Wall clock time and date at job start Wed Apr 1 2020 05:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 109.47550 * 2 1 4 4 N 1.30014 * 127.33598 * 270.17556 * 3 2 1 5 5 O 1.20657 * 112.30158 * 180.31586 * 4 3 2 6 6 C 1.33494 * 113.15418 * 359.68624 * 5 4 3 7 7 C 1.37362 * 106.34458 * 0.02562 * 6 5 4 8 8 C 1.47392 * 128.56461 * 180.02562 * 7 6 5 9 9 O 1.21611 * 119.99800 * 212.84479 * 8 7 6 10 10 N 1.34773 * 120.00211 * 33.11858 * 8 7 6 11 11 C 1.46928 * 120.63051 * 6.11797 * 10 8 7 12 12 C 1.53622 * 108.54346 * 126.37012 * 11 10 8 13 13 C 1.53043 * 109.23792 * 54.85753 * 12 11 10 14 14 C 1.53042 * 109.54016 * 298.50803 * 13 12 11 15 15 H 1.08998 * 109.52491 * 301.40455 * 14 13 12 16 16 C 1.52996 * 109.49758 * 181.31613 * 14 13 12 17 17 H 1.09005 * 109.87312 * 49.21219 * 16 14 13 18 18 C 1.54323 * 109.88206 * 170.22636 * 16 14 13 19 19 C 1.55159 * 102.94522 * 141.61494 * 18 16 14 20 20 C 1.54911 * 101.57704 * 324.49723 * 19 18 16 21 21 N 1.47024 * 109.88612 * 288.19730 * 16 14 13 22 22 C 1.36935 * 125.64744 * 61.60461 * 21 16 14 23 23 H 1.07994 * 119.99921 * 317.30837 * 22 21 16 24 24 C 1.38816 * 119.99385 * 137.31020 * 22 21 16 25 25 N 1.31621 * 119.99550 * 172.04809 * 24 22 21 26 26 Si 1.86798 * 120.00396 * 352.05038 * 24 22 21 27 27 H 1.48500 * 109.47167 * 88.48654 * 26 24 22 28 28 H 1.48505 * 109.46774 * 208.48828 * 26 24 22 29 29 H 1.48504 * 109.46768 * 328.48390 * 26 24 22 30 30 C 1.46928 * 120.63295 * 186.40181 * 10 8 7 31 31 H 1.08997 * 109.46779 * 300.00131 * 1 2 3 32 32 H 1.09003 * 109.47153 * 59.99766 * 1 2 3 33 33 H 1.08991 * 109.47200 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.47110 * 240.00268 * 2 1 3 35 35 H 1.09003 * 109.47153 * 120.00234 * 2 1 3 36 36 H 1.08000 * 126.82359 * 179.97438 * 6 5 4 37 37 H 1.08996 * 109.58790 * 246.20707 * 11 10 8 38 38 H 1.08997 * 109.58619 * 6.62636 * 11 10 8 39 39 H 1.09000 * 109.63634 * 294.86994 * 12 11 10 40 40 H 1.08992 * 109.43225 * 174.72294 * 12 11 10 41 41 H 1.09002 * 109.45553 * 178.49147 * 13 12 11 42 42 H 1.08997 * 109.46379 * 58.53312 * 13 12 11 43 43 H 1.09008 * 110.71885 * 259.97831 * 18 16 14 44 44 H 1.08998 * 110.71983 * 23.24592 * 18 16 14 45 45 H 1.09000 * 111.00517 * 82.56960 * 19 18 16 46 46 H 1.08994 * 111.00358 * 206.38971 * 19 18 16 47 47 H 1.09000 * 110.36769 * 155.84774 * 20 19 18 48 48 H 1.09004 * 110.37022 * 278.06157 * 20 19 18 49 49 H 0.96996 * 120.00048 * 180.02562 * 25 24 22 50 50 H 1.09005 * 109.58570 * 353.37257 * 30 10 8 51 51 H 1.09001 * 109.58400 * 113.79225 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2923 2.1652 -1.0337 5 8 2.6876 3.2615 -0.7208 6 6 2.7528 3.4384 0.6008 7 6 2.3303 2.2617 1.1697 8 6 2.2099 1.9234 2.5992 9 8 2.4073 0.7831 2.9729 10 7 1.8756 2.8766 3.4914 11 6 1.4982 4.2235 3.0418 12 6 0.1330 4.5772 3.6511 13 6 0.2032 4.4192 5.1717 14 6 0.5236 2.9640 5.5209 15 1 -0.2435 2.3119 5.1034 16 6 0.5612 2.8002 7.0416 17 1 -0.3306 3.2439 7.4842 18 6 0.6386 1.3027 7.4063 19 6 1.6033 1.2903 8.6215 20 6 2.5951 2.4183 8.2426 21 7 1.7642 3.4478 7.5848 22 6 2.0629 4.7811 7.4935 23 1 1.8998 5.3087 6.5654 24 6 2.5755 5.4542 8.5940 25 7 3.0087 6.6905 8.4659 26 14 2.6506 4.6057 10.2564 27 1 3.9351 3.8708 10.3795 28 1 2.5561 5.6217 11.3354 29 1 1.5201 3.6502 10.3758 30 6 1.8877 2.5905 4.9325 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 3.0748 4.3293 1.1194 37 1 2.2469 4.9427 3.3737 38 1 1.4298 4.2399 1.9541 39 1 -0.6306 3.9102 3.2509 40 1 -0.1182 5.6086 3.4037 41 1 -0.7558 4.6952 5.6101 42 1 0.9838 5.0682 5.5686 43 1 -0.3433 0.9234 7.6895 44 1 1.0523 0.7253 6.5795 45 1 1.0734 1.5294 9.5435 46 1 2.1147 0.3314 8.7046 47 1 3.0649 2.8268 9.1373 48 1 3.3529 2.0422 7.5552 49 1 3.3673 7.1608 9.2348 50 1 2.0765 1.5289 5.0927 51 1 2.6677 3.1793 5.4154 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963357345.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:52:02 Heat of formation + Delta-G solvation = 40.595519 kcal Electronic energy + Delta-G solvation = -32672.589310 eV Core-core repulsion = 28575.502884 eV Total energy + Delta-G solvation = -4097.086426 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -45.99600 -41.38781 -39.84130 -37.81996 -36.26731 -34.63609 -34.49250 -33.04069 -32.28080 -32.22159 -31.72430 -28.71519 -27.19539 -26.26019 -25.52093 -24.61792 -24.13014 -22.66543 -21.90635 -21.56985 -20.87684 -20.19076 -18.99799 -18.80376 -18.32273 -17.82632 -17.79462 -17.08637 -16.29219 -16.17409 -15.78582 -15.52133 -15.32051 -15.09634 -14.95504 -14.67607 -14.61798 -14.37820 -14.24165 -13.98930 -13.80773 -13.64070 -13.47969 -13.08422 -13.01052 -12.80528 -12.73585 -12.55341 -12.51894 -12.38150 -12.05240 -12.02901 -11.96194 -11.71042 -11.43149 -11.32686 -11.15070 -11.07527 -11.00661 -10.92649 -10.63668 -10.56456 -9.62872 -8.52837 -8.06747 -5.58973 0.08115 0.71065 1.32623 1.41876 1.51985 1.66902 1.94010 2.23155 2.46625 2.94326 3.18892 3.26061 3.36119 3.55913 3.81089 3.86123 3.93427 4.02664 4.09131 4.16798 4.19183 4.22804 4.25057 4.27915 4.32139 4.41868 4.48895 4.53042 4.65073 4.69342 4.80610 4.82390 4.83313 4.88726 4.92538 4.99510 5.04221 5.06720 5.07916 5.09218 5.20290 5.22811 5.25889 5.32041 5.37697 5.51839 5.54629 5.64718 6.04008 6.35411 6.45308 6.93358 7.01113 7.15879 7.62017 8.33333 9.07371 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016616 B = 0.003271 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.761926 B = 8557.442492 C = 9318.252462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.052 4.052 3 C 0.061 3.939 4 N -0.373 5.373 5 O 0.100 5.900 6 C 0.018 3.982 7 C -0.270 4.270 8 C 0.593 3.407 9 O -0.571 6.571 10 N -0.596 5.596 11 C 0.093 3.907 12 C -0.123 4.123 13 C -0.130 4.130 14 C -0.090 4.090 15 H 0.070 0.930 16 C 0.157 3.843 17 H 0.036 0.964 18 C -0.119 4.119 19 C -0.129 4.129 20 C 0.105 3.895 21 N -0.613 5.613 22 C -0.225 4.225 23 H 0.086 0.914 24 C -0.021 4.021 25 N -0.954 5.954 26 Si 0.944 3.056 27 H -0.287 1.287 28 H -0.320 1.320 29 H -0.257 1.257 30 C 0.137 3.863 31 H 0.044 0.956 32 H 0.059 0.941 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.265 0.735 37 H 0.080 0.920 38 H 0.108 0.892 39 H 0.065 0.935 40 H 0.091 0.909 41 H 0.054 0.946 42 H 0.075 0.925 43 H 0.088 0.912 44 H 0.075 0.925 45 H 0.060 0.940 46 H 0.092 0.908 47 H 0.020 0.980 48 H 0.031 0.969 49 H 0.259 0.741 50 H 0.072 0.928 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.935 -9.179 -15.300 18.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.090 4.090 3 C -0.102 4.102 4 N -0.080 5.080 5 O 0.041 5.959 6 C -0.064 4.064 7 C -0.278 4.278 8 C 0.381 3.619 9 O -0.452 6.452 10 N -0.327 5.327 11 C -0.029 4.029 12 C -0.161 4.161 13 C -0.167 4.167 14 C -0.111 4.111 15 H 0.088 0.912 16 C 0.051 3.949 17 H 0.054 0.946 18 C -0.157 4.157 19 C -0.167 4.167 20 C -0.019 4.019 21 N -0.340 5.340 22 C -0.354 4.354 23 H 0.103 0.897 24 C -0.217 4.217 25 N -0.600 5.600 26 Si 0.777 3.223 27 H -0.215 1.215 28 H -0.249 1.249 29 H -0.182 1.182 30 C 0.015 3.985 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.103 0.897 34 H 0.114 0.886 35 H 0.104 0.896 36 H 0.280 0.720 37 H 0.098 0.902 38 H 0.126 0.874 39 H 0.084 0.916 40 H 0.109 0.891 41 H 0.073 0.927 42 H 0.093 0.907 43 H 0.106 0.894 44 H 0.093 0.907 45 H 0.079 0.921 46 H 0.110 0.890 47 H 0.038 0.962 48 H 0.049 0.951 49 H 0.068 0.932 50 H 0.090 0.910 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.823 -9.706 -16.346 19.882 hybrid contribution 0.519 0.205 2.305 2.372 sum -5.304 -9.501 -14.041 17.764 Atomic orbital electron populations 1.21647 0.92679 1.03493 1.01678 1.20112 0.97421 0.86918 1.04523 1.25103 0.99393 0.99347 0.86335 1.73648 1.17313 0.93233 1.23802 1.84566 1.61463 1.26286 1.23561 1.27188 0.96283 0.99871 0.83037 1.22199 1.14500 0.96432 0.94649 1.17125 0.76523 0.84318 0.83891 1.90742 1.52918 1.21126 1.80400 1.48073 1.65503 1.12375 1.06712 1.22374 0.97553 0.82169 1.00817 1.21919 0.96266 1.02702 0.95209 1.21919 1.02269 0.96686 0.95805 1.21706 0.95891 0.97145 0.96311 0.91173 1.21202 0.89562 0.92379 0.91726 0.94619 1.22623 1.00268 0.95096 0.97694 1.22742 0.97430 0.98350 0.98208 1.22106 0.94392 0.90295 0.95110 1.44804 1.19132 1.02971 1.67077 1.18889 1.37522 0.83197 0.95777 0.89722 1.26149 0.99780 0.95320 1.00433 1.69843 1.46215 1.12693 1.31214 0.85850 0.78410 0.76850 0.81222 1.21536 1.24946 1.18154 1.21470 0.98365 1.01043 0.77577 0.93646 0.92157 0.89738 0.88591 0.89572 0.71980 0.90196 0.87421 0.91636 0.89092 0.92735 0.90695 0.89354 0.90691 0.92086 0.88995 0.96210 0.95063 0.93223 0.90957 0.91694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.90 71.98 0.71 -1.70 16 2 C -0.05 -1.07 6.51 29.85 0.19 -0.87 16 3 C 0.06 1.43 6.84 45.16 0.31 1.74 16 4 N -0.37 -8.63 12.01 -44.78 -0.54 -9.17 16 5 O 0.10 1.93 11.06 76.98 0.85 2.78 16 6 C 0.02 0.30 9.97 67.61 0.67 0.97 16 7 C -0.27 -6.37 5.73 -18.75 -0.11 -6.48 16 8 C 0.59 17.34 7.66 86.65 0.66 18.00 16 9 O -0.57 -20.52 15.61 -4.07 -0.06 -20.58 16 10 N -0.60 -16.51 2.97 -821.98 -2.44 -18.95 16 11 C 0.09 1.98 5.47 86.51 0.47 2.45 16 12 C -0.12 -2.79 6.10 30.82 0.19 -2.60 16 13 C -0.13 -3.99 4.86 30.62 0.15 -3.84 16 14 C -0.09 -2.79 2.04 -10.72 -0.02 -2.81 16 15 H 0.07 2.03 8.12 -2.39 -0.02 2.01 16 16 C 0.16 5.51 2.90 45.34 0.13 5.64 16 17 H 0.04 1.33 8.12 -2.38 -0.02 1.31 16 18 C -0.12 -3.44 6.32 31.78 0.20 -3.24 16 19 C -0.13 -4.05 7.09 31.99 0.23 -3.82 16 20 C 0.10 4.18 6.16 86.79 0.53 4.72 16 21 N -0.61 -26.21 1.48 -667.42 -0.99 -27.20 16 22 C -0.23 -11.44 9.15 84.03 0.77 -10.67 16 23 H 0.09 4.50 4.82 -2.91 -0.01 4.48 16 24 C -0.02 -1.16 5.49 84.86 0.47 -0.69 16 25 N -0.95 -56.80 13.97 21.65 0.30 -56.50 16 26 Si 0.94 45.95 24.78 68.60 1.70 47.65 16 27 H -0.29 -13.78 6.78 99.48 0.67 -13.10 16 28 H -0.32 -16.09 7.11 99.48 0.71 -15.38 16 29 H -0.26 -11.84 6.69 99.48 0.67 -11.17 16 30 C 0.14 4.50 5.30 86.36 0.46 4.96 16 31 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.09 2.05 7.24 -2.39 -0.02 2.03 16 36 H 0.26 2.23 6.93 -2.91 -0.02 2.21 16 37 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.11 1.66 4.47 -2.39 -0.01 1.65 16 39 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.07 2.88 4.23 -2.39 -0.01 2.87 16 43 H 0.09 2.15 8.14 -2.38 -0.02 2.13 16 44 H 0.07 2.10 6.48 -2.39 -0.02 2.09 16 45 H 0.06 1.97 7.85 -2.39 -0.02 1.95 16 46 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 47 H 0.02 0.88 3.23 -2.39 -0.01 0.87 16 48 H 0.03 1.24 8.14 -2.38 -0.02 1.22 16 49 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 50 H 0.07 2.53 5.69 -2.38 -0.01 2.51 16 51 H 0.06 2.54 6.74 -2.39 -0.02 2.53 16 Total: -1.00 -67.98 381.74 5.73 -62.26 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: 0.88 Total: 17.94 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: 6.02 Total: 1.77 kcal Atomic # 7 Polarization: -108.15 SS G_CDS: -3.66 Total: -111.81 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: 0.79 Total: -17.80 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 1.70 Total: 47.65 kcal Total: -67.98 5.73 -62.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963357345.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.854 kcal (2) G-P(sol) polarization free energy of solvation -67.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds