Wall clock time and date at job start Wed Apr 1 2020 06:01:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.50704 * 109.46865 * 2 1
4 4 O 1.34250 * 126.52672 * 270.02733 * 3 2 1
5 5 C 1.34053 * 108.22793 * 179.97438 * 4 3 2
6 6 N 1.29933 * 109.24264 * 359.72421 * 5 4 3
7 7 C 1.36072 * 108.47486 * 0.44377 * 6 5 4
8 8 C 1.47423 * 126.44838 * 179.83147 * 7 6 5
9 9 O 1.21603 * 120.00273 * 173.45583 * 8 7 6
10 10 N 1.34778 * 119.99646 * 353.44894 * 8 7 6
11 11 C 1.46922 * 120.63330 * 4.80402 * 10 8 7
12 12 C 1.53195 * 108.77403 * 233.62795 * 11 10 8
13 13 C 1.53039 * 109.31254 * 305.36301 * 12 11 10
14 14 C 1.53043 * 109.53762 * 61.36683 * 13 12 11
15 15 H 1.08993 * 109.49903 * 58.61894 * 14 13 12
16 16 C 1.53000 * 109.49553 * 178.68437 * 14 13 12
17 17 H 1.08999 * 109.87683 * 298.36019 * 16 14 13
18 18 C 1.54323 * 109.88378 * 59.37761 * 16 14 13
19 19 C 1.55162 * 102.93991 * 141.60679 * 18 16 14
20 20 C 1.54900 * 101.58544 * 324.49733 * 19 18 16
21 21 N 1.47029 * 109.87850 * 177.34515 * 16 14 13
22 22 C 1.36932 * 125.64901 * 61.61313 * 21 16 14
23 23 H 1.08007 * 119.99837 * 5.84258 * 22 21 16
24 24 C 1.38805 * 120.00015 * 185.85332 * 22 21 16
25 25 N 1.31620 * 119.99989 * 359.97438 * 24 22 21
26 26 Si 1.86801 * 119.99989 * 179.97438 * 24 22 21
27 27 H 1.48493 * 109.47133 * 60.00125 * 26 24 22
28 28 H 1.48501 * 109.47229 * 179.97438 * 26 24 22
29 29 H 1.48505 * 109.47111 * 299.99563 * 26 24 22
30 30 C 1.46933 * 120.62852 * 184.82033 * 10 8 7
31 31 H 1.09000 * 109.47557 * 59.99579 * 1 2 3
32 32 H 1.09007 * 109.47034 * 180.02562 * 1 2 3
33 33 H 1.08999 * 109.46958 * 299.99532 * 1 2 3
34 34 H 1.08999 * 109.46958 * 240.00468 * 2 1 3
35 35 H 1.09000 * 109.47557 * 120.00421 * 2 1 3
36 36 H 1.07997 * 125.37700 * 179.97438 * 5 4 3
37 37 H 1.08996 * 109.59219 * 113.84038 * 11 10 8
38 38 H 1.09003 * 109.58626 * 353.40956 * 11 10 8
39 39 H 1.09000 * 109.49851 * 65.31660 * 12 11 10
40 40 H 1.09006 * 109.49943 * 185.38055 * 12 11 10
41 41 H 1.09000 * 109.46059 * 181.38489 * 13 12 11
42 42 H 1.09000 * 109.46287 * 301.34560 * 13 12 11
43 43 H 1.09003 * 110.72239 * 259.97091 * 18 16 14
44 44 H 1.09004 * 110.72381 * 23.24822 * 18 16 14
45 45 H 1.08999 * 111.00271 * 82.57582 * 19 18 16
46 46 H 1.09000 * 111.00230 * 206.38341 * 19 18 16
47 47 H 1.08996 * 110.36921 * 155.84320 * 20 19 18
48 48 H 1.09003 * 110.37168 * 278.06227 * 20 19 18
49 49 H 0.97009 * 119.99928 * 180.02562 * 25 24 22
50 50 H 1.08998 * 109.58415 * 6.58570 * 30 10 8
51 51 H 1.08994 * 109.70385 * 246.23022 * 30 10 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4209 0.0000
4 8 2.2981 2.1744 -1.0788
5 6 2.7219 3.3745 -0.6579
6 7 2.7238 3.3966 0.6412
7 6 2.3022 2.1845 1.0937
8 6 2.1587 1.7773 2.5033
9 8 1.6584 0.7036 2.7781
10 7 2.5821 2.5952 3.4873
11 6 3.0918 3.9378 3.1775
12 6 4.4795 4.0958 3.8068
13 6 4.3950 3.7854 5.3030
14 6 3.9369 2.3386 5.5005
15 1 4.6385 1.6646 5.0091
16 6 3.8843 2.0193 6.9959
17 1 4.8787 2.1186 7.4313
18 6 2.9036 2.9781 7.7032
19 6 2.2098 2.0600 8.7440
20 6 2.1273 0.7202 7.9709
21 7 3.3845 0.6514 7.1977
22 6 3.9842 -0.4927 6.7432
23 1 4.9519 -0.4422 6.2662
24 6 3.3483 -1.7171 6.8952
25 7 2.1691 -1.7786 7.4767
26 14 4.1661 -3.2777 6.2744
27 1 5.4685 -3.4618 6.9636
28 1 3.2886 -4.4421 6.5561
29 1 4.3915 -3.1698 4.8105
30 6 2.5431 2.1607 4.8904
31 1 -0.3634 0.5139 -0.8899
32 1 -0.3633 -1.0277 0.0005
33 1 -0.3633 0.5138 0.8900
34 1 1.8933 -0.5138 -0.8900
35 1 1.8934 -0.5139 0.8899
36 1 3.0119 4.1949 -1.2976
37 1 2.4168 4.6887 3.5880
38 1 3.1646 4.0607 2.0968
39 1 5.1757 3.4053 3.3308
40 1 4.8285 5.1189 3.6662
41 1 5.3762 3.9210 5.7580
42 1 3.6802 4.4601 5.7741
43 1 3.4432 3.7848 8.1995
44 1 2.1766 3.3771 6.9958
45 1 2.8197 1.9563 9.6415
46 1 1.2152 2.4312 8.9909
47 1 2.0655 -0.1162 8.6670
48 1 1.2667 0.7206 7.3019
49 1 1.7249 -2.6344 7.5832
50 1 2.2537 1.1110 4.9400
51 1 1.8228 2.7647 5.4422
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000963273784.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 06:01:37
Heat of formation + Delta-G solvation = 21.847351 kcal
Electronic energy + Delta-G solvation = -32808.532651 eV
Core-core repulsion = 28710.633243 eV
Total energy + Delta-G solvation = -4097.899408 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.93 seconds
Orbital eigenvalues (eV)
-43.62211 -39.83712 -38.12789 -36.33119 -35.07138 -34.18691 -32.82546 -32.12428
-30.86586 -29.42461 -29.16508 -26.78340 -25.61059 -24.49320 -24.07820 -23.30957
-22.66050 -21.61694 -20.93339 -20.04875 -19.43133 -18.29138 -17.41193 -16.96906
-16.60691 -16.37753 -15.76122 -15.21115 -14.81732 -14.71176 -14.53542 -14.38916
-14.01712 -13.86432 -13.75585 -13.47374 -13.04016 -12.85883 -12.69925 -12.67064
-12.14624 -11.96610 -11.79522 -11.64212 -11.51346 -11.38514 -11.31118 -11.20297
-11.02864 -10.86597 -10.69334 -10.60390 -10.10955 -9.99993 -9.95364 -9.77162
-9.72671 -9.52932 -9.43181 -9.29486 -9.05941 -8.49707 -8.11732 -6.71012
-5.57598 -2.94340 1.04879 1.93721 2.40332 3.26759 3.48400 3.50354
3.52943 3.53679 3.87753 4.48389 4.59100 4.68056 4.93836 5.10102
5.13335 5.17996 5.25355 5.34107 5.40256 5.47723 5.53137 5.60668
5.66121 5.68640 5.73456 5.78276 5.81599 5.84476 5.97441 6.01731
6.04512 6.13726 6.14630 6.20501 6.32080 6.34313 6.44462 6.48128
6.54873 6.64097 6.69503 6.81260 6.90727 7.03934 7.09294 7.17275
7.29907 7.66808 7.71714 7.82542 7.94902 8.43029 8.48332 9.32609
9.94542 10.60667 11.50435
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.009996 B = 0.004291 C = 0.003376
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2800.387178 B = 6524.219821 C = 8291.864130
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C -0.046 4.046
3 C 0.044 3.956
4 O -0.199 6.199
5 C 0.168 3.832
6 N -0.459 5.459
7 C -0.063 4.063
8 C 0.591 3.409
9 O -0.522 6.522
10 N -0.590 5.590
11 C 0.062 3.938
12 C -0.128 4.128
13 C -0.116 4.116
14 C -0.105 4.105
15 H 0.068 0.932
16 C 0.168 3.832
17 H 0.034 0.966
18 C -0.128 4.128
19 C -0.149 4.149
20 C 0.163 3.837
21 N -0.594 5.594
22 C -0.220 4.220
23 H 0.072 0.928
24 C -0.004 4.004
25 N -0.919 5.919
26 Si 0.907 3.093
27 H -0.287 1.287
28 H -0.291 1.291
29 H -0.286 1.286
30 C 0.126 3.874
31 H 0.052 0.948
32 H 0.071 0.929
33 H 0.066 0.934
34 H 0.083 0.917
35 H 0.119 0.881
36 H 0.253 0.747
37 H 0.055 0.945
38 H 0.148 0.852
39 H 0.059 0.941
40 H 0.065 0.935
41 H 0.058 0.942
42 H 0.060 0.940
43 H 0.055 0.945
44 H 0.064 0.936
45 H 0.056 0.944
46 H 0.054 0.946
47 H 0.089 0.911
48 H 0.016 0.984
49 H 0.251 0.749
50 H 0.111 0.889
51 H 0.060 0.940
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.142 13.498 -14.746 19.991
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.084 4.084
3 C -0.012 4.012
4 O -0.085 6.085
5 C -0.059 4.059
6 N -0.188 5.188
7 C -0.183 4.183
8 C 0.377 3.623
9 O -0.399 6.399
10 N -0.321 5.321
11 C -0.061 4.061
12 C -0.167 4.167
13 C -0.154 4.154
14 C -0.126 4.126
15 H 0.086 0.914
16 C 0.060 3.940
17 H 0.052 0.948
18 C -0.166 4.166
19 C -0.188 4.188
20 C 0.038 3.962
21 N -0.318 5.318
22 C -0.348 4.348
23 H 0.090 0.910
24 C -0.200 4.200
25 N -0.566 5.566
26 Si 0.738 3.262
27 H -0.214 1.214
28 H -0.217 1.217
29 H -0.212 1.212
30 C 0.005 3.995
31 H 0.071 0.929
32 H 0.090 0.910
33 H 0.085 0.915
34 H 0.101 0.899
35 H 0.137 0.863
36 H 0.269 0.731
37 H 0.073 0.927
38 H 0.164 0.836
39 H 0.078 0.922
40 H 0.084 0.916
41 H 0.076 0.924
42 H 0.079 0.921
43 H 0.074 0.926
44 H 0.083 0.917
45 H 0.075 0.925
46 H 0.073 0.927
47 H 0.107 0.893
48 H 0.034 0.966
49 H 0.062 0.938
50 H 0.129 0.871
51 H 0.078 0.922
Dipole moment (debyes) X Y Z Total
from point charges -0.307 13.159 -14.230 19.384
hybrid contribution 0.474 -0.922 -0.828 1.327
sum 0.168 12.237 -15.058 19.404
Atomic orbital electron populations
1.21692 0.92959 1.03033 1.02333 1.20397 0.97245 0.85243 1.05486
1.23823 0.98632 0.95642 0.83098 1.84361 1.63718 1.24075 1.36365
1.28157 0.99013 0.87072 0.91641 1.70279 1.18182 1.21134 1.09241
1.21691 1.09620 0.90966 0.96001 1.16795 0.79125 0.84067 0.82321
1.90857 1.44341 1.22132 1.82535 1.47971 1.61519 1.15458 1.07200
1.22907 0.94010 0.82650 1.06542 1.21855 0.97265 1.00950 0.96601
1.21634 1.01038 0.97431 0.95339 1.21950 0.96535 0.94919 0.99236
0.91381 1.20887 0.95693 0.86448 0.90971 0.94789 1.22674 0.98572
0.97210 0.98167 1.23015 0.98744 0.99032 0.98007 1.21711 0.87529
0.93271 0.93648 1.44600 1.25067 0.99384 1.62737 1.18877 1.00213
0.83773 1.31958 0.90970 1.24717 0.96578 0.97550 1.01176 1.69874
1.14830 1.23861 1.48079 0.86269 0.78126 0.83165 0.78652 1.21394
1.21656 1.21247 1.21768 0.96863 1.03272 0.77581 0.92890 0.90979
0.91485 0.89872 0.86302 0.73115 0.92685 0.83620 0.92235 0.91629
0.92350 0.92111 0.92594 0.91743 0.92477 0.92678 0.89278 0.96550
0.93833 0.87118 0.92194
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.60 9.89 37.16 0.37 -1.23 16
2 C -0.05 -0.56 5.87 -27.88 -0.16 -0.73 16
3 C 0.04 0.58 6.69 -35.08 -0.23 0.35 16
4 O -0.20 -2.13 10.73 6.52 0.07 -2.06 16
5 C 0.17 1.48 13.19 51.96 0.69 2.16 16
6 N -0.46 -5.70 7.68 -11.48 -0.09 -5.78 16
7 C -0.06 -0.96 6.75 -83.02 -0.56 -1.53 16
8 C 0.59 11.08 7.68 -12.52 -0.10 10.98 16
9 O -0.52 -11.44 14.32 5.27 0.08 -11.36 16
10 N -0.59 -10.53 2.97 -174.04 -0.52 -11.05 16
11 C 0.06 0.88 6.32 -3.71 -0.02 0.86 16
12 C -0.13 -1.72 6.08 -26.61 -0.16 -1.88 16
13 C -0.12 -1.72 4.89 -26.69 -0.13 -1.85 16
14 C -0.10 -1.97 2.10 -90.50 -0.19 -2.16 16
15 H 0.07 1.46 8.05 -51.93 -0.42 1.04 16
16 C 0.17 3.45 2.95 -66.95 -0.20 3.25 16
17 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16
18 C -0.13 -2.26 5.20 -24.89 -0.13 -2.39 16
19 C -0.15 -2.88 7.08 -24.58 -0.17 -3.05 16
20 C 0.16 3.99 5.68 -2.35 -0.01 3.98 16
21 N -0.59 -14.94 2.41 -162.31 -0.39 -15.33 16
22 C -0.22 -6.15 9.89 -15.06 -0.15 -6.30 16
23 H 0.07 1.99 7.83 -52.48 -0.41 1.58 16
24 C 0.00 -0.12 5.48 -17.43 -0.10 -0.21 16
25 N -0.92 -27.34 10.26 55.49 0.57 -26.77 16
26 Si 0.91 22.94 29.55 -169.99 -5.02 17.91 16
27 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16
28 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16
29 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16
30 C 0.13 2.51 5.27 -3.71 -0.02 2.49 16
31 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16
32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16
33 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16
34 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16
35 H 0.12 1.75 6.63 -51.93 -0.34 1.40 16
36 H 0.25 0.74 8.06 -52.49 -0.42 0.32 16
37 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16
38 H 0.15 1.99 3.62 -80.26 -0.29 1.70 16
39 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16
40 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16
41 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16
42 H 0.06 0.85 7.05 -51.93 -0.37 0.48 16
43 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16
44 H 0.06 1.09 5.43 -51.93 -0.28 0.81 16
45 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16
46 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16
47 H 0.09 2.46 6.29 -51.93 -0.33 2.13 16
48 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16
49 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16
50 H 0.11 2.77 6.65 -51.93 -0.35 2.43 16
51 H 0.06 1.16 5.97 -51.93 -0.31 0.85 16
LS Contribution 390.01 15.07 5.88 5.88
Total: -1.00 -33.16 390.01 -8.86 -42.03
By element:
Atomic # 1 Polarization: 11.94 SS G_CDS: -8.15 Total: 3.80 kcal
Atomic # 6 Polarization: 4.03 SS G_CDS: -1.29 Total: 2.74 kcal
Atomic # 7 Polarization: -58.51 SS G_CDS: -0.43 Total: -58.93 kcal
Atomic # 8 Polarization: -13.57 SS G_CDS: 0.15 Total: -13.42 kcal
Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.91 kcal
Total LS contribution 5.88 Total: 5.88 kcal
Total: -33.16 -8.86 -42.03 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000963273784.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 63.874 kcal
(2) G-P(sol) polarization free energy of solvation -33.165 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.710 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.862 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.027 kcal
(6) G-S(sol) free energy of system = (1) + (5) 21.847 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.93 seconds