Wall clock time and date at job start Wed Apr 1 2020 05:51:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52993 * 1
3 3 C 1.50702 * 109.46956 * 2 1
4 4 N 1.30010 * 127.33272 * 270.03886 * 3 2 1
5 5 O 1.20661 * 112.30113 * 179.97438 * 4 3 2
6 6 C 1.33493 * 113.15521 * 359.71932 * 5 4 3
7 7 C 1.37363 * 106.34120 * 0.44871 * 6 5 4
8 8 C 1.47394 * 128.56326 * 179.85199 * 7 6 5
9 9 O 1.21612 * 119.99888 * 141.93114 * 8 7 6
10 10 N 1.34775 * 120.00726 * 321.93362 * 8 7 6
11 11 C 1.46929 * 120.62602 * 357.18348 * 10 8 7
12 12 C 1.53189 * 108.77579 * 233.63100 * 11 10 8
13 13 C 1.53036 * 109.31434 * 305.36691 * 12 11 10
14 14 C 1.53045 * 109.53752 * 61.36506 * 13 12 11
15 15 H 1.08995 * 109.49279 * 58.58790 * 14 13 12
16 16 C 1.53000 * 109.49578 * 178.68261 * 14 13 12
17 17 H 1.08998 * 109.87431 * 301.12808 * 16 14 13
18 18 C 1.54323 * 109.88086 * 179.97438 * 16 14 13
19 19 C 1.55157 * 102.94153 * 218.39117 * 18 16 14
20 20 C 1.54909 * 101.58379 * 35.50220 * 19 18 16
21 21 N 1.47022 * 109.88082 * 62.14863 * 16 14 13
22 22 C 1.36934 * 125.65010 * 298.31677 * 21 16 14
23 23 H 1.07999 * 120.00329 * 139.75178 * 22 21 16
24 24 C 1.38815 * 120.00140 * 319.75891 * 22 21 16
25 25 N 1.31617 * 120.00222 * 167.48138 * 24 22 21
26 26 Si 1.86806 * 119.99781 * 347.48190 * 24 22 21
27 27 H 1.48500 * 109.47174 * 86.71546 * 26 24 22
28 28 H 1.48497 * 109.46915 * 206.71579 * 26 24 22
29 29 H 1.48499 * 109.47116 * 326.71355 * 26 24 22
30 30 C 1.46918 * 120.63427 * 177.20783 * 10 8 7
31 31 H 1.09005 * 109.47340 * 60.00512 * 1 2 3
32 32 H 1.09004 * 109.47511 * 180.02562 * 1 2 3
33 33 H 1.09003 * 109.47678 * 299.99909 * 1 2 3
34 34 H 1.08997 * 109.47045 * 239.99820 * 2 1 3
35 35 H 1.09008 * 109.47004 * 119.99880 * 2 1 3
36 36 H 1.08002 * 126.83148 * 180.31044 * 6 5 4
37 37 H 1.09005 * 109.58129 * 113.84117 * 11 10 8
38 38 H 1.08999 * 109.58575 * 353.42561 * 11 10 8
39 39 H 1.09006 * 109.49541 * 185.41329 * 12 11 10
40 40 H 1.09000 * 109.49762 * 65.31874 * 12 11 10
41 41 H 1.09001 * 109.45737 * 181.38865 * 13 12 11
42 42 H 1.09005 * 109.46035 * 301.34541 * 13 12 11
43 43 H 1.09002 * 110.72064 * 336.75559 * 18 16 14
44 44 H 1.08998 * 110.72355 * 100.02716 * 18 16 14
45 45 H 1.08994 * 111.00452 * 277.42723 * 19 18 16
46 46 H 1.09002 * 111.00552 * 153.57734 * 19 18 16
47 47 H 1.08994 * 110.36955 * 204.15575 * 20 19 18
48 48 H 1.08995 * 110.46040 * 81.87650 * 20 19 18
49 49 H 0.97006 * 120.00148 * 179.97438 * 25 24 22
50 50 H 1.08992 * 109.59083 * 246.15407 * 30 10 8
51 51 H 1.08998 * 109.58868 * 6.44202 * 30 10 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0322 1.4208 0.0000
4 7 2.2944 2.1644 -1.0337
5 8 2.6825 3.2632 -0.7208
6 6 2.7401 3.4429 0.6007
7 6 2.3298 2.2619 1.1696
8 6 2.2109 1.9231 2.5992
9 8 1.2848 1.2365 2.9864
10 7 3.1284 2.3743 3.4773
11 6 4.2860 3.1530 3.0166
12 6 5.5648 2.4926 3.5411
13 6 5.4714 2.3451 5.0615
14 6 4.2836 1.4477 5.4167
15 1 4.4098 0.4735 4.9444
16 6 4.2107 1.2743 6.9351
17 1 5.1376 0.8341 7.3027
18 6 3.0150 0.3708 7.3033
19 6 2.4646 1.0320 8.5945
20 6 2.7032 2.5342 8.3009
21 7 3.9872 2.5780 7.5770
22 6 4.8318 3.6540 7.5137
23 1 4.4300 4.6500 7.4005
24 6 6.2046 3.4646 7.5950
25 7 7.0239 4.4487 7.2909
26 14 6.8891 1.8128 8.1361
27 1 7.0156 0.9191 6.9569
28 1 8.2250 2.0091 8.7541
29 1 5.9707 1.1971 9.1275
30 6 2.9903 2.0964 4.9133
31 1 -0.3634 0.5138 -0.8901
32 1 -0.3634 -1.0277 0.0005
33 1 -0.3634 0.5138 0.8900
34 1 1.8932 -0.5138 -0.8899
35 1 1.8933 -0.5139 0.8901
36 1 3.0502 4.3380 1.1195
37 1 4.2171 4.1713 3.3993
38 1 4.3042 3.1706 1.9269
39 1 6.4248 3.1127 3.2878
40 1 5.6789 1.5085 3.0865
41 1 6.3905 1.8979 5.4401
42 1 5.3325 3.3272 5.5137
43 1 2.2642 0.3838 6.5132
44 1 3.3483 -0.6475 7.5034
45 1 3.0296 0.7104 9.4694
46 1 1.4022 0.8221 8.7187
47 1 2.7736 3.0963 9.2320
48 1 1.9026 2.9324 7.6777
49 1 7.9832 4.3164 7.3481
50 1 2.8158 3.0284 5.4508
51 1 2.1521 1.4187 5.0755
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000963357343.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:51:54
Heat of formation + Delta-G solvation = 41.133290 kcal
Electronic energy + Delta-G solvation = -33031.802788 eV
Core-core repulsion = 28934.739682 eV
Total energy + Delta-G solvation = -4097.063107 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.93 seconds
Orbital eigenvalues (eV)
-45.99108 -41.44810 -39.92256 -37.77280 -36.26617 -34.85811 -34.34171 -32.98758
-32.28837 -32.24176 -31.72901 -28.72170 -27.17316 -26.32279 -25.53718 -24.61585
-24.16617 -22.13142 -21.93119 -21.60019 -21.23660 -20.37679 -18.84994 -18.62880
-18.37673 -17.87817 -17.68716 -17.10863 -16.35879 -16.19642 -15.69837 -15.39336
-15.34441 -15.25693 -15.04124 -14.91099 -14.68260 -14.36330 -14.19940 -13.94547
-13.67359 -13.56182 -13.50168 -13.17223 -12.96668 -12.86808 -12.68473 -12.54134
-12.45767 -12.19076 -12.12450 -11.91642 -11.89632 -11.78646 -11.70097 -11.46613
-11.29507 -11.10628 -10.98996 -10.85002 -10.61263 -10.32629 -9.66004 -8.58861
-8.13101 -5.51725 0.11067 0.71734 1.29752 1.40244 1.47339 1.61954
1.92572 2.22945 2.43654 2.94320 3.15399 3.26345 3.41057 3.54145
3.79499 3.86773 3.90135 4.05056 4.09772 4.13099 4.17823 4.20061
4.25637 4.28839 4.34785 4.43236 4.45852 4.53976 4.62351 4.67942
4.74146 4.81795 4.85218 4.89525 4.92528 5.01760 5.03416 5.07952
5.09418 5.16715 5.18779 5.26037 5.27020 5.27780 5.41657 5.50216
5.53531 5.88265 6.07584 6.26018 6.34566 6.92465 6.99892 7.16106
7.61456 8.31782 9.05251
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.015401 B = 0.003663 C = 0.003240
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1817.579453 B = 7643.145044 C = 8639.019624
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C -0.045 4.045
3 C 0.059 3.941
4 N -0.373 5.373
5 O 0.100 5.900
6 C 0.017 3.983
7 C -0.270 4.270
8 C 0.594 3.406
9 O -0.565 6.565
10 N -0.595 5.595
11 C 0.102 3.898
12 C -0.127 4.127
13 C -0.133 4.133
14 C -0.092 4.092
15 H 0.056 0.944
16 C 0.142 3.858
17 H 0.014 0.986
18 C -0.127 4.127
19 C -0.125 4.125
20 C 0.122 3.878
21 N -0.614 5.614
22 C -0.224 4.224
23 H 0.052 0.948
24 C 0.017 3.983
25 N -0.938 5.938
26 Si 0.925 3.075
27 H -0.270 1.270
28 H -0.319 1.319
29 H -0.276 1.276
30 C 0.143 3.857
31 H 0.056 0.944
32 H 0.083 0.917
33 H 0.046 0.954
34 H 0.097 0.903
35 H 0.081 0.919
36 H 0.266 0.734
37 H 0.083 0.917
38 H 0.108 0.892
39 H 0.080 0.920
40 H 0.056 0.944
41 H 0.028 0.972
42 H 0.101 0.899
43 H 0.083 0.917
44 H 0.077 0.923
45 H 0.059 0.941
46 H 0.097 0.903
47 H 0.040 0.960
48 H 0.036 0.964
49 H 0.261 0.739
50 H 0.068 0.932
51 H 0.083 0.917
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.043 -5.784 -12.637 16.581
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.196 4.196
2 C -0.083 4.083
3 C -0.103 4.103
4 N -0.080 5.080
5 O 0.041 5.959
6 C -0.064 4.064
7 C -0.277 4.277
8 C 0.382 3.618
9 O -0.446 6.446
10 N -0.326 5.326
11 C -0.020 4.020
12 C -0.165 4.165
13 C -0.170 4.170
14 C -0.113 4.113
15 H 0.074 0.926
16 C 0.036 3.964
17 H 0.032 0.968
18 C -0.165 4.165
19 C -0.163 4.163
20 C -0.002 4.002
21 N -0.341 5.341
22 C -0.353 4.353
23 H 0.070 0.930
24 C -0.181 4.181
25 N -0.582 5.582
26 Si 0.757 3.243
27 H -0.197 1.197
28 H -0.249 1.249
29 H -0.202 1.202
30 C 0.021 3.979
31 H 0.075 0.925
32 H 0.102 0.898
33 H 0.065 0.935
34 H 0.115 0.885
35 H 0.100 0.900
36 H 0.281 0.719
37 H 0.101 0.899
38 H 0.126 0.874
39 H 0.098 0.902
40 H 0.075 0.925
41 H 0.046 0.954
42 H 0.119 0.881
43 H 0.101 0.899
44 H 0.096 0.904
45 H 0.077 0.923
46 H 0.115 0.885
47 H 0.059 0.941
48 H 0.054 0.946
49 H 0.071 0.929
50 H 0.086 0.914
51 H 0.101 0.899
Dipole moment (debyes) X Y Z Total
from point charges -9.369 -6.155 -13.757 17.746
hybrid contribution 1.195 -0.591 1.605 2.086
sum -8.174 -6.746 -12.152 16.124
Atomic orbital electron populations
1.21636 0.92919 1.03339 1.01664 1.20029 0.97385 0.86792 1.04114
1.25097 0.99297 0.99589 0.86330 1.73639 1.17341 0.93204 1.23795
1.84560 1.61694 1.26051 1.23577 1.27155 0.95773 1.00505 0.83007
1.22200 1.13813 0.97104 0.94620 1.17103 0.81695 0.79142 0.83848
1.90751 1.34185 1.39957 1.79663 1.48074 1.23849 1.53221 1.07483
1.22161 0.83836 0.95261 1.00713 1.21865 0.97801 1.00823 0.96027
1.22034 0.95969 1.03521 0.95451 1.21664 0.95467 0.97768 0.96405
0.92605 1.21325 0.96275 0.87536 0.91228 0.96843 1.22691 0.96974
0.98265 0.98575 1.22713 1.01705 0.95093 0.96810 1.21900 0.87877
0.95612 0.94831 1.44772 1.21897 1.10532 1.56857 1.18122 0.86545
0.86506 1.44108 0.93049 1.25688 0.96548 0.97853 0.97998 1.69841
1.03002 1.33310 1.52033 0.86380 0.75687 0.83314 0.78883 1.19722
1.24905 1.20171 1.21441 0.97427 1.00867 0.78138 0.92479 0.89842
0.93475 0.88462 0.90044 0.71888 0.89866 0.87399 0.90159 0.92505
0.95362 0.88070 0.89859 0.90417 0.92263 0.88504 0.94147 0.94619
0.92949 0.91353 0.89917
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.70 9.89 71.98 0.71 -1.99 16
2 C -0.05 -0.95 6.55 29.85 0.20 -0.75 16
3 C 0.06 1.43 6.84 45.16 0.31 1.74 16
4 N -0.37 -8.82 12.01 -44.78 -0.54 -9.36 16
5 O 0.10 1.99 11.06 76.98 0.85 2.84 16
6 C 0.02 0.29 9.97 67.61 0.67 0.97 16
7 C -0.27 -6.49 5.66 -18.75 -0.11 -6.59 16
8 C 0.59 17.53 7.67 86.65 0.66 18.19 16
9 O -0.57 -19.96 16.52 -4.07 -0.07 -20.02 16
10 N -0.60 -17.34 2.97 -822.84 -2.45 -19.79 16
11 C 0.10 2.52 5.61 86.36 0.48 3.01 16
12 C -0.13 -3.80 6.08 30.67 0.19 -3.61 16
13 C -0.13 -5.18 3.52 30.62 0.11 -5.08 16
14 C -0.09 -3.34 2.22 -10.71 -0.02 -3.37 16
15 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16
16 C 0.14 5.54 2.15 45.34 0.10 5.64 16
17 H 0.01 0.62 3.46 -2.39 -0.01 0.61 16
18 C -0.13 -3.94 6.29 31.78 0.20 -3.74 16
19 C -0.13 -3.71 7.08 31.99 0.23 -3.48 16
20 C 0.12 4.41 7.22 86.85 0.63 5.04 16
21 N -0.61 -26.42 1.71 -668.18 -1.14 -27.56 16
22 C -0.22 -11.38 8.13 84.03 0.68 -10.70 16
23 H 0.05 2.91 8.06 -2.91 -0.02 2.89 16
24 C 0.02 0.91 3.59 84.86 0.30 1.21 16
25 N -0.94 -53.01 13.97 21.65 0.30 -52.71 16
26 Si 0.92 44.86 23.02 68.60 1.58 46.44 16
27 H -0.27 -12.59 5.85 99.48 0.58 -12.01 16
28 H -0.32 -16.06 7.11 99.48 0.71 -15.36 16
29 H -0.28 -13.30 7.07 99.48 0.70 -12.60 16
30 C 0.14 4.79 5.25 86.37 0.45 5.25 16
31 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16
32 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16
33 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16
34 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16
35 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16
36 H 0.27 2.28 7.15 -2.91 -0.02 2.26 16
37 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16
38 H 0.11 1.96 4.46 -2.39 -0.01 1.95 16
39 H 0.08 2.27 8.14 -2.38 -0.02 2.25 16
40 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16
41 H 0.03 1.23 5.27 -2.39 -0.01 1.22 16
42 H 0.10 4.65 4.61 -2.38 -0.01 4.64 16
43 H 0.08 2.42 5.85 -2.39 -0.01 2.41 16
44 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16
45 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16
46 H 0.10 2.26 8.14 -2.39 -0.02 2.25 16
47 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16
48 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16
49 H 0.26 14.37 8.31 -92.70 -0.77 13.60 16
50 H 0.07 2.56 7.39 -2.39 -0.02 2.54 16
51 H 0.08 2.80 5.17 -2.39 -0.01 2.79 16
Total: -1.00 -65.02 378.73 5.16 -59.86
By element:
Atomic # 1 Polarization: 17.76 SS G_CDS: 0.82 Total: 18.58 kcal
Atomic # 6 Polarization: -4.07 SS G_CDS: 5.80 Total: 1.72 kcal
Atomic # 7 Polarization: -105.59 SS G_CDS: -3.82 Total: -109.41 kcal
Atomic # 8 Polarization: -17.97 SS G_CDS: 0.78 Total: -17.19 kcal
Atomic # 14 Polarization: 44.86 SS G_CDS: 1.58 Total: 46.44 kcal
Total: -65.02 5.16 -59.86 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000963357343.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 100.996 kcal
(2) G-P(sol) polarization free energy of solvation -65.019 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.977 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.156 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.863 kcal
(6) G-S(sol) free energy of system = (1) + (5) 41.133 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.94 seconds