Wall clock time and date at job start Wed Apr 1 2020 05:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 109.47550 * 2 1 4 4 N 1.30014 * 127.33598 * 270.17556 * 3 2 1 5 5 O 1.20657 * 112.30158 * 180.31586 * 4 3 2 6 6 C 1.33494 * 113.15418 * 359.68624 * 5 4 3 7 7 C 1.37362 * 106.34458 * 0.02562 * 6 5 4 8 8 C 1.47392 * 128.56461 * 180.02562 * 7 6 5 9 9 O 1.21611 * 119.99800 * 212.84479 * 8 7 6 10 10 N 1.34773 * 120.00211 * 33.11858 * 8 7 6 11 11 C 1.46928 * 120.63051 * 6.11797 * 10 8 7 12 12 C 1.53622 * 108.54346 * 126.37012 * 11 10 8 13 13 C 1.53043 * 109.23792 * 54.85753 * 12 11 10 14 14 C 1.53042 * 109.54016 * 298.50803 * 13 12 11 15 15 H 1.08998 * 109.52491 * 301.40455 * 14 13 12 16 16 C 1.52996 * 109.49758 * 181.31613 * 14 13 12 17 17 H 1.09005 * 109.87312 * 49.21219 * 16 14 13 18 18 C 1.54323 * 109.88206 * 170.22636 * 16 14 13 19 19 C 1.55159 * 102.94522 * 141.61494 * 18 16 14 20 20 C 1.54911 * 101.57704 * 324.49723 * 19 18 16 21 21 N 1.47024 * 109.88612 * 288.19730 * 16 14 13 22 22 C 1.36935 * 125.64744 * 61.60461 * 21 16 14 23 23 H 1.07994 * 119.99921 * 317.30837 * 22 21 16 24 24 C 1.38816 * 119.99385 * 137.31020 * 22 21 16 25 25 N 1.31621 * 119.99550 * 172.04809 * 24 22 21 26 26 Si 1.86798 * 120.00396 * 352.05038 * 24 22 21 27 27 H 1.48500 * 109.47167 * 88.48654 * 26 24 22 28 28 H 1.48505 * 109.46774 * 208.48828 * 26 24 22 29 29 H 1.48504 * 109.46768 * 328.48390 * 26 24 22 30 30 C 1.46928 * 120.63295 * 186.40181 * 10 8 7 31 31 H 1.08997 * 109.46779 * 300.00131 * 1 2 3 32 32 H 1.09003 * 109.47153 * 59.99766 * 1 2 3 33 33 H 1.08991 * 109.47200 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.47110 * 240.00268 * 2 1 3 35 35 H 1.09003 * 109.47153 * 120.00234 * 2 1 3 36 36 H 1.08000 * 126.82359 * 179.97438 * 6 5 4 37 37 H 1.08996 * 109.58790 * 246.20707 * 11 10 8 38 38 H 1.08997 * 109.58619 * 6.62636 * 11 10 8 39 39 H 1.09000 * 109.63634 * 294.86994 * 12 11 10 40 40 H 1.08992 * 109.43225 * 174.72294 * 12 11 10 41 41 H 1.09002 * 109.45553 * 178.49147 * 13 12 11 42 42 H 1.08997 * 109.46379 * 58.53312 * 13 12 11 43 43 H 1.09008 * 110.71885 * 259.97831 * 18 16 14 44 44 H 1.08998 * 110.71983 * 23.24592 * 18 16 14 45 45 H 1.09000 * 111.00517 * 82.56960 * 19 18 16 46 46 H 1.08994 * 111.00358 * 206.38971 * 19 18 16 47 47 H 1.09000 * 110.36769 * 155.84774 * 20 19 18 48 48 H 1.09004 * 110.37022 * 278.06157 * 20 19 18 49 49 H 0.96996 * 120.00048 * 180.02562 * 25 24 22 50 50 H 1.09005 * 109.58570 * 353.37257 * 30 10 8 51 51 H 1.09001 * 109.58400 * 113.79225 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2923 2.1652 -1.0337 5 8 2.6876 3.2615 -0.7208 6 6 2.7528 3.4384 0.6008 7 6 2.3303 2.2617 1.1697 8 6 2.2099 1.9234 2.5992 9 8 2.4073 0.7831 2.9729 10 7 1.8756 2.8766 3.4914 11 6 1.4982 4.2235 3.0418 12 6 0.1330 4.5772 3.6511 13 6 0.2032 4.4192 5.1717 14 6 0.5236 2.9640 5.5209 15 1 -0.2435 2.3119 5.1034 16 6 0.5612 2.8002 7.0416 17 1 -0.3306 3.2439 7.4842 18 6 0.6386 1.3027 7.4063 19 6 1.6033 1.2903 8.6215 20 6 2.5951 2.4183 8.2426 21 7 1.7642 3.4478 7.5848 22 6 2.0629 4.7811 7.4935 23 1 1.8998 5.3087 6.5654 24 6 2.5755 5.4542 8.5940 25 7 3.0087 6.6905 8.4659 26 14 2.6506 4.6057 10.2564 27 1 3.9351 3.8708 10.3795 28 1 2.5561 5.6217 11.3354 29 1 1.5201 3.6502 10.3758 30 6 1.8877 2.5905 4.9325 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 3.0748 4.3293 1.1194 37 1 2.2469 4.9427 3.3737 38 1 1.4298 4.2399 1.9541 39 1 -0.6306 3.9102 3.2509 40 1 -0.1182 5.6086 3.4037 41 1 -0.7558 4.6952 5.6101 42 1 0.9838 5.0682 5.5686 43 1 -0.3433 0.9234 7.6895 44 1 1.0523 0.7253 6.5795 45 1 1.0734 1.5294 9.5435 46 1 2.1147 0.3314 8.7046 47 1 3.0649 2.8268 9.1373 48 1 3.3529 2.0422 7.5552 49 1 3.3673 7.1608 9.2348 50 1 2.0765 1.5289 5.0927 51 1 2.6677 3.1793 5.4154 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963357345.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:52:03 Heat of formation + Delta-G solvation = 57.331969 kcal Electronic energy + Delta-G solvation = -32671.863563 eV Core-core repulsion = 28575.502884 eV Total energy + Delta-G solvation = -4096.360679 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -45.07322 -40.14266 -38.43269 -36.54323 -35.37103 -33.35771 -32.68394 -31.97383 -31.40601 -31.02179 -29.97346 -27.33179 -26.04959 -24.72214 -24.40953 -23.54921 -22.87592 -21.18294 -21.02132 -20.30255 -19.61008 -18.77822 -17.89510 -17.62473 -16.98620 -16.63757 -16.31209 -15.72700 -15.05952 -14.80214 -14.54987 -14.41898 -14.26366 -13.84383 -13.68204 -13.46063 -13.22501 -13.03899 -12.88573 -12.77403 -12.53822 -12.34101 -12.16573 -11.84382 -11.77484 -11.46595 -11.38700 -11.21939 -11.18864 -11.08850 -10.82491 -10.69031 -10.50140 -10.31806 -10.11574 -10.06779 -9.93840 -9.76060 -9.60777 -9.56800 -9.33068 -8.56897 -8.38134 -6.70712 -6.02118 -3.58247 0.98347 1.65769 2.69614 2.99178 3.23218 3.28990 3.42443 3.47616 3.85724 4.13423 4.46709 4.56109 4.76749 4.86606 4.95109 4.99791 5.06623 5.11159 5.13989 5.16344 5.21917 5.30709 5.44263 5.46373 5.54486 5.61330 5.62503 5.66229 5.68611 5.75202 5.86985 5.89429 6.02016 6.04438 6.08790 6.13781 6.18034 6.25888 6.31589 6.41991 6.49907 6.52991 6.58709 6.70541 6.79263 6.86167 6.93994 7.02697 7.50730 7.97053 8.02533 8.19535 8.35190 8.80291 9.60165 10.23995 11.10162 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016616 B = 0.003271 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.761926 B = 8557.442492 C = 9318.252462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.050 4.050 3 C 0.068 3.932 4 N -0.360 5.360 5 O 0.095 5.905 6 C -0.014 4.014 7 C -0.241 4.241 8 C 0.591 3.409 9 O -0.535 6.535 10 N -0.596 5.596 11 C 0.095 3.905 12 C -0.130 4.130 13 C -0.133 4.133 14 C -0.099 4.099 15 H 0.056 0.944 16 C 0.164 3.836 17 H 0.046 0.954 18 C -0.129 4.129 19 C -0.137 4.137 20 C 0.114 3.886 21 N -0.602 5.602 22 C -0.254 4.254 23 H 0.097 0.903 24 C 0.037 3.963 25 N -0.908 5.908 26 Si 0.897 3.103 27 H -0.287 1.287 28 H -0.306 1.306 29 H -0.268 1.268 30 C 0.124 3.876 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.083 0.917 35 H 0.101 0.899 36 H 0.229 0.771 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.056 0.944 40 H 0.071 0.929 41 H 0.057 0.943 42 H 0.110 0.890 43 H 0.062 0.938 44 H 0.068 0.932 45 H 0.064 0.936 46 H 0.063 0.937 47 H 0.040 0.960 48 H 0.030 0.970 49 H 0.264 0.736 50 H 0.083 0.917 51 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.722 -7.884 -13.645 16.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.088 4.088 3 C -0.095 4.095 4 N -0.066 5.066 5 O 0.035 5.965 6 C -0.096 4.096 7 C -0.249 4.249 8 C 0.378 3.622 9 O -0.414 6.414 10 N -0.328 5.328 11 C -0.028 4.028 12 C -0.168 4.168 13 C -0.170 4.170 14 C -0.120 4.120 15 H 0.074 0.926 16 C 0.057 3.943 17 H 0.063 0.937 18 C -0.167 4.167 19 C -0.175 4.175 20 C -0.010 4.010 21 N -0.328 5.328 22 C -0.381 4.381 23 H 0.114 0.886 24 C -0.164 4.164 25 N -0.550 5.550 26 Si 0.729 3.271 27 H -0.215 1.215 28 H -0.235 1.235 29 H -0.193 1.193 30 C 0.003 3.997 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.101 0.899 35 H 0.119 0.881 36 H 0.245 0.755 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.074 0.926 40 H 0.090 0.910 41 H 0.076 0.924 42 H 0.128 0.872 43 H 0.081 0.919 44 H 0.086 0.914 45 H 0.082 0.918 46 H 0.082 0.918 47 H 0.057 0.943 48 H 0.048 0.952 49 H 0.074 0.926 50 H 0.101 0.899 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.585 -8.385 -14.667 17.506 hybrid contribution 0.136 -0.175 1.902 1.915 sum -4.448 -8.560 -12.765 16.001 Atomic orbital electron populations 1.21689 0.93728 1.02507 1.02220 1.20064 0.96545 0.87559 1.04664 1.24829 0.99548 0.98708 0.86365 1.73639 1.16597 0.92737 1.23641 1.84568 1.61971 1.26814 1.23155 1.26622 0.99251 1.00001 0.83705 1.22406 1.11673 0.94844 0.95941 1.16872 0.77475 0.84881 0.82995 1.90767 1.51352 1.19622 1.79624 1.48069 1.65661 1.11343 1.07683 1.22179 0.97889 0.83652 0.99095 1.21969 0.95672 1.01201 0.97980 1.22059 1.03898 0.97831 0.93217 1.21827 0.95828 0.96601 0.97723 0.92603 1.21027 0.91614 0.90961 0.90742 0.93663 1.22647 0.99053 0.97033 0.98001 1.22768 0.98104 0.98551 0.98084 1.21996 0.93463 0.89504 0.96061 1.44708 1.17382 1.03749 1.67005 1.18761 1.40899 0.81839 0.96620 0.88634 1.25609 0.98288 0.94760 0.97769 1.69735 1.43221 1.11112 1.30921 0.86629 0.78208 0.77997 0.84247 1.21506 1.23493 1.19276 1.21851 0.99208 1.02453 0.76157 0.92311 0.92581 0.91410 0.89886 0.88076 0.75468 0.90320 0.90393 0.92552 0.91010 0.92429 0.87248 0.91947 0.91385 0.91756 0.91831 0.94251 0.95195 0.92608 0.89896 0.88578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.90 37.16 0.37 -1.01 16 2 C -0.05 -0.55 6.51 -27.88 -0.18 -0.73 16 3 C 0.07 0.86 6.84 -79.77 -0.55 0.32 16 4 N -0.36 -4.54 12.01 34.78 0.42 -4.12 16 5 O 0.09 1.05 11.06 18.65 0.21 1.25 16 6 C -0.01 -0.14 9.97 30.41 0.30 0.16 16 7 C -0.24 -3.08 5.73 -102.90 -0.59 -3.67 16 8 C 0.59 9.00 7.66 -12.54 -0.10 8.91 16 9 O -0.54 -9.71 15.61 5.27 0.08 -9.63 16 10 N -0.60 -8.67 2.97 -173.78 -0.52 -9.19 16 11 C 0.09 1.13 5.47 -3.49 -0.02 1.11 16 12 C -0.13 -1.63 6.10 -26.39 -0.16 -1.79 16 13 C -0.13 -2.11 4.86 -26.69 -0.13 -2.24 16 14 C -0.10 -1.59 2.04 -90.50 -0.18 -1.78 16 15 H 0.06 0.87 8.12 -51.93 -0.42 0.45 16 16 C 0.16 2.96 2.90 -66.95 -0.19 2.77 16 17 H 0.05 0.87 8.12 -51.93 -0.42 0.45 16 18 C -0.13 -2.04 6.32 -24.90 -0.16 -2.20 16 19 C -0.14 -2.31 7.09 -24.58 -0.17 -2.49 16 20 C 0.11 2.31 6.16 -2.35 -0.01 2.30 16 21 N -0.60 -12.91 1.48 -162.31 -0.24 -13.15 16 22 C -0.25 -6.33 9.15 -15.06 -0.14 -6.46 16 23 H 0.10 2.46 4.82 -52.49 -0.25 2.20 16 24 C 0.04 0.99 5.49 -17.43 -0.10 0.90 16 25 N -0.91 -26.11 13.97 55.49 0.78 -25.33 16 26 Si 0.90 21.82 24.78 -169.99 -4.21 17.60 16 27 H -0.29 -6.92 6.78 56.52 0.38 -6.54 16 28 H -0.31 -7.67 7.11 56.52 0.40 -7.26 16 29 H -0.27 -6.34 6.69 56.52 0.38 -5.96 16 30 C 0.12 2.07 5.30 -3.71 -0.02 2.05 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.10 1.22 7.24 -51.93 -0.38 0.84 16 36 H 0.23 1.45 6.93 -52.49 -0.36 1.09 16 37 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.08 0.74 4.47 -51.93 -0.23 0.51 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.11 2.08 4.23 -51.93 -0.22 1.87 16 43 H 0.06 0.87 8.14 -51.92 -0.42 0.45 16 44 H 0.07 1.04 6.48 -51.93 -0.34 0.71 16 45 H 0.06 1.12 7.85 -51.93 -0.41 0.72 16 46 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.04 0.88 3.23 -51.93 -0.17 0.71 16 48 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 50 H 0.08 1.47 5.69 -51.93 -0.30 1.18 16 51 H 0.10 1.86 6.74 -51.93 -0.35 1.51 16 LS Contribution 381.74 15.07 5.75 5.75 Total: -1.00 -30.23 381.74 -7.44 -37.66 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -7.67 Total: 3.01 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: -2.03 Total: -3.86 kcal Atomic # 7 Polarization: -52.23 SS G_CDS: 0.44 Total: -51.79 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: 0.29 Total: -8.38 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.21 Total: 17.60 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.23 -7.44 -37.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963357345.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.996 kcal (2) G-P(sol) polarization free energy of solvation -30.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds