Wall clock time and date at job start Wed Apr 1 2020 05:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50700 * 109.47446 * 2 1 4 4 O 1.33493 * 126.82860 * 269.68580 * 3 2 1 5 5 N 1.20660 * 113.15520 * 179.77425 * 4 3 2 6 6 C 1.30011 * 112.30252 * 0.50823 * 5 4 3 7 7 C 1.37359 * 126.82972 * 89.99817 * 3 2 1 8 8 C 1.47396 * 128.56639 * 0.02562 * 7 3 2 9 9 O 1.21605 * 119.99927 * 331.23163 * 8 7 3 10 10 N 1.34775 * 120.00296 * 151.23462 * 8 7 3 11 11 C 1.46929 * 120.62586 * 4.19481 * 10 8 7 12 12 C 1.52761 * 109.00745 * 233.58501 * 11 10 8 13 13 C 1.53040 * 109.38525 * 305.59392 * 12 11 10 14 14 C 1.53035 * 109.53884 * 61.23666 * 13 12 11 15 15 H 1.08999 * 109.50030 * 58.59258 * 14 13 12 16 16 C 1.53002 * 109.49699 * 178.68679 * 14 13 12 17 17 H 1.08997 * 109.87586 * 179.53395 * 16 14 13 18 18 C 1.54323 * 109.88393 * 58.35276 * 16 14 13 19 19 C 1.55154 * 102.94553 * 218.39064 * 18 16 14 20 20 C 1.54912 * 101.58028 * 35.50317 * 19 18 16 21 21 N 1.47030 * 109.88136 * 300.54666 * 16 14 13 22 22 C 1.36936 * 125.64700 * 298.32478 * 21 16 14 23 23 H 1.08001 * 120.00145 * 349.23981 * 22 21 16 24 24 C 1.38809 * 119.99827 * 169.24790 * 22 21 16 25 25 N 1.31624 * 120.00150 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 119.99942 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47450 * 89.99711 * 26 24 22 28 28 H 1.48507 * 109.47301 * 209.99988 * 26 24 22 29 29 H 1.48502 * 109.47295 * 329.99766 * 26 24 22 30 30 C 1.46922 * 120.63393 * 184.47836 * 10 8 7 31 31 H 1.08990 * 109.47581 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47002 * 60.00085 * 1 2 3 33 33 H 1.08997 * 109.47163 * 300.00761 * 1 2 3 34 34 H 1.09006 * 109.47002 * 119.99915 * 2 1 3 35 35 H 1.09001 * 109.47209 * 240.00004 * 2 1 3 36 36 H 1.08000 * 127.33309 * 179.66305 * 6 5 4 37 37 H 1.09000 * 109.59086 * 353.41974 * 11 10 8 38 38 H 1.08996 * 109.58607 * 113.84961 * 11 10 8 39 39 H 1.09004 * 109.56503 * 185.55142 * 12 11 10 40 40 H 1.09006 * 109.36217 * 65.50197 * 12 11 10 41 41 H 1.09000 * 109.45762 * 301.21459 * 13 12 11 42 42 H 1.08998 * 109.46372 * 181.26125 * 13 12 11 43 43 H 1.08998 * 110.72085 * 336.75931 * 18 16 14 44 44 H 1.09004 * 110.71965 * 100.03049 * 18 16 14 45 45 H 1.08995 * 111.00466 * 277.43272 * 19 18 16 46 46 H 1.08998 * 111.00879 * 153.57627 * 19 18 16 47 47 H 1.09001 * 110.36859 * 204.15618 * 20 19 18 48 48 H 1.08997 * 110.46028 * 81.87974 * 20 19 18 49 49 H 0.96995 * 120.00125 * 180.02562 * 25 24 22 50 50 H 1.09001 * 109.58700 * 246.15334 * 30 10 8 51 51 H 1.09001 * 109.58715 * 6.43478 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.3047 2.1732 -1.0685 5 7 2.6900 3.2806 -0.7833 6 6 2.7550 3.4645 0.5021 7 6 2.3069 2.1971 1.0994 8 6 2.1834 1.8465 2.5258 9 8 1.3570 1.0284 2.8815 10 7 2.9864 2.4327 3.4358 11 6 3.9259 3.4889 3.0350 12 6 5.3289 3.1123 3.5077 13 6 5.3002 2.8337 5.0123 14 6 4.3611 1.6595 5.2976 15 1 4.7022 0.7799 4.7517 16 6 4.3584 1.3608 6.7982 17 1 3.6848 0.5303 7.0094 18 6 3.9142 2.6137 7.5820 19 6 4.8295 2.5828 8.8344 20 6 6.1471 2.0228 8.2429 21 7 5.7191 1.0267 7.2439 22 6 6.4648 -0.0344 6.8045 23 1 6.0053 -0.8058 6.2044 24 6 7.8115 -0.1186 7.1305 25 7 8.3717 0.8218 7.8616 26 14 8.8287 -1.5663 6.5317 27 1 9.4239 -1.2406 5.2108 28 1 9.9125 -1.8471 7.5073 29 1 7.9584 -2.7625 6.4009 30 6 2.9432 2.0236 4.8462 31 1 -0.3634 -1.0275 -0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 0.5139 0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.8933 -0.5138 -0.8900 36 1 3.0713 4.3574 1.0207 37 1 3.9222 3.5888 1.9496 38 1 3.6307 4.4333 3.4920 39 1 6.0158 3.9334 3.3027 40 1 5.6609 2.2189 2.9786 41 1 4.9447 3.7194 5.5388 42 1 6.3050 2.5867 5.3551 43 1 4.0905 3.5168 6.9977 44 1 2.8654 2.5374 7.8689 45 1 4.4276 1.9140 9.5955 46 1 4.9765 3.5854 9.2358 47 1 6.7409 1.5465 9.0231 48 1 6.7185 2.8183 7.7647 49 1 9.3128 0.7631 8.0891 50 1 2.5661 2.8461 5.4539 51 1 2.2892 1.1585 4.9559 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963365779.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:16 Heat of formation + Delta-G solvation = 41.097770 kcal Electronic energy + Delta-G solvation = -32260.769798 eV Core-core repulsion = 28163.705151 eV Total energy + Delta-G solvation = -4097.064647 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -46.00896 -41.38783 -39.79271 -37.84144 -35.71355 -35.17815 -34.51715 -33.57071 -32.54347 -31.35167 -31.14396 -28.33257 -27.23096 -26.47055 -25.22904 -24.94508 -24.06054 -22.86445 -22.41498 -21.80105 -20.33743 -19.72977 -18.92026 -18.73778 -18.42026 -17.77639 -17.17820 -16.82549 -16.37352 -16.12152 -15.78601 -15.64629 -15.61103 -15.36628 -14.86577 -14.68035 -14.37386 -14.29667 -13.99711 -13.79048 -13.62205 -13.56573 -13.24165 -13.16206 -12.86991 -12.82096 -12.76007 -12.49230 -12.43268 -12.03143 -11.98855 -11.92951 -11.83391 -11.77619 -11.57341 -11.46486 -11.36596 -11.27406 -10.96383 -10.91748 -10.63493 -10.54650 -9.64588 -8.75768 -7.81685 -5.16033 0.02635 0.70353 1.42917 1.43484 1.51751 1.62284 1.81211 2.12901 2.49548 3.14015 3.23708 3.35142 3.46196 3.67048 3.72061 3.86212 3.92228 4.05133 4.10873 4.14106 4.24481 4.28631 4.30515 4.32786 4.36895 4.44542 4.54593 4.56938 4.65408 4.75734 4.77256 4.81050 4.83680 4.86942 4.93532 4.96190 5.06520 5.10546 5.18710 5.24969 5.30114 5.31724 5.44493 5.51416 5.52028 5.59893 5.68494 5.75455 5.86176 6.29507 6.31397 6.99025 7.08072 7.16049 7.85179 8.50745 9.27350 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012953 B = 0.003098 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2161.069164 B = 9037.300868 C = 9684.187874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.047 4.047 3 C 0.053 3.947 4 O 0.089 5.911 5 N -0.371 5.371 6 C 0.027 3.973 7 C -0.277 4.277 8 C 0.594 3.406 9 O -0.565 6.565 10 N -0.596 5.596 11 C 0.089 3.911 12 C -0.129 4.129 13 C -0.097 4.097 14 C -0.093 4.093 15 H 0.031 0.969 16 C 0.158 3.842 17 H 0.022 0.978 18 C -0.116 4.116 19 C -0.137 4.137 20 C 0.176 3.824 21 N -0.607 5.607 22 C -0.224 4.224 23 H 0.066 0.934 24 C -0.058 4.058 25 N -0.944 5.944 26 Si 0.962 3.038 27 H -0.289 1.289 28 H -0.294 1.294 29 H -0.275 1.275 30 C 0.129 3.871 31 H 0.087 0.913 32 H 0.068 0.932 33 H 0.046 0.954 34 H 0.090 0.910 35 H 0.117 0.883 36 H 0.239 0.761 37 H 0.110 0.890 38 H 0.103 0.897 39 H 0.092 0.908 40 H 0.041 0.959 41 H 0.076 0.924 42 H 0.036 0.964 43 H 0.085 0.915 44 H 0.088 0.912 45 H 0.057 0.943 46 H 0.083 0.917 47 H 0.035 0.965 48 H -0.003 1.003 49 H 0.245 0.755 50 H 0.094 0.906 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.582 7.702 -13.765 21.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.085 4.085 3 C -0.011 4.011 4 O 0.031 5.969 5 N -0.078 5.078 6 C -0.155 4.155 7 C -0.285 4.285 8 C 0.382 3.618 9 O -0.445 6.445 10 N -0.327 5.327 11 C -0.033 4.033 12 C -0.167 4.167 13 C -0.134 4.134 14 C -0.114 4.114 15 H 0.050 0.950 16 C 0.051 3.949 17 H 0.040 0.960 18 C -0.154 4.154 19 C -0.176 4.176 20 C 0.051 3.949 21 N -0.331 5.331 22 C -0.353 4.353 23 H 0.084 0.916 24 C -0.251 4.251 25 N -0.593 5.593 26 Si 0.792 3.208 27 H -0.217 1.217 28 H -0.220 1.220 29 H -0.200 1.200 30 C 0.006 3.994 31 H 0.105 0.895 32 H 0.087 0.913 33 H 0.065 0.935 34 H 0.109 0.891 35 H 0.135 0.865 36 H 0.255 0.745 37 H 0.128 0.872 38 H 0.121 0.879 39 H 0.111 0.889 40 H 0.059 0.941 41 H 0.094 0.906 42 H 0.055 0.945 43 H 0.103 0.897 44 H 0.107 0.893 45 H 0.076 0.924 46 H 0.101 0.899 47 H 0.054 0.946 48 H 0.015 0.985 49 H 0.054 0.946 50 H 0.112 0.888 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -14.547 7.929 -14.629 22.102 hybrid contribution 1.355 -1.339 0.824 2.075 sum -13.192 6.590 -13.805 20.200 Atomic orbital electron populations 1.21690 0.91938 1.03939 1.02249 1.20415 0.97951 0.84433 1.05700 1.25219 0.94204 0.96842 0.84831 1.84559 1.61547 1.17546 1.33255 1.73670 1.17239 0.98717 1.18141 1.27070 0.99626 0.99915 0.88879 1.22031 1.14807 0.96936 0.94704 1.17067 0.80639 0.80258 0.83796 1.90770 1.37106 1.35718 1.80921 1.47976 1.38101 1.38213 1.08368 1.22500 0.87745 0.90467 1.02568 1.21815 0.97236 1.01769 0.95927 1.21351 0.99058 0.97444 0.95568 1.21728 0.94526 0.97711 0.97430 0.95038 1.21086 0.86373 0.95498 0.91911 0.95990 1.22685 0.99531 0.97208 0.95947 1.22882 0.96507 1.00830 0.97338 1.21263 0.92893 0.89835 0.90879 1.44674 1.13485 1.28846 1.46103 1.19152 0.90769 0.98755 1.26671 0.91595 1.25438 0.97518 1.00647 1.01516 1.70125 1.11083 1.35240 1.42880 0.85317 0.78621 0.79702 0.77179 1.21678 1.22034 1.20020 1.21633 0.96458 1.01325 0.79940 0.89461 0.91304 0.93487 0.89145 0.86458 0.74480 0.87229 0.87863 0.88915 0.94057 0.90580 0.94534 0.89662 0.89320 0.92385 0.89873 0.94640 0.98484 0.94579 0.88839 0.90778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.89 71.98 0.71 -1.44 16 2 C -0.05 -0.79 5.99 29.85 0.18 -0.61 16 3 C 0.05 1.11 6.80 25.48 0.17 1.28 16 4 O 0.09 1.85 11.06 76.98 0.85 2.70 16 5 N -0.37 -7.89 12.01 -54.19 -0.65 -8.54 16 6 C 0.03 0.49 10.17 87.29 0.89 1.38 16 7 C -0.28 -6.30 5.99 -18.74 -0.11 -6.41 16 8 C 0.59 16.21 7.60 86.66 0.66 16.87 16 9 O -0.56 -18.57 15.40 -4.05 -0.06 -18.63 16 10 N -0.60 -14.89 2.98 -823.66 -2.45 -17.34 16 11 C 0.09 1.67 5.80 86.22 0.50 2.17 16 12 C -0.13 -3.22 6.06 30.53 0.19 -3.03 16 13 C -0.10 -3.09 4.73 30.62 0.14 -2.95 16 14 C -0.09 -3.17 2.11 -10.72 -0.02 -3.19 16 15 H 0.03 1.31 8.01 -2.39 -0.02 1.29 16 16 C 0.16 6.06 2.94 45.34 0.13 6.19 16 17 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 18 C -0.12 -3.47 5.13 31.78 0.16 -3.30 16 19 C -0.14 -4.73 7.09 31.99 0.23 -4.51 16 20 C 0.18 8.33 5.49 86.86 0.48 8.80 16 21 N -0.61 -29.67 2.34 -668.24 -1.57 -31.24 16 22 C -0.22 -12.36 9.84 84.03 0.83 -11.53 16 23 H 0.07 3.64 7.83 -2.91 -0.02 3.61 16 24 C -0.06 -3.26 5.48 84.86 0.46 -2.80 16 25 N -0.94 -55.76 10.43 21.65 0.23 -55.54 16 26 Si 0.96 46.16 29.55 68.60 2.03 48.18 16 27 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 28 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 29 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 30 C 0.13 3.57 5.58 86.36 0.48 4.05 16 31 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 33 H 0.05 0.95 7.98 -2.39 -0.02 0.93 16 34 H 0.09 1.84 7.63 -2.38 -0.02 1.82 16 35 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.24 2.59 6.26 -2.91 -0.02 2.57 16 37 H 0.11 1.70 3.09 -2.39 -0.01 1.69 16 38 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.04 1.21 8.14 -2.38 -0.02 1.19 16 41 H 0.08 2.11 6.05 -2.39 -0.01 2.09 16 42 H 0.04 1.55 7.57 -2.39 -0.02 1.53 16 43 H 0.09 2.26 5.51 -2.39 -0.01 2.24 16 44 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 45 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 46 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 47 H 0.04 1.95 6.64 -2.39 -0.02 1.93 16 48 H 0.00 -0.14 8.13 -2.39 -0.02 -0.16 16 49 H 0.24 14.19 8.31 -92.71 -0.77 13.42 16 50 H 0.09 2.15 7.01 -2.39 -0.02 2.13 16 51 H 0.07 2.30 7.03 -2.39 -0.02 2.29 16 Total: -1.00 -70.87 390.23 5.39 -65.48 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: 0.94 Total: 13.96 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: 6.08 Total: 0.97 kcal Atomic # 7 Polarization: -108.22 SS G_CDS: -4.44 Total: -112.66 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: 0.79 Total: -15.93 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.18 kcal Total: -70.87 5.39 -65.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963365779.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.582 kcal (2) G-P(sol) polarization free energy of solvation -70.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds