.8900 36 1 3.0143 4.1940 -1.2977 37 1 3.3104 3.9897 2.0929 38 1 4.3338 3.7598 3.5326 39 1 3.1851 5.9162 3.7131 40 1 1.6099 5.1362 3.4306 41 1 3.4715 4.5611 5.7807 42 1 1.9998 5.5593 5.8525 43 1 3.1262 1.9797 7.8500 44 1 3.6379 3.5336 7.1135 45 1 2.2442 3.0702 9.8105 46 1 3.6537 4.1217 9.4488 47 1 1.1890 5.2273 9.5920 48 1 2.2993 5.7294 8.2817 49 1 -0.4769 7.4103 9.2868 50 1 1.6859 1.3861 4.9558 51 1 3.2745 2.0617 5.3999 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963273782.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:01:33 Heat of formation + Delta-G solvation = 19.980858 kcal Electronic energy + Delta-G solvation = -32270.412064 eV Core-core repulsion = 28172.431719 eV Total energy + Delta-G solvation = -4097.980345 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.73388 -39.98668 -38.27013 -36.38855 -35.17620 -34.34471 -32.78583 -32.12360 -31.09065 -29.56096 -29.24056 -26.72599 -25.73827 -24.50746 -24.23008 -23.43970 -22.60762 -21.74082 -21.05524 -20.15530 -19.46568 -18.27310 -17.58775 -17.04119 -16.71886 -16.45772 -15.81155 -15.19647 -15.11623 -14.82709 -14.68057 -14.43484 -14.07771 -13.96487 -13.77226 -13.59989 -13.18320 -13.01863 -12.80758 -12.68505 -12.15979 -12.03030 -11.89861 -11.81834 -11.61971 -11.47953 -11.35417 -11.08300 -11.03585 -10.81249 -10.79095 -10.47038 -10.19204 -10.12618 -10.06904 -9.84638 -9.75058 -9.54508 -9.37627 -9.34218 -9.19857 -8.56085 -8.32017 -6.75894 -5.64178 -3.00328 0.90342 1.81097 2.29085 3.07117 3.27057 3.42446 3.48250 3.49445 3.78597 4.32579 4.52025 4.53396 4.78814 4.95094 5.02648 5.20053 5.28696 5.30888 5.35605 5.43096 5.51563 5.52928 5.56994 5.60666 5.62716 5.78446 5.82987 5.83998 5.86241 5.93132 5.98237 5.99865 6.04213 6.20525 6.33354 6.36845 6.43179 6.47865 6.57385 6.63047 6.71560 6.80688 6.90100 7.04922 7.10306 7.19126 7.21395 7.58816 7.62690 7.68043 7.89973 8.20747 8.37527 9.27188 9.88713 10.55778 11.43880 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013137 B = 0.003086 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2130.935012 B = 9072.156511 C = 9672.709863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.043 4.043 3 C 0.042 3.958 4 O -0.199 6.199 5 C 0.173 3.827 6 N -0.457 5.457 7 C -0.065 4.065 8 C 0.596 3.404 9 O -0.541 6.541 10 N -0.585 5.585 11 C 0.065 3.935 12 C -0.127 4.127 13 C -0.106 4.106 14 C -0.104 4.104 15 H 0.069 0.931 16 C 0.168 3.832 17 H 0.033 0.967 18 C -0.131 4.131 19 C -0.148 4.148 20 C 0.164 3.836 21 N -0.591 5.591 22 C -0.216 4.216 23 H 0.074 0.926 24 C -0.009 4.009 25 N -0.921 5.921 26 Si 0.907 3.093 27 H -0.290 1.290 28 H -0.291 1.291 29 H -0.283 1.283 30 C 0.116 3.884 31 H 0.067 0.933 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.115 0.885 36 H 0.255 0.745 37 H 0.144 0.856 38 H 0.055 0.945 39 H 0.065 0.935 40 H 0.060 0.940 41 H 0.054 0.946 42 H 0.083 0.917 43 H 0.055 0.945 44 H 0.067 0.933 45 H 0.056 0.944 46 H 0.054 0.946 47 H 0.088 0.912 48 H 0.016 0.984 49 H 0.251 0.749 50 H 0.086 0.914 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.448 -8.834 -18.401 22.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.081 4.081 3 C -0.014 4.014 4 O -0.085 6.085 5 C -0.054 4.054 6 N -0.186 5.186 7 C -0.184 4.184 8 C 0.383 3.617 9 O -0.420 6.420 10 N -0.315 5.315 11 C -0.058 4.058 12 C -0.165 4.165 13 C -0.144 4.144 14 C -0.126 4.126 15 H 0.088 0.912 16 C 0.060 3.940 17 H 0.051 0.949 18 C -0.169 4.169 19 C -0.187 4.187 20 C 0.040 3.960 21 N -0.315 5.315 22 C -0.345 4.345 23 H 0.092 0.908 24 C -0.204 4.204 25 N -0.569 5.569 26 Si 0.738 3.262 27 H -0.217 1.217 28 H -0.218 1.218 29 H -0.209 1.209 30 C -0.007 4.007 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.101 0.899 35 H 0.134 0.866 36 H 0.270 0.730 37 H 0.161 0.839 38 H 0.073 0.927 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.072 0.928 42 H 0.101 0.899 43 H 0.074 0.926 44 H 0.086 0.914 45 H 0.075 0.925 46 H 0.073 0.927 47 H 0.106 0.894 48 H 0.034 0.966 49 H 0.061 0.939 50 H 0.105 0.895 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.201 -8.687 -17.815 21.852 hybrid contribution -0.958 0.348 -0.669 1.219 sum 8.242 -8.339 -18.484 21.889 Atomic orbital electron populations 1.21711 0.92916 1.02953 1.02654 1.20353 0.97265 0.85282 1.05156 1.23798 0.98742 0.95653 0.83202 1.84369 1.63644 1.24180 1.36295 1.28213 0.98643 0.86992 0.91592 1.70369 1.18058 1.20842 1.09312 1.21572 1.10025 0.91074 0.95759 1.16777 0.78514 0.83909 0.82504 1.90762 1.46122 1.22164 1.82915 1.47930 1.54646 1.22663 1.06253 1.22907 0.93905 0.82843 1.06122 1.21842 1.00763 0.96973 0.96956 1.21515 0.99328 0.99259 0.94282 1.21965 0.98924 0.93562 0.98102 0.91244 1.20852 0.91811 0.91905 0.89455 0.94938 1.22710 0.97451 0.99257 0.97450 1.22999 0.99709 1.00016 0.95985 1.21699 0.89366 0.90582 0.94373 1.44574 1.12828 1.32854 1.41228 1.18991 0.88455 1.04789 1.22268 0.90792 1.24738 0.98256 0.97387 1.00053 1.69896 1.35253 1.18543 1.33247 0.86177 0.84278 0.77889 0.77816 1.21708 1.21766 1.20851 1.21859 1.00622 0.99338 0.78832 0.91420 0.92712 0.91043 0.89874 0.86649 0.72969 0.83936 0.92681 0.91608 0.92096 0.92783 0.89864 0.92635 0.91449 0.92506 0.92690 0.89359 0.96598 0.93892 0.89548 0.91566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.89 37.16 0.37 -0.96 16 2 C -0.04 -0.41 5.87 -27.89 -0.16 -0.57 16 3 C 0.04 0.48 6.69 -35.08 -0.23 0.24 16 4 O -0.20 -1.88 10.73 6.51 0.07 -1.81 16 5 C 0.17 1.39 13.19 51.96 0.69 2.08 16 6 N -0.46 -5.35 7.74 -11.48 -0.09 -5.44 16 7 C -0.06 -0.87 6.72 -83.02 -0.56 -1.43 16 8 C 0.60 9.48 7.68 -12.52 -0.10 9.38 16 9 O -0.54 -9.38 14.33 5.27 0.08 -9.31 16 10 N -0.58 -9.19 2.97 -174.03 -0.52 -9.71 16 11 C 0.06 0.91 6.33 -3.71 -0.02 0.89 16 12 C -0.13 -1.97 6.08 -26.61 -0.16 -2.13 16 13 C -0.11 -1.92 4.73 -26.69 -0.13 -2.04 16 14 C -0.10 -1.94 2.11 -90.50 -0.19 -2.14 16 15 H 0.07 1.50 7.98 -51.93 -0.41 1.08 16 16 C 0.17 3.43 2.92 -66.95 -0.20 3.23 16 17 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 18 C -0.13 -2.28 5.14 -24.90 -0.13 -2.41 16 19 C -0.15 -2.82 7.09 -24.58 -0.17 -3.00 16 20 C 0.16 3.93 5.68 -2.35 -0.01 3.92 16 21 N -0.59 -14.62 2.39 -162.31 -0.39 -15.01 16 22 C -0.22 -5.94 9.84 -15.06 -0.15 -6.09 16 23 H 0.07 2.02 7.83 -52.49 -0.41 1.61 16 24 C -0.01 -0.24 5.48 -17.43 -0.10 -0.34 16 25 N -0.92 -26.71 10.26 55.49 0.57 -26.14 16 26 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16 27 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 28 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 29 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 30 C 0.12 1.89 5.57 -3.71 -0.02 1.87 16 31 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.57 8.14 -51.92 -0.42 0.15 16 35 H 0.12 1.22 6.63 -51.93 -0.34 0.88 16 36 H 0.25 0.66 8.06 -52.49 -0.42 0.24 16 37 H 0.14 1.91 3.67 -76.83 -0.28 1.63 16 38 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.05 0.92 6.02 -51.93 -0.31 0.60 16 42 H 0.08 1.83 7.59 -51.93 -0.39 1.44 16 43 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 44 H 0.07 1.12 5.51 -51.93 -0.29 0.83 16 45 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 46 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.09 2.40 6.29 -51.93 -0.33 2.07 16 48 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 49 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 50 H 0.09 1.49 7.04 -51.93 -0.37 1.13 16 51 H 0.07 1.00 7.06 -51.93 -0.37 0.64 16 LS Contribution 390.01 15.07 5.88 5.88 Total: -1.00 -32.07 390.01 -8.84 -40.91 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -8.13 Total: 2.81 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: -1.28 Total: 0.51 kcal Atomic # 7 Polarization: -55.87 SS G_CDS: -0.42 Total: -56.30 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: 0.15 Total: -11.11 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.07 -8.84 -40.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963273782.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.892 kcal (2) G-P(sol) polarization free energy of solvation -32.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds