Wall clock time and date at job start Wed Apr 1 2020 05:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50702 * 109.46956 * 2 1 4 4 N 1.30010 * 127.33272 * 270.03886 * 3 2 1 5 5 O 1.20661 * 112.30113 * 179.97438 * 4 3 2 6 6 C 1.33493 * 113.15521 * 359.71932 * 5 4 3 7 7 C 1.37363 * 106.34120 * 0.44871 * 6 5 4 8 8 C 1.47394 * 128.56326 * 179.85199 * 7 6 5 9 9 O 1.21612 * 119.99888 * 141.93114 * 8 7 6 10 10 N 1.34775 * 120.00726 * 321.93362 * 8 7 6 11 11 C 1.46929 * 120.62602 * 357.18348 * 10 8 7 12 12 C 1.53189 * 108.77579 * 233.63100 * 11 10 8 13 13 C 1.53036 * 109.31434 * 305.36691 * 12 11 10 14 14 C 1.53045 * 109.53752 * 61.36506 * 13 12 11 15 15 H 1.08995 * 109.49279 * 58.58790 * 14 13 12 16 16 C 1.53000 * 109.49578 * 178.68261 * 14 13 12 17 17 H 1.08998 * 109.87431 * 301.12808 * 16 14 13 18 18 C 1.54323 * 109.88086 * 179.97438 * 16 14 13 19 19 C 1.55157 * 102.94153 * 218.39117 * 18 16 14 20 20 C 1.54909 * 101.58379 * 35.50220 * 19 18 16 21 21 N 1.47022 * 109.88082 * 62.14863 * 16 14 13 22 22 C 1.36934 * 125.65010 * 298.31677 * 21 16 14 23 23 H 1.07999 * 120.00329 * 139.75178 * 22 21 16 24 24 C 1.38815 * 120.00140 * 319.75891 * 22 21 16 25 25 N 1.31617 * 120.00222 * 167.48138 * 24 22 21 26 26 Si 1.86806 * 119.99781 * 347.48190 * 24 22 21 27 27 H 1.48500 * 109.47174 * 86.71546 * 26 24 22 28 28 H 1.48497 * 109.46915 * 206.71579 * 26 24 22 29 29 H 1.48499 * 109.47116 * 326.71355 * 26 24 22 30 30 C 1.46918 * 120.63427 * 177.20783 * 10 8 7 31 31 H 1.09005 * 109.47340 * 60.00512 * 1 2 3 32 32 H 1.09004 * 109.47511 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47678 * 299.99909 * 1 2 3 34 34 H 1.08997 * 109.47045 * 239.99820 * 2 1 3 35 35 H 1.09008 * 109.47004 * 119.99880 * 2 1 3 36 36 H 1.08002 * 126.83148 * 180.31044 * 6 5 4 37 37 H 1.09005 * 109.58129 * 113.84117 * 11 10 8 38 38 H 1.08999 * 109.58575 * 353.42561 * 11 10 8 39 39 H 1.09006 * 109.49541 * 185.41329 * 12 11 10 40 40 H 1.09000 * 109.49762 * 65.31874 * 12 11 10 41 41 H 1.09001 * 109.45737 * 181.38865 * 13 12 11 42 42 H 1.09005 * 109.46035 * 301.34541 * 13 12 11 43 43 H 1.09002 * 110.72064 * 336.75559 * 18 16 14 44 44 H 1.08998 * 110.72355 * 100.02716 * 18 16 14 45 45 H 1.08994 * 111.00452 * 277.42723 * 19 18 16 46 46 H 1.09002 * 111.00552 * 153.57734 * 19 18 16 47 47 H 1.08994 * 110.36955 * 204.15575 * 20 19 18 48 48 H 1.08995 * 110.46040 * 81.87650 * 20 19 18 49 49 H 0.97006 * 120.00148 * 179.97438 * 25 24 22 50 50 H 1.08992 * 109.59083 * 246.15407 * 30 10 8 51 51 H 1.08998 * 109.58868 * 6.44202 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 7 2.2944 2.1644 -1.0337 5 8 2.6825 3.2632 -0.7208 6 6 2.7401 3.4429 0.6007 7 6 2.3298 2.2619 1.1696 8 6 2.2109 1.9231 2.5992 9 8 1.2848 1.2365 2.9864 10 7 3.1284 2.3743 3.4773 11 6 4.2860 3.1530 3.0166 12 6 5.5648 2.4926 3.5411 13 6 5.4714 2.3451 5.0615 14 6 4.2836 1.4477 5.4167 15 1 4.4098 0.4735 4.9444 16 6 4.2107 1.2743 6.9351 17 1 5.1376 0.8341 7.3027 18 6 3.0150 0.3708 7.3033 19 6 2.4646 1.0320 8.5945 20 6 2.7032 2.5342 8.3009 21 7 3.9872 2.5780 7.5770 22 6 4.8318 3.6540 7.5137 23 1 4.4300 4.6500 7.4005 24 6 6.2046 3.4646 7.5950 25 7 7.0239 4.4487 7.2909 26 14 6.8891 1.8128 8.1361 27 1 7.0156 0.9191 6.9569 28 1 8.2250 2.0091 8.7541 29 1 5.9707 1.1971 9.1275 30 6 2.9903 2.0964 4.9133 31 1 -0.3634 0.5138 -0.8901 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8932 -0.5138 -0.8899 35 1 1.8933 -0.5139 0.8901 36 1 3.0502 4.3380 1.1195 37 1 4.2171 4.1713 3.3993 38 1 4.3042 3.1706 1.9269 39 1 6.4248 3.1127 3.2878 40 1 5.6789 1.5085 3.0865 41 1 6.3905 1.8979 5.4401 42 1 5.3325 3.3272 5.5137 43 1 2.2642 0.3838 6.5132 44 1 3.3483 -0.6475 7.5034 45 1 3.0296 0.7104 9.4694 46 1 1.4022 0.8221 8.7187 47 1 2.7736 3.0963 9.2320 48 1 1.9026 2.9324 7.6777 49 1 7.9832 4.3164 7.3481 50 1 2.8158 3.0284 5.4508 51 1 2.1521 1.4187 5.0755 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963357343.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:51:54 Heat of formation + Delta-G solvation = 41.133290 kcal Electronic energy + Delta-G solvation = -33031.802788 eV Core-core repulsion = 28934.739682 eV Total energy + Delta-G solvation = -4097.063107 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -45.99108 -41.44810 -39.92256 -37.77280 -36.26617 -34.85811 -34.34171 -32.98758 -32.28837 -32.24176 -31.72901 -28.72170 -27.17316 -26.32279 -25.53718 -24.61585 -24.16617 -22.13142 -21.93119 -21.60019 -21.23660 -20.37679 -18.84994 -18.62880 -18.37673 -17.87817 -17.68716 -17.10863 -16.35879 -16.19642 -15.69837 -15.39336 -15.34441 -15.25693 -15.04124 -14.91099 -14.68260 -14.36330 -14.19940 -13.94547 -13.67359 -13.56182 -13.50168 -13.17223 -12.96668 -12.86808 -12.68473 -12.54134 -12.45767 -12.19076 -12.12450 -11.91642 -11.89632 -11.78646 -11.70097 -11.46613 -11.29507 -11.10628 -10.98996 -10.85002 -10.61263 -10.32629 -9.66004 -8.58861 -8.13101 -5.51725 0.11067 0.71734 1.29752 1.40244 1.47339 1.61954 1.92572 2.22945 2.43654 2.94320 3.15399 3.26345 3.41057 3.54145 3.79499 3.86773 3.90135 4.05056 4.09772 4.13099 4.17823 4.20061 4.25637 4.28839 4.34785 4.43236 4.45852 4.53976 4.62351 4.67942 4.74146 4.81795 4.85218 4.89525 4.92528 5.01760 5.03416 5.07952 5.09418 5.16715 5.18779 5.26037 5.27020 5.27780 5.41657 5.50216 5.53531 5.88265 6.07584 6.26018 6.34566 6.92465 6.99892 7.16106 7.61456 8.31782 9.05251 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015401 B = 0.003663 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.579453 B = 7643.145044 C = 8639.019624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.045 4.045 3 C 0.059 3.941 4 N -0.373 5.373 5 O 0.100 5.900 6 C 0.017 3.983 7 C -0.270 4.270 8 C 0.594 3.406 9 O -0.565 6.565 10 N -0.595 5.595 11 C 0.102 3.898 12 C -0.127 4.127 13 C -0.133 4.133 14 C -0.092 4.092 15 H 0.056 0.944 16 C 0.142 3.858 17 H 0.014 0.986 18 C -0.127 4.127 19 C -0.125 4.125 20 C 0.122 3.878 21 N -0.614 5.614 22 C -0.224 4.224 23 H 0.052 0.948 24 C 0.017 3.983 25 N -0.938 5.938 26 Si 0.925 3.075 27 H -0.270 1.270 28 H -0.319 1.319 29 H -0.276 1.276 30 C 0.143 3.857 31 H 0.056 0.944 32 H 0.083 0.917 33 H 0.046 0.954 34 H 0.097 0.903 35 H 0.081 0.919 36 H 0.266 0.734 37 H 0.083 0.917 38 H 0.108 0.892 39 H 0.080 0.920 40 H 0.056 0.944 41 H 0.028 0.972 42 H 0.101 0.899 43 H 0.083 0.917 44 H 0.077 0.923 45 H 0.059 0.941 46 H 0.097 0.903 47 H 0.040 0.960 48 H 0.036 0.964 49 H 0.261 0.739 50 H 0.068 0.932 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.043 -5.784 -12.637 16.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.083 4.083 3 C -0.103 4.103 4 N -0.080 5.080 5 O 0.041 5.959 6 C -0.064 4.064 7 C -0.277 4.277 8 C 0.382 3.618 9 O -0.446 6.446 10 N -0.326 5.326 11 C -0.020 4.020 12 C -0.165 4.165 13 C -0.170 4.170 14 C -0.113 4.113 15 H 0.074 0.926 16 C 0.036 3.964 17 H 0.032 0.968 18 C -0.165 4.165 19 C -0.163 4.163 20 C -0.002 4.002 21 N -0.341 5.341 22 C -0.353 4.353 23 H 0.070 0.930 24 C -0.181 4.181 25 N -0.582 5.582 26 Si 0.757 3.243 27 H -0.197 1.197 28 H -0.249 1.249 29 H -0.202 1.202 30 C 0.021 3.979 31 H 0.075 0.925 32 H 0.102 0.898 33 H 0.065 0.935 34 H 0.115 0.885 35 H 0.100 0.900 36 H 0.281 0.719 37 H 0.101 0.899 38 H 0.126 0.874 39 H 0.098 0.902 40 H 0.075 0.925 41 H 0.046 0.954 42 H 0.119 0.881 43 H 0.101 0.899 44 H 0.096 0.904 45 H 0.077 0.923 46 H 0.115 0.885 47 H 0.059 0.941 48 H 0.054 0.946 49 H 0.071 0.929 50 H 0.086 0.914 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -9.369 -6.155 -13.757 17.746 hybrid contribution 1.195 -0.591 1.605 2.086 sum -8.174 -6.746 -12.152 16.124 Atomic orbital electron populations 1.21636 0.92919 1.03339 1.01664 1.20029 0.97385 0.86792 1.04114 1.25097 0.99297 0.99589 0.86330 1.73639 1.17341 0.93204 1.23795 1.84560 1.61694 1.26051 1.23577 1.27155 0.95773 1.00505 0.83007 1.22200 1.13813 0.97104 0.94620 1.17103 0.81695 0.79142 0.83848 1.90751 1.34185 1.39957 1.79663 1.48074 1.23849 1.53221 1.07483 1.22161 0.83836 0.95261 1.00713 1.21865 0.97801 1.00823 0.96027 1.22034 0.95969 1.03521 0.95451 1.21664 0.95467 0.97768 0.96405 0.92605 1.21325 0.96275 0.87536 0.91228 0.96843 1.22691 0.96974 0.98265 0.98575 1.22713 1.01705 0.95093 0.96810 1.21900 0.87877 0.95612 0.94831 1.44772 1.21897 1.10532 1.56857 1.18122 0.86545 0.86506 1.44108 0.93049 1.25688 0.96548 0.97853 0.97998 1.69841 1.03002 1.33310 1.52033 0.86380 0.75687 0.83314 0.78883 1.19722 1.24905 1.20171 1.21441 0.97427 1.00867 0.78138 0.92479 0.89842 0.93475 0.88462 0.90044 0.71888 0.89866 0.87399 0.90159 0.92505 0.95362 0.88070 0.89859 0.90417 0.92263 0.88504 0.94147 0.94619 0.92949 0.91353 0.89917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 9.89 71.98 0.71 -1.99 16 2 C -0.05 -0.95 6.55 29.85 0.20 -0.75 16 3 C 0.06 1.43 6.84 45.16 0.31 1.74 16 4 N -0.37 -8.82 12.01 -44.78 -0.54 -9.36 16 5 O 0.10 1.99 11.06 76.98 0.85 2.84 16 6 C 0.02 0.29 9.97 67.61 0.67 0.97 16 7 C -0.27 -6.49 5.66 -18.75 -0.11 -6.59 16 8 C 0.59 17.53 7.67 86.65 0.66 18.19 16 9 O -0.57 -19.96 16.52 -4.07 -0.07 -20.02 16 10 N -0.60 -17.34 2.97 -822.84 -2.45 -19.79 16 11 C 0.10 2.52 5.61 86.36 0.48 3.01 16 12 C -0.13 -3.80 6.08 30.67 0.19 -3.61 16 13 C -0.13 -5.18 3.52 30.62 0.11 -5.08 16 14 C -0.09 -3.34 2.22 -10.71 -0.02 -3.37 16 15 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 16 C 0.14 5.54 2.15 45.34 0.10 5.64 16 17 H 0.01 0.62 3.46 -2.39 -0.01 0.61 16 18 C -0.13 -3.94 6.29 31.78 0.20 -3.74 16 19 C -0.13 -3.71 7.08 31.99 0.23 -3.48 16 20 C 0.12 4.41 7.22 86.85 0.63 5.04 16 21 N -0.61 -26.42 1.71 -668.18 -1.14 -27.56 16 22 C -0.22 -11.38 8.13 84.03 0.68 -10.70 16 23 H 0.05 2.91 8.06 -2.91 -0.02 2.89 16 24 C 0.02 0.91 3.59 84.86 0.30 1.21 16 25 N -0.94 -53.01 13.97 21.65 0.30 -52.71 16 26 Si 0.92 44.86 23.02 68.60 1.58 46.44 16 27 H -0.27 -12.59 5.85 99.48 0.58 -12.01 16 28 H -0.32 -16.06 7.11 99.48 0.71 -15.36 16 29 H -0.28 -13.30 7.07 99.48 0.70 -12.60 16 30 C 0.14 4.79 5.25 86.37 0.45 5.25 16 31 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 32 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 33 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 36 H 0.27 2.28 7.15 -2.91 -0.02 2.26 16 37 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 38 H 0.11 1.96 4.46 -2.39 -0.01 1.95 16 39 H 0.08 2.27 8.14 -2.38 -0.02 2.25 16 40 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.03 1.23 5.27 -2.39 -0.01 1.22 16 42 H 0.10 4.65 4.61 -2.38 -0.01 4.64 16 43 H 0.08 2.42 5.85 -2.39 -0.01 2.41 16 44 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 45 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 46 H 0.10 2.26 8.14 -2.39 -0.02 2.25 16 47 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 48 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 49 H 0.26 14.37 8.31 -92.70 -0.77 13.60 16 50 H 0.07 2.56 7.39 -2.39 -0.02 2.54 16 51 H 0.08 2.80 5.17 -2.39 -0.01 2.79 16 Total: -1.00 -65.02 378.73 5.16 -59.86 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: 0.82 Total: 18.58 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: 5.80 Total: 1.72 kcal Atomic # 7 Polarization: -105.59 SS G_CDS: -3.82 Total: -109.41 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: 0.78 Total: -17.19 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 1.58 Total: 46.44 kcal Total: -65.02 5.16 -59.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963357343.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.996 kcal (2) G-P(sol) polarization free energy of solvation -65.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds