Wall clock time and date at job start Wed Apr 1 2020 06:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50693 * 109.47448 * 2 1 4 4 O 1.34257 * 126.52679 * 269.96218 * 3 2 1 5 5 C 1.34050 * 108.22969 * 180.02562 * 4 3 2 6 6 N 1.29939 * 109.24174 * 359.74542 * 5 4 3 7 7 C 1.36068 * 108.47462 * 0.40707 * 6 5 4 8 8 C 1.47422 * 126.44890 * 179.86308 * 7 6 5 9 9 O 1.21609 * 120.00319 * 173.35380 * 8 7 6 10 10 N 1.34776 * 119.99827 * 353.35904 * 8 7 6 11 11 C 1.46930 * 120.63061 * 354.09840 * 10 8 7 12 12 C 1.53194 * 108.77733 * 126.37189 * 11 10 8 13 13 C 1.53041 * 109.33653 * 54.61688 * 12 11 10 14 14 C 1.53035 * 109.54275 * 298.68340 * 13 12 11 15 15 H 1.09005 * 109.50145 * 301.35454 * 14 13 12 16 16 C 1.52998 * 109.50023 * 181.28521 * 14 13 12 17 17 H 1.09006 * 109.87774 * 181.22300 * 16 14 13 18 18 C 1.54321 * 109.88320 * 302.24208 * 16 14 13 19 19 C 1.55156 * 102.94221 * 141.61145 * 18 16 14 20 20 C 1.54916 * 101.58013 * 324.49397 * 19 18 16 21 21 N 1.47027 * 109.88109 * 60.21354 * 16 14 13 22 22 C 1.36932 * 125.65189 * 61.60377 * 21 16 14 23 23 H 1.08002 * 119.99859 * 5.85524 * 22 21 16 24 24 C 1.38817 * 119.99963 * 185.85252 * 22 21 16 25 25 N 1.31616 * 119.99882 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 119.99696 * 180.02562 * 24 22 21 27 27 H 1.48505 * 109.47291 * 90.00156 * 26 24 22 28 28 H 1.48500 * 109.47008 * 209.99754 * 26 24 22 29 29 H 1.48496 * 109.47758 * 330.00127 * 26 24 22 30 30 C 1.46924 * 120.63204 * 174.07652 * 10 8 7 31 31 H 1.09007 * 109.46721 * 299.99941 * 1 2 3 32 32 H 1.09004 * 109.47121 * 59.99438 * 1 2 3 33 33 H 1.08995 * 109.47091 * 180.02562 * 1 2 3 34 34 H 1.09007 * 109.46721 * 240.00059 * 2 1 3 35 35 H 1.09004 * 109.47121 * 120.00562 * 2 1 3 36 36 H 1.07997 * 125.37979 * 180.02562 * 5 4 3 37 37 H 1.09001 * 109.58592 * 6.58145 * 11 10 8 38 38 H 1.09003 * 109.70158 * 246.22543 * 11 10 8 39 39 H 1.08999 * 109.49762 * 174.58367 * 12 11 10 40 40 H 1.08996 * 109.49340 * 294.65254 * 12 11 10 41 41 H 1.09000 * 109.46322 * 58.67663 * 13 12 11 42 42 H 1.09005 * 109.45716 * 178.63319 * 13 12 11 43 43 H 1.08997 * 110.71843 * 259.96868 * 18 16 14 44 44 H 1.08994 * 110.71722 * 23.24731 * 18 16 14 45 45 H 1.08991 * 111.00726 * 82.57067 * 19 18 16 46 46 H 1.09005 * 111.00560 * 206.39201 * 19 18 16 47 47 H 1.09003 * 110.36587 * 155.84940 * 20 19 18 48 48 H 1.08993 * 110.37030 * 278.06291 * 20 19 18 49 49 H 0.97002 * 119.99679 * 179.97438 * 25 24 22 50 50 H 1.09006 * 109.58639 * 353.41882 * 30 10 8 51 51 H 1.09001 * 109.58878 * 113.84040 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 8 2.2995 2.1739 -1.0789 5 6 2.7240 3.3737 -0.6580 6 7 2.7256 3.3959 0.6412 7 6 2.3023 2.1844 1.0936 8 6 2.1573 1.7778 2.5032 9 8 1.6538 0.7055 2.7780 10 7 2.5825 2.5946 3.4873 11 6 3.3079 3.8327 3.1715 12 6 2.6034 5.0061 3.8597 13 6 2.4791 4.7150 5.3570 14 6 1.6357 3.4551 5.5652 15 1 0.6508 3.5990 5.1208 16 6 1.4852 3.1830 7.0633 17 1 0.9034 2.2744 7.2183 18 6 2.8774 3.0318 7.7116 19 6 2.7015 3.7389 9.0815 20 6 1.7418 4.8977 8.7122 21 7 0.8184 4.3206 7.7135 22 6 -0.4454 4.7694 7.4371 23 1 -1.0758 4.2203 6.7533 24 6 -0.9163 5.9299 8.0358 25 7 -0.1479 6.5991 8.8688 26 14 -2.6407 6.5415 7.6592 27 1 -3.5985 5.9495 8.6274 28 1 -2.6760 8.0219 7.7704 29 1 -3.0185 6.1396 6.2805 30 6 2.3292 2.2641 4.8963 31 1 -0.3633 0.5139 0.8901 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 1.8933 -0.5139 -0.8901 35 1 1.8933 -0.5139 0.8900 36 1 3.0143 4.1940 -1.2977 37 1 3.3104 3.9897 2.0929 38 1 4.3338 3.7598 3.5326 39 1 3.1851 5.9162 3.7131 40 1 1.6099 5.1362 3.4306 41 1 3.4715 4.5611 5.7807 42 1 1.9998 5.5593 5.8525 43 1 3.1262 1.9797 7.8500 44 1 3.6379 3.5336 7.1135 45 1 2.2442 3.0702 9.8105 46 1 3.6537 4.1217 9.4488 47 1 1.1890 5.2273 9.5920 48 1 2.2993 5.7294 8.2817 49 1 -0.4769 7.4103 9.2868 50 1 1.6859 1.3861 4.9558 51 1 3.2745 2.0617 5.3999 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963273782.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:01:32 Heat of formation + Delta-G solvation = 0.379084 kcal Electronic energy + Delta-G solvation = -32271.262061 eV Core-core repulsion = 28172.431719 eV Total energy + Delta-G solvation = -4098.830342 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.51825 -41.28191 -39.77949 -37.81136 -36.05816 -35.12538 -34.65194 -33.61517 -32.49367 -31.22345 -30.35460 -28.27051 -26.95114 -26.46203 -25.14867 -24.36637 -23.95542 -22.81219 -22.33700 -21.81495 -20.68028 -19.80585 -18.80240 -18.38599 -17.84387 -17.59402 -17.08132 -16.71888 -16.36280 -16.02631 -15.88284 -15.67687 -15.64665 -15.45594 -15.09792 -14.56642 -14.48476 -14.24808 -14.11703 -13.80559 -13.64165 -13.57139 -13.37598 -13.20378 -12.91922 -12.77929 -12.65596 -12.53133 -12.39901 -12.32049 -12.05457 -12.01867 -11.94532 -11.79919 -11.58032 -11.45023 -11.31964 -11.28337 -10.93642 -10.69107 -10.51629 -10.06923 -9.57157 -8.79924 -7.79312 -5.15919 0.03090 1.00992 1.42024 1.42578 1.51045 1.53731 1.96669 2.18038 2.48805 3.03043 3.34126 3.52170 3.60769 3.65395 3.82451 3.99161 4.06680 4.11511 4.15134 4.21590 4.25892 4.27790 4.29744 4.37846 4.43195 4.51106 4.56762 4.62622 4.75459 4.77072 4.80242 4.84537 4.86684 4.92363 4.96094 5.08642 5.10986 5.16629 5.22433 5.24968 5.29382 5.36497 5.44224 5.49511 5.56496 5.63991 5.73871 5.77842 5.85591 6.27484 6.31111 6.51447 7.02336 7.14756 7.83510 8.48904 9.26968 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013137 B = 0.003086 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2130.935012 B = 9072.156511 C = 9672.709863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.043 4.043 3 C 0.049 3.951 4 O -0.194 6.194 5 C 0.202 3.798 6 N -0.490 5.490 7 C -0.097 4.097 8 C 0.589 3.411 9 O -0.565 6.565 10 N -0.592 5.592 11 C 0.069 3.931 12 C -0.119 4.119 13 C -0.096 4.096 14 C -0.091 4.091 15 H 0.028 0.972 16 C 0.159 3.841 17 H 0.022 0.978 18 C -0.117 4.117 19 C -0.135 4.135 20 C 0.169 3.831 21 N -0.608 5.608 22 C -0.223 4.223 23 H 0.066 0.934 24 C -0.061 4.061 25 N -0.945 5.945 26 Si 0.966 3.034 27 H -0.286 1.286 28 H -0.292 1.292 29 H -0.279 1.279 30 C 0.126 3.874 31 H 0.034 0.966 32 H 0.065 0.935 33 H 0.087 0.913 34 H 0.114 0.886 35 H 0.100 0.900 36 H 0.307 0.693 37 H 0.158 0.842 38 H 0.073 0.927 39 H 0.086 0.914 40 H 0.037 0.963 41 H 0.072 0.928 42 H 0.036 0.964 43 H 0.088 0.912 44 H 0.082 0.918 45 H 0.059 0.941 46 H 0.083 0.917 47 H 0.050 0.950 48 H -0.007 1.007 49 H 0.245 0.755 50 H 0.073 0.927 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.430 -9.727 -21.019 25.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.081 4.081 3 C -0.008 4.008 4 O -0.080 6.080 5 C -0.025 4.025 6 N -0.218 5.218 7 C -0.214 4.214 8 C 0.377 3.623 9 O -0.446 6.446 10 N -0.322 5.322 11 C -0.052 4.052 12 C -0.158 4.158 13 C -0.134 4.134 14 C -0.113 4.113 15 H 0.047 0.953 16 C 0.052 3.948 17 H 0.040 0.960 18 C -0.154 4.154 19 C -0.174 4.174 20 C 0.044 3.956 21 N -0.332 5.332 22 C -0.353 4.353 23 H 0.084 0.916 24 C -0.254 4.254 25 N -0.595 5.595 26 Si 0.795 3.205 27 H -0.213 1.213 28 H -0.218 1.218 29 H -0.204 1.204 30 C 0.004 3.996 31 H 0.053 0.947 32 H 0.084 0.916 33 H 0.106 0.894 34 H 0.132 0.868 35 H 0.118 0.882 36 H 0.322 0.678 37 H 0.174 0.826 38 H 0.091 0.909 39 H 0.104 0.896 40 H 0.056 0.944 41 H 0.090 0.910 42 H 0.055 0.945 43 H 0.107 0.893 44 H 0.100 0.900 45 H 0.077 0.923 46 H 0.102 0.898 47 H 0.069 0.931 48 H 0.011 0.989 49 H 0.055 0.945 50 H 0.092 0.908 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 11.199 -9.600 -20.441 25.207 hybrid contribution -1.600 0.628 0.047 1.719 sum 9.599 -8.972 -20.394 24.260 Atomic orbital electron populations 1.21677 0.92907 1.03738 1.01500 1.20407 0.97145 0.84622 1.05883 1.24007 0.97601 0.96152 0.83074 1.84418 1.63615 1.24558 1.35422 1.29369 0.95121 0.87041 0.90997 1.70173 1.20020 1.20385 1.11246 1.21298 1.12678 0.92643 0.94826 1.17181 0.77789 0.83604 0.83698 1.90735 1.47007 1.23218 1.83632 1.48008 1.54994 1.23331 1.05832 1.23022 0.94065 0.81172 1.06970 1.21773 1.00177 0.98863 0.94938 1.21372 0.99271 0.96872 0.95864 1.21720 0.97397 0.95294 0.96856 0.95343 1.21067 0.93375 0.89824 0.90549 0.95980 1.22683 0.95433 1.01299 0.96018 1.22871 0.99529 0.97976 0.97007 1.21482 0.89578 0.92053 0.92511 1.44766 1.12485 1.33712 1.42189 1.19179 0.89822 1.04753 1.21500 0.91628 1.25426 1.01608 0.97854 1.00484 1.70112 1.36533 1.18631 1.34220 0.85262 0.80505 0.77052 0.77659 1.21349 1.21835 1.20417 1.21637 1.00995 0.97260 0.79735 0.94661 0.91620 0.89370 0.86778 0.88219 0.67832 0.82609 0.90883 0.89577 0.94432 0.90988 0.94528 0.89335 0.89986 0.92266 0.89828 0.93147 0.98931 0.94537 0.90817 0.89294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 9.89 71.98 0.71 -1.75 16 2 C -0.04 -0.75 5.87 29.85 0.18 -0.58 16 3 C 0.05 1.01 6.69 25.18 0.17 1.18 16 4 O -0.19 -3.04 10.73 0.38 0.00 -3.03 16 5 C 0.20 2.51 13.19 130.52 1.72 4.23 16 6 N -0.49 -10.39 7.74 -305.14 -2.36 -12.76 16 7 C -0.10 -2.50 6.72 40.41 0.27 -2.23 16 8 C 0.59 18.73 7.68 86.66 0.67 19.40 16 9 O -0.57 -20.05 14.33 -4.06 -0.06 -20.11 16 10 N -0.59 -18.31 2.97 -822.76 -2.45 -20.76 16 11 C 0.07 1.85 6.33 86.36 0.55 2.39 16 12 C -0.12 -3.66 6.08 30.67 0.19 -3.47 16 13 C -0.10 -3.50 4.73 30.62 0.14 -3.36 16 14 C -0.09 -3.50 2.11 -10.72 -0.02 -3.52 16 15 H 0.03 1.30 7.98 -2.38 -0.02 1.28 16 16 C 0.16 6.57 2.92 45.34 0.13 6.71 16 17 H 0.02 0.97 8.14 -2.38 -0.02 0.95 16 18 C -0.12 -3.83 5.14 31.78 0.16 -3.67 16 19 C -0.14 -4.97 7.09 31.99 0.23 -4.75 16 20 C 0.17 8.32 5.68 86.79 0.49 8.81 16 21 N -0.61 -31.24 2.39 -667.41 -1.59 -32.84 16 22 C -0.22 -12.81 9.84 84.04 0.83 -11.99 16 23 H 0.07 3.78 7.83 -2.91 -0.02 3.75 16 24 C -0.06 -3.54 5.48 84.86 0.47 -3.07 16 25 N -0.95 -57.22 10.26 21.65 0.22 -57.00 16 26 Si 0.97 47.51 29.55 68.60 2.03 49.54 16 27 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 28 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 29 H -0.28 -13.36 7.11 99.48 0.71 -12.66 16 30 C 0.13 4.09 5.57 86.36 0.48 4.57 16 31 H 0.03 0.83 8.14 -2.38 -0.02 0.81 16 32 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 33 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.11 1.25 8.14 -2.38 -0.02 1.23 16 35 H 0.10 2.08 6.63 -2.38 -0.02 2.06 16 36 H 0.31 -0.08 8.06 -2.91 -0.02 -0.10 16 37 H 0.16 3.89 3.67 -51.56 -0.19 3.70 16 38 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 40 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.07 2.34 6.02 -2.39 -0.01 2.32 16 42 H 0.04 1.67 7.59 -2.38 -0.02 1.65 16 43 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 44 H 0.08 2.47 5.51 -2.39 -0.01 2.46 16 45 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 46 H 0.08 2.62 8.14 -2.38 -0.02 2.60 16 47 H 0.05 2.86 6.29 -2.39 -0.02 2.85 16 48 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 49 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 50 H 0.07 2.58 7.04 -2.38 -0.02 2.57 16 51 H 0.09 2.48 7.06 -2.39 -0.02 2.47 16 Total: -1.00 -75.51 390.01 3.91 -71.60 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: 0.75 Total: 16.43 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: 7.36 Total: 8.92 kcal Atomic # 7 Polarization: -117.17 SS G_CDS: -6.18 Total: -123.35 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: -0.05 Total: -23.14 kcal Atomic # 14 Polarization: 47.51 SS G_CDS: 2.03 Total: 49.54 kcal Total: -75.51 3.91 -71.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963273782.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.979 kcal (2) G-P(sol) polarization free energy of solvation -75.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds