Wall clock time and date at job start Wed Apr 1 2020 06:01:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.50704 * 109.46865 * 2 1
4 4 O 1.34250 * 126.52672 * 270.02733 * 3 2 1
5 5 C 1.34053 * 108.22793 * 179.97438 * 4 3 2
6 6 N 1.29933 * 109.24264 * 359.72421 * 5 4 3
7 7 C 1.36072 * 108.47486 * 0.44377 * 6 5 4
8 8 C 1.47423 * 126.44838 * 179.83147 * 7 6 5
9 9 O 1.21603 * 120.00273 * 173.45583 * 8 7 6
10 10 N 1.34778 * 119.99646 * 353.44894 * 8 7 6
11 11 C 1.46922 * 120.63330 * 4.80402 * 10 8 7
12 12 C 1.53195 * 108.77403 * 233.62795 * 11 10 8
13 13 C 1.53039 * 109.31254 * 305.36301 * 12 11 10
14 14 C 1.53043 * 109.53762 * 61.36683 * 13 12 11
15 15 H 1.08993 * 109.49903 * 58.61894 * 14 13 12
16 16 C 1.53000 * 109.49553 * 178.68437 * 14 13 12
17 17 H 1.08999 * 109.87683 * 298.36019 * 16 14 13
18 18 C 1.54323 * 109.88378 * 59.37761 * 16 14 13
19 19 C 1.55162 * 102.93991 * 141.60679 * 18 16 14
20 20 C 1.54900 * 101.58544 * 324.49733 * 19 18 16
21 21 N 1.47029 * 109.87850 * 177.34515 * 16 14 13
22 22 C 1.36932 * 125.64901 * 61.61313 * 21 16 14
23 23 H 1.08007 * 119.99837 * 5.84258 * 22 21 16
24 24 C 1.38805 * 120.00015 * 185.85332 * 22 21 16
25 25 N 1.31620 * 119.99989 * 359.97438 * 24 22 21
26 26 Si 1.86801 * 119.99989 * 179.97438 * 24 22 21
27 27 H 1.48493 * 109.47133 * 60.00125 * 26 24 22
28 28 H 1.48501 * 109.47229 * 179.97438 * 26 24 22
29 29 H 1.48505 * 109.47111 * 299.99563 * 26 24 22
30 30 C 1.46933 * 120.62852 * 184.82033 * 10 8 7
31 31 H 1.09000 * 109.47557 * 59.99579 * 1 2 3
32 32 H 1.09007 * 109.47034 * 180.02562 * 1 2 3
33 33 H 1.08999 * 109.46958 * 299.99532 * 1 2 3
34 34 H 1.08999 * 109.46958 * 240.00468 * 2 1 3
35 35 H 1.09000 * 109.47557 * 120.00421 * 2 1 3
36 36 H 1.07997 * 125.37700 * 179.97438 * 5 4 3
37 37 H 1.08996 * 109.59219 * 113.84038 * 11 10 8
38 38 H 1.09003 * 109.58626 * 353.40956 * 11 10 8
39 39 H 1.09000 * 109.49851 * 65.31660 * 12 11 10
40 40 H 1.09006 * 109.49943 * 185.38055 * 12 11 10
41 41 H 1.09000 * 109.46059 * 181.38489 * 13 12 11
42 42 H 1.09000 * 109.46287 * 301.34560 * 13 12 11
43 43 H 1.09003 * 110.72239 * 259.97091 * 18 16 14
44 44 H 1.09004 * 110.72381 * 23.24822 * 18 16 14
45 45 H 1.08999 * 111.00271 * 82.57582 * 19 18 16
46 46 H 1.09000 * 111.00230 * 206.38341 * 19 18 16
47 47 H 1.08996 * 110.36921 * 155.84320 * 20 19 18
48 48 H 1.09003 * 110.37168 * 278.06227 * 20 19 18
49 49 H 0.97009 * 119.99928 * 180.02562 * 25 24 22
50 50 H 1.08998 * 109.58415 * 6.58570 * 30 10 8
51 51 H 1.08994 * 109.70385 * 246.23022 * 30 10 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4209 0.0000
4 8 2.2981 2.1744 -1.0788
5 6 2.7219 3.3745 -0.6579
6 7 2.7238 3.3966 0.6412
7 6 2.3022 2.1845 1.0937
8 6 2.1587 1.7773 2.5033
9 8 1.6584 0.7036 2.7781
10 7 2.5821 2.5952 3.4873
11 6 3.0918 3.9378 3.1775
12 6 4.4795 4.0958 3.8068
13 6 4.3950 3.7854 5.3030
14 6 3.9369 2.3386 5.5005
15 1 4.6385 1.6646 5.0091
16 6 3.8843 2.0193 6.9959
17 1 4.8787 2.1186 7.4313
18 6 2.9036 2.9781 7.7032
19 6 2.2098 2.0600 8.7440
20 6 2.1273 0.7202 7.9709
21 7 3.3845 0.6514 7.1977
22 6 3.9842 -0.4927 6.7432
23 1 4.9519 -0.4422 6.2662
24 6 3.3483 -1.7171 6.8952
25 7 2.1691 -1.7786 7.4767
26 14 4.1661 -3.2777 6.2744
27 1 5.4685 -3.4618 6.9636
28 1 3.2886 -4.4421 6.5561
29 1 4.3915 -3.1698 4.8105
30 6 2.5431 2.1607 4.8904
31 1 -0.3634 0.5139 -0.8899
32 1 -0.3633 -1.0277 0.0005
33 1 -0.3633 0.5138 0.8900
34 1 1.8933 -0.5138 -0.8900
35 1 1.8934 -0.5139 0.8899
36 1 3.0119 4.1949 -1.2976
37 1 2.4168 4.6887 3.5880
38 1 3.1646 4.0607 2.0968
39 1 5.1757 3.4053 3.3308
40 1 4.8285 5.1189 3.6662
41 1 5.3762 3.9210 5.7580
42 1 3.6802 4.4601 5.7741
43 1 3.4432 3.7848 8.1995
44 1 2.1766 3.3771 6.9958
45 1 2.8197 1.9563 9.6415
46 1 1.2152 2.4312 8.9909
47 1 2.0655 -0.1162 8.6670
48 1 1.2667 0.7206 7.3019
49 1 1.7249 -2.6344 7.5832
50 1 2.2537 1.1110 4.9400
51 1 1.8228 2.7647 5.4422
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000963273784.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 06:01:36
Heat of formation + Delta-G solvation = 0.239317 kcal
Electronic energy + Delta-G solvation = -32809.469646 eV
Core-core repulsion = 28710.633243 eV
Total energy + Delta-G solvation = -4098.836402 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.92 seconds
Orbital eigenvalues (eV)
-44.54255 -41.27611 -39.72596 -37.84355 -36.07515 -35.17318 -34.67097 -33.72683
-32.27946 -31.15070 -30.41099 -28.38977 -26.89884 -26.49837 -25.13848 -24.32534
-24.08814 -22.71528 -22.32362 -21.75280 -20.74928 -19.80953 -18.78062 -18.40836
-17.88630 -17.61150 -17.18417 -16.75274 -16.25467 -16.04682 -15.84032 -15.68391
-15.62771 -15.43386 -15.10828 -14.54638 -14.41638 -14.23734 -14.03897 -13.91708
-13.72499 -13.63034 -13.20196 -13.06717 -12.94642 -12.78085 -12.73881 -12.65273
-12.50311 -12.42545 -12.11577 -12.06038 -11.90553 -11.77757 -11.49378 -11.38366
-11.33672 -11.19115 -11.11723 -10.69092 -10.48706 -10.09792 -9.52358 -8.79762
-7.78831 -5.15379 0.00914 1.02346 1.38119 1.42894 1.47487 1.49276
1.98282 2.19956 2.48741 3.01207 3.35114 3.49567 3.60526 3.66616
3.90010 3.97638 4.01419 4.10344 4.15818 4.18259 4.20975 4.24108
4.30196 4.33998 4.40632 4.48666 4.61467 4.67011 4.74233 4.79404
4.84908 4.87272 4.94038 4.95914 5.00109 5.07311 5.07504 5.15172
5.19575 5.21840 5.29783 5.31062 5.44966 5.49446 5.56711 5.57817
5.71266 5.82391 5.84848 6.29288 6.31018 6.53794 7.08138 7.14298
7.84219 8.48864 9.27539
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.009996 B = 0.004291 C = 0.003376
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2800.387178 B = 6524.219821 C = 8291.864130
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C -0.048 4.048
3 C 0.047 3.953
4 O -0.191 6.191
5 C 0.205 3.795
6 N -0.483 5.483
7 C -0.091 4.091
8 C 0.578 3.422
9 O -0.573 6.573
10 N -0.594 5.594
11 C 0.057 3.943
12 C -0.122 4.122
13 C -0.108 4.108
14 C -0.093 4.093
15 H 0.030 0.970
16 C 0.158 3.842
17 H 0.036 0.964
18 C -0.113 4.113
19 C -0.136 4.136
20 C 0.167 3.833
21 N -0.611 5.611
22 C -0.222 4.222
23 H 0.069 0.931
24 C -0.063 4.063
25 N -0.946 5.946
26 Si 0.964 3.036
27 H -0.273 1.273
28 H -0.292 1.292
29 H -0.290 1.290
30 C 0.140 3.860
31 H 0.075 0.925
32 H 0.081 0.919
33 H 0.035 0.965
34 H 0.113 0.887
35 H 0.083 0.917
36 H 0.314 0.686
37 H 0.069 0.931
38 H 0.160 0.840
39 H 0.043 0.957
40 H 0.105 0.895
41 H 0.073 0.927
42 H 0.081 0.919
43 H 0.097 0.903
44 H 0.072 0.928
45 H 0.064 0.936
46 H 0.080 0.920
47 H 0.051 0.949
48 H -0.019 1.019
49 H 0.243 0.757
50 H 0.047 0.953
51 H 0.066 0.934
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.248 17.468 -16.862 24.311
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C -0.085 4.085
3 C -0.010 4.010
4 O -0.078 6.078
5 C -0.022 4.022
6 N -0.212 5.212
7 C -0.209 4.209
8 C 0.366 3.634
9 O -0.453 6.453
10 N -0.324 5.324
11 C -0.064 4.064
12 C -0.160 4.160
13 C -0.146 4.146
14 C -0.115 4.115
15 H 0.048 0.952
16 C 0.051 3.949
17 H 0.054 0.946
18 C -0.151 4.151
19 C -0.174 4.174
20 C 0.042 3.958
21 N -0.335 5.335
22 C -0.351 4.351
23 H 0.086 0.914
24 C -0.256 4.256
25 N -0.596 5.596
26 Si 0.793 3.207
27 H -0.199 1.199
28 H -0.218 1.218
29 H -0.217 1.217
30 C 0.018 3.982
31 H 0.094 0.906
32 H 0.100 0.900
33 H 0.054 0.946
34 H 0.132 0.868
35 H 0.101 0.899
36 H 0.328 0.672
37 H 0.088 0.912
38 H 0.176 0.824
39 H 0.062 0.938
40 H 0.124 0.876
41 H 0.092 0.908
42 H 0.099 0.901
43 H 0.115 0.885
44 H 0.091 0.909
45 H 0.083 0.917
46 H 0.098 0.902
47 H 0.069 0.931
48 H -0.001 1.001
49 H 0.053 0.947
50 H 0.065 0.935
51 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges 1.125 17.199 -16.332 23.745
hybrid contribution 0.062 -2.082 -0.288 2.103
sum 1.186 15.117 -16.620 22.498
Atomic orbital electron populations
1.21644 0.92316 1.03606 1.01815 1.20360 0.97786 0.85213 1.05175
1.23805 0.98016 0.95914 0.83303 1.84408 1.63747 1.24593 1.35054
1.29510 0.94736 0.86911 0.91022 1.70093 1.20014 1.19876 1.11171
1.21209 1.12327 0.93040 0.94295 1.17404 0.78316 0.83529 0.84155
1.90823 1.46550 1.24272 1.83696 1.48119 1.61348 1.16876 1.06059
1.23234 0.94730 0.80610 1.07849 1.21841 0.96240 1.02819 0.95065
1.21597 1.02159 0.93934 0.96900 1.21761 0.94834 0.97500 0.97378
0.95162 1.21181 0.96441 0.84814 0.92441 0.94619 1.22647 0.97984
0.96968 0.97483 1.22874 1.00712 0.95941 0.97882 1.21466 0.86357
0.95319 0.92647 1.44818 1.25103 1.00791 1.62829 1.19122 1.00049
0.85178 1.30756 0.91350 1.25452 0.97436 1.00381 1.02311 1.70110
1.16098 1.23682 1.49669 0.85367 0.77738 0.79865 0.77736 1.19866
1.21789 1.21720 1.21355 0.97647 0.99632 0.79601 0.90568 0.89970
0.94595 0.86824 0.89862 0.67160 0.91247 0.82363 0.93793 0.87626
0.90800 0.90086 0.88484 0.90910 0.91705 0.90169 0.93059 1.00075
0.94731 0.93456 0.91572
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.14 9.89 71.98 0.71 -2.43 16
2 C -0.05 -1.20 5.87 29.85 0.18 -1.03 16
3 C 0.05 1.21 6.69 25.19 0.17 1.38 16
4 O -0.19 -3.50 10.73 0.42 0.00 -3.50 16
5 C 0.21 2.71 13.19 130.52 1.72 4.44 16
6 N -0.48 -10.82 7.68 -305.15 -2.34 -13.16 16
7 C -0.09 -2.79 6.75 40.41 0.27 -2.52 16
8 C 0.58 23.09 7.68 86.66 0.67 23.76 16
9 O -0.57 -27.82 14.32 -4.04 -0.06 -27.88 16
10 N -0.59 -21.89 2.97 -822.78 -2.45 -24.33 16
11 C 0.06 1.52 6.32 86.36 0.55 2.07 16
12 C -0.12 -2.90 6.08 30.67 0.19 -2.72 16
13 C -0.11 -2.89 4.89 30.62 0.15 -2.74 16
14 C -0.09 -3.56 2.10 -10.72 -0.02 -3.59 16
15 H 0.03 1.36 8.05 -2.39 -0.02 1.34 16
16 C 0.16 6.48 2.95 45.34 0.13 6.61 16
17 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16
18 C -0.11 -3.72 5.20 31.78 0.17 -3.55 16
19 C -0.14 -5.11 7.08 31.98 0.23 -4.88 16
20 C 0.17 8.63 5.68 86.79 0.49 9.13 16
21 N -0.61 -32.30 2.41 -667.44 -1.61 -33.91 16
22 C -0.22 -13.11 9.89 84.03 0.83 -12.28 16
23 H 0.07 3.99 7.83 -2.91 -0.02 3.96 16
24 C -0.06 -3.83 5.48 84.86 0.47 -3.36 16
25 N -0.95 -60.18 10.26 21.65 0.22 -59.96 16
26 Si 0.96 49.64 29.55 68.60 2.03 51.67 16
27 H -0.27 -13.29 7.11 99.48 0.71 -12.58 16
28 H -0.29 -14.97 7.11 99.48 0.71 -14.26 16
29 H -0.29 -14.99 7.11 99.48 0.71 -14.29 16
30 C 0.14 5.87 5.27 86.36 0.46 6.33 16
31 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16
32 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16
33 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16
34 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16
35 H 0.08 2.71 6.63 -2.39 -0.02 2.70 16
36 H 0.31 -0.29 8.06 -2.91 -0.02 -0.31 16
37 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16
38 H 0.16 3.95 3.62 -58.32 -0.21 3.74 16
39 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16
40 H 0.11 1.77 8.14 -2.38 -0.02 1.75 16
41 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16
42 H 0.08 1.90 7.05 -2.39 -0.02 1.88 16
43 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16
44 H 0.07 2.29 5.43 -2.38 -0.01 2.28 16
45 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16
46 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16
47 H 0.05 3.02 6.29 -2.39 -0.02 3.00 16
48 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16
49 H 0.24 15.19 8.31 -92.70 -0.77 14.42 16
50 H 0.05 2.60 6.65 -2.39 -0.02 2.59 16
51 H 0.07 2.63 5.97 -2.39 -0.01 2.61 16
Total: -1.00 -83.07 390.01 3.88 -79.20
By element:
Atomic # 1 Polarization: 16.54 SS G_CDS: 0.73 Total: 17.27 kcal
Atomic # 6 Polarization: 7.27 SS G_CDS: 7.35 Total: 14.62 kcal
Atomic # 7 Polarization: -125.20 SS G_CDS: -6.18 Total: -131.37 kcal
Atomic # 8 Polarization: -31.33 SS G_CDS: -0.05 Total: -31.38 kcal
Atomic # 14 Polarization: 49.64 SS G_CDS: 2.03 Total: 51.67 kcal
Total: -83.07 3.88 -79.20 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000963273784.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 79.436 kcal
(2) G-P(sol) polarization free energy of solvation -83.072 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.636 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.876 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.197 kcal
(6) G-S(sol) free energy of system = (1) + (5) 0.239 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.92 seconds