Wall clock time and date at job start Wed Apr 1 2020 05:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50702 * 109.46956 * 2 1 4 4 N 1.30010 * 127.33272 * 270.03886 * 3 2 1 5 5 O 1.20661 * 112.30113 * 179.97438 * 4 3 2 6 6 C 1.33493 * 113.15521 * 359.71932 * 5 4 3 7 7 C 1.37363 * 106.34120 * 0.44871 * 6 5 4 8 8 C 1.47394 * 128.56326 * 179.85199 * 7 6 5 9 9 O 1.21612 * 119.99888 * 141.93114 * 8 7 6 10 10 N 1.34775 * 120.00726 * 321.93362 * 8 7 6 11 11 C 1.46929 * 120.62602 * 357.18348 * 10 8 7 12 12 C 1.53189 * 108.77579 * 233.63100 * 11 10 8 13 13 C 1.53036 * 109.31434 * 305.36691 * 12 11 10 14 14 C 1.53045 * 109.53752 * 61.36506 * 13 12 11 15 15 H 1.08995 * 109.49279 * 58.58790 * 14 13 12 16 16 C 1.53000 * 109.49578 * 178.68261 * 14 13 12 17 17 H 1.08998 * 109.87431 * 301.12808 * 16 14 13 18 18 C 1.54323 * 109.88086 * 179.97438 * 16 14 13 19 19 C 1.55157 * 102.94153 * 218.39117 * 18 16 14 20 20 C 1.54909 * 101.58379 * 35.50220 * 19 18 16 21 21 N 1.47022 * 109.88082 * 62.14863 * 16 14 13 22 22 C 1.36934 * 125.65010 * 298.31677 * 21 16 14 23 23 H 1.07999 * 120.00329 * 139.75178 * 22 21 16 24 24 C 1.38815 * 120.00140 * 319.75891 * 22 21 16 25 25 N 1.31617 * 120.00222 * 167.48138 * 24 22 21 26 26 Si 1.86806 * 119.99781 * 347.48190 * 24 22 21 27 27 H 1.48500 * 109.47174 * 86.71546 * 26 24 22 28 28 H 1.48497 * 109.46915 * 206.71579 * 26 24 22 29 29 H 1.48499 * 109.47116 * 326.71355 * 26 24 22 30 30 C 1.46918 * 120.63427 * 177.20783 * 10 8 7 31 31 H 1.09005 * 109.47340 * 60.00512 * 1 2 3 32 32 H 1.09004 * 109.47511 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47678 * 299.99909 * 1 2 3 34 34 H 1.08997 * 109.47045 * 239.99820 * 2 1 3 35 35 H 1.09008 * 109.47004 * 119.99880 * 2 1 3 36 36 H 1.08002 * 126.83148 * 180.31044 * 6 5 4 37 37 H 1.09005 * 109.58129 * 113.84117 * 11 10 8 38 38 H 1.08999 * 109.58575 * 353.42561 * 11 10 8 39 39 H 1.09006 * 109.49541 * 185.41329 * 12 11 10 40 40 H 1.09000 * 109.49762 * 65.31874 * 12 11 10 41 41 H 1.09001 * 109.45737 * 181.38865 * 13 12 11 42 42 H 1.09005 * 109.46035 * 301.34541 * 13 12 11 43 43 H 1.09002 * 110.72064 * 336.75559 * 18 16 14 44 44 H 1.08998 * 110.72355 * 100.02716 * 18 16 14 45 45 H 1.08994 * 111.00452 * 277.42723 * 19 18 16 46 46 H 1.09002 * 111.00552 * 153.57734 * 19 18 16 47 47 H 1.08994 * 110.36955 * 204.15575 * 20 19 18 48 48 H 1.08995 * 110.46040 * 81.87650 * 20 19 18 49 49 H 0.97006 * 120.00148 * 179.97438 * 25 24 22 50 50 H 1.08992 * 109.59083 * 246.15407 * 30 10 8 51 51 H 1.08998 * 109.58868 * 6.44202 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 7 2.2944 2.1644 -1.0337 5 8 2.6825 3.2632 -0.7208 6 6 2.7401 3.4429 0.6007 7 6 2.3298 2.2619 1.1696 8 6 2.2109 1.9231 2.5992 9 8 1.2848 1.2365 2.9864 10 7 3.1284 2.3743 3.4773 11 6 4.2860 3.1530 3.0166 12 6 5.5648 2.4926 3.5411 13 6 5.4714 2.3451 5.0615 14 6 4.2836 1.4477 5.4167 15 1 4.4098 0.4735 4.9444 16 6 4.2107 1.2743 6.9351 17 1 5.1376 0.8341 7.3027 18 6 3.0150 0.3708 7.3033 19 6 2.4646 1.0320 8.5945 20 6 2.7032 2.5342 8.3009 21 7 3.9872 2.5780 7.5770 22 6 4.8318 3.6540 7.5137 23 1 4.4300 4.6500 7.4005 24 6 6.2046 3.4646 7.5950 25 7 7.0239 4.4487 7.2909 26 14 6.8891 1.8128 8.1361 27 1 7.0156 0.9191 6.9569 28 1 8.2250 2.0091 8.7541 29 1 5.9707 1.1971 9.1275 30 6 2.9903 2.0964 4.9133 31 1 -0.3634 0.5138 -0.8901 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8932 -0.5138 -0.8899 35 1 1.8933 -0.5139 0.8901 36 1 3.0502 4.3380 1.1195 37 1 4.2171 4.1713 3.3993 38 1 4.3042 3.1706 1.9269 39 1 6.4248 3.1127 3.2878 40 1 5.6789 1.5085 3.0865 41 1 6.3905 1.8979 5.4401 42 1 5.3325 3.3272 5.5137 43 1 2.2642 0.3838 6.5132 44 1 3.3483 -0.6475 7.5034 45 1 3.0296 0.7104 9.4694 46 1 1.4022 0.8221 8.7187 47 1 2.7736 3.0963 9.2320 48 1 1.9026 2.9324 7.6777 49 1 7.9832 4.3164 7.3481 50 1 2.8158 3.0284 5.4508 51 1 2.1521 1.4187 5.0755 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963357343.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:51:55 Heat of formation + Delta-G solvation = 57.404235 kcal Electronic energy + Delta-G solvation = -33031.097227 eV Core-core repulsion = 28934.739682 eV Total energy + Delta-G solvation = -4096.357546 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -45.04536 -40.11900 -38.48413 -36.43913 -35.33853 -33.31565 -32.80414 -31.77734 -31.35668 -30.95540 -30.00668 -27.31073 -25.93302 -24.73547 -24.43766 -23.48640 -22.80237 -21.00898 -20.71197 -20.18085 -19.77619 -19.01036 -17.87379 -17.47717 -16.88202 -16.60749 -16.20202 -15.60248 -15.05915 -14.87534 -14.58144 -14.39016 -13.98148 -13.74178 -13.57670 -13.48099 -13.25551 -13.16904 -12.84392 -12.73663 -12.57776 -12.09976 -11.95458 -11.80359 -11.71880 -11.61941 -11.44811 -11.18431 -11.03823 -10.89747 -10.71684 -10.45526 -10.40802 -10.18502 -10.13848 -10.13640 -9.99078 -9.80753 -9.64838 -9.49355 -9.30384 -8.50067 -8.24171 -6.78745 -6.09848 -3.54180 1.03274 1.69039 2.70903 2.98376 3.24268 3.27081 3.39838 3.44418 3.88890 4.15940 4.42444 4.60019 4.81250 4.93595 4.99282 5.04707 5.12727 5.15249 5.19507 5.30792 5.33342 5.37390 5.40547 5.55312 5.58232 5.66965 5.67939 5.71634 5.75653 5.83589 5.94468 5.95939 6.10476 6.10893 6.17137 6.20862 6.25061 6.31673 6.38438 6.47279 6.57123 6.65641 6.71173 6.78138 6.86546 6.89093 7.00238 7.55096 7.60087 7.93530 8.05060 8.22164 8.25506 8.78593 9.56281 10.20786 11.04553 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015401 B = 0.003663 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.579453 B = 7643.145044 C = 8639.019624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.043 4.043 3 C 0.067 3.933 4 N -0.359 5.359 5 O 0.095 5.905 6 C -0.014 4.014 7 C -0.240 4.240 8 C 0.589 3.411 9 O -0.536 6.536 10 N -0.594 5.594 11 C 0.098 3.902 12 C -0.131 4.131 13 C -0.137 4.137 14 C -0.097 4.097 15 H 0.050 0.950 16 C 0.151 3.849 17 H 0.037 0.963 18 C -0.134 4.134 19 C -0.136 4.136 20 C 0.128 3.872 21 N -0.603 5.603 22 C -0.247 4.247 23 H 0.083 0.917 24 C 0.048 3.952 25 N -0.902 5.902 26 Si 0.884 3.116 27 H -0.278 1.278 28 H -0.306 1.306 29 H -0.273 1.273 30 C 0.128 3.872 31 H 0.053 0.947 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.229 0.771 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.049 0.951 41 H 0.055 0.945 42 H 0.133 0.867 43 H 0.072 0.928 44 H 0.060 0.940 45 H 0.062 0.938 46 H 0.062 0.938 47 H 0.048 0.952 48 H 0.026 0.974 49 H 0.265 0.735 50 H 0.087 0.913 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.755 -4.822 -11.125 14.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.081 4.081 3 C -0.096 4.096 4 N -0.066 5.066 5 O 0.035 5.965 6 C -0.096 4.096 7 C -0.247 4.247 8 C 0.376 3.624 9 O -0.414 6.414 10 N -0.325 5.325 11 C -0.024 4.024 12 C -0.169 4.169 13 C -0.174 4.174 14 C -0.118 4.118 15 H 0.068 0.932 16 C 0.045 3.955 17 H 0.054 0.946 18 C -0.172 4.172 19 C -0.174 4.174 20 C 0.003 3.997 21 N -0.329 5.329 22 C -0.375 4.375 23 H 0.100 0.900 24 C -0.153 4.153 25 N -0.543 5.543 26 Si 0.716 3.284 27 H -0.206 1.206 28 H -0.234 1.234 29 H -0.199 1.199 30 C 0.007 3.993 31 H 0.072 0.928 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.100 0.900 35 H 0.108 0.892 36 H 0.245 0.755 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.090 0.910 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.151 0.849 43 H 0.091 0.909 44 H 0.079 0.921 45 H 0.081 0.919 46 H 0.081 0.919 47 H 0.066 0.934 48 H 0.044 0.956 49 H 0.075 0.925 50 H 0.105 0.895 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.058 -5.178 -12.230 15.535 hybrid contribution 0.860 -0.949 1.155 1.725 sum -7.198 -6.127 -11.075 14.560 Atomic orbital electron populations 1.21692 0.93395 1.02429 1.02683 1.19955 0.97014 0.87338 1.03796 1.24823 0.99487 0.98914 0.86381 1.73629 1.16602 0.92734 1.23609 1.84562 1.62195 1.26597 1.23151 1.26555 0.98773 1.00610 0.83677 1.22397 1.10922 0.95475 0.95898 1.16888 0.82472 0.79999 0.83049 1.90771 1.33052 1.38609 1.78959 1.48081 1.23237 1.52946 1.08252 1.22065 0.85732 0.95720 0.98900 1.21916 0.96144 0.99912 0.98915 1.22250 0.96859 1.05534 0.92758 1.21741 0.95212 0.97674 0.97140 0.93158 1.21220 0.95724 0.88068 0.90531 0.94573 1.22696 0.98233 0.98175 0.98053 1.22754 0.99642 0.97680 0.97358 1.21765 0.89209 0.93406 0.95307 1.44698 1.21515 1.10796 1.55893 1.18369 0.86272 0.86569 1.46291 0.89996 1.25450 0.96328 0.96413 0.97125 1.69757 1.03099 1.31862 1.49551 0.87036 0.77075 0.85123 0.79210 1.20553 1.23406 1.19904 1.21785 0.98416 1.02110 0.76945 0.92818 0.91649 0.91266 0.90047 0.89179 0.75513 0.90324 0.90627 0.90993 0.93181 0.92617 0.84943 0.90944 0.92130 0.91877 0.91892 0.93400 0.95624 0.92512 0.89470 0.89807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.89 37.15 0.37 -1.14 16 2 C -0.04 -0.48 6.55 -27.89 -0.18 -0.67 16 3 C 0.07 0.87 6.84 -79.77 -0.55 0.32 16 4 N -0.36 -4.67 12.01 34.78 0.42 -4.26 16 5 O 0.10 1.09 11.06 18.65 0.21 1.29 16 6 C -0.01 -0.15 9.97 30.41 0.30 0.16 16 7 C -0.24 -3.16 5.66 -102.89 -0.58 -3.74 16 8 C 0.59 9.21 7.67 -12.53 -0.10 9.12 16 9 O -0.54 -9.74 16.52 5.27 0.09 -9.65 16 10 N -0.59 -9.16 2.97 -174.05 -0.52 -9.68 16 11 C 0.10 1.33 5.61 -3.71 -0.02 1.31 16 12 C -0.13 -2.05 6.08 -26.61 -0.16 -2.21 16 13 C -0.14 -2.68 3.52 -26.69 -0.09 -2.78 16 14 C -0.10 -1.79 2.22 -90.50 -0.20 -1.99 16 15 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 16 C 0.15 3.00 2.15 -66.95 -0.14 2.86 16 17 H 0.04 0.81 3.46 -51.93 -0.18 0.63 16 18 C -0.13 -2.23 6.29 -24.90 -0.16 -2.39 16 19 C -0.14 -2.19 7.08 -24.58 -0.17 -2.37 16 20 C 0.13 2.38 7.22 -2.51 -0.02 2.37 16 21 N -0.60 -12.98 1.71 -162.55 -0.28 -13.26 16 22 C -0.25 -6.14 8.13 -15.06 -0.12 -6.26 16 23 H 0.08 2.22 8.06 -52.49 -0.42 1.80 16 24 C 0.05 1.25 3.59 -17.43 -0.06 1.19 16 25 N -0.90 -24.68 13.97 55.49 0.78 -23.91 16 26 Si 0.88 21.31 23.02 -169.99 -3.91 17.40 16 27 H -0.28 -6.49 5.85 56.52 0.33 -6.16 16 28 H -0.31 -7.62 7.11 56.52 0.40 -7.22 16 29 H -0.27 -6.66 7.07 56.52 0.40 -6.26 16 30 C 0.13 2.21 5.25 -3.71 -0.02 2.20 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.09 1.07 8.14 -51.92 -0.42 0.65 16 36 H 0.23 1.52 7.15 -52.49 -0.38 1.14 16 37 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.08 0.83 4.46 -51.93 -0.23 0.60 16 39 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.06 1.21 5.27 -51.93 -0.27 0.94 16 42 H 0.13 2.99 4.61 -51.93 -0.24 2.75 16 43 H 0.07 1.15 5.85 -51.93 -0.30 0.85 16 44 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 46 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 48 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 50 H 0.09 1.65 7.39 -51.93 -0.38 1.26 16 51 H 0.08 1.48 5.17 -51.93 -0.27 1.21 16 LS Contribution 378.73 15.07 5.71 5.71 Total: -1.00 -29.02 378.73 -7.23 -36.25 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -7.81 Total: 4.14 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: -1.91 Total: -4.05 kcal Atomic # 7 Polarization: -51.50 SS G_CDS: 0.40 Total: -51.10 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: 0.29 Total: -8.36 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -3.91 Total: 17.40 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -29.02 -7.23 -36.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963357343.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.659 kcal (2) G-P(sol) polarization free energy of solvation -29.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds