Wall clock time and date at job start Wed Apr 1 2020 05:39:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.50705 * 109.46942 * 2 1
4 4 O 1.33485 * 126.83167 * 270.03078 * 3 2 1
5 5 N 1.20659 * 113.15587 * 179.97438 * 4 3 2
6 6 C 1.30017 * 112.30331 * 359.71376 * 5 4 3
7 7 C 1.37358 * 126.82278 * 90.00015 * 3 2 1
8 8 C 1.47399 * 128.57158 * 0.02562 * 7 3 2
9 9 O 1.21617 * 119.99344 * 326.80865 * 8 7 3
10 10 N 1.34767 * 120.00647 * 146.80326 * 8 7 3
11 11 C 1.46931 * 120.63020 * 3.11360 * 10 8 7
12 12 C 1.53188 * 108.78032 * 233.63082 * 11 10 8
13 13 C 1.53037 * 109.31558 * 305.36463 * 12 11 10
14 14 C 1.53043 * 109.53373 * 61.36086 * 13 12 11
15 15 H 1.09006 * 109.52475 * 58.61066 * 14 13 12
16 16 C 1.53005 * 109.49578 * 178.68281 * 14 13 12
17 17 H 1.09001 * 109.87660 * 294.82338 * 16 14 13
18 18 C 1.54326 * 109.87821 * 55.99994 * 16 14 13
19 19 C 1.55449 * 102.96676 * 141.61084 * 18 16 14
20 20 C 1.54913 * 101.45024 * 324.51416 * 19 18 16
21 21 N 1.47029 * 109.88219 * 173.80361 * 16 14 13
22 22 C 1.36935 * 125.64277 * 61.66788 * 21 16 14
23 23 H 1.07997 * 120.00383 * 9.74741 * 22 21 16
24 24 C 1.38814 * 119.99613 * 189.73919 * 22 21 16
25 25 N 1.31618 * 119.99928 * 0.02562 * 24 22 21
26 26 Si 1.86800 * 119.99974 * 179.97438 * 24 22 21
27 27 H 1.48503 * 109.46925 * 60.00138 * 26 24 22
28 28 H 1.48494 * 109.47193 * 180.02562 * 26 24 22
29 29 H 1.48505 * 109.47103 * 300.00635 * 26 24 22
30 30 C 1.46926 * 120.63556 * 183.14223 * 10 8 7
31 31 H 1.09005 * 109.46968 * 179.97438 * 1 2 3
32 32 H 1.08995 * 109.47373 * 299.99339 * 1 2 3
33 33 H 1.08998 * 109.47401 * 59.99764 * 1 2 3
34 34 H 1.09000 * 109.46963 * 240.00889 * 2 1 3
35 35 H 1.08998 * 109.47401 * 120.00236 * 2 1 3
36 36 H 1.08001 * 127.33838 * 180.30038 * 6 5 4
37 37 H 1.09002 * 109.58343 * 353.42358 * 11 10 8
38 38 H 1.09001 * 109.58533 * 113.84347 * 11 10 8
39 39 H 1.09001 * 109.49642 * 65.31413 * 12 11 10
40 40 H 1.09005 * 109.49953 * 185.37795 * 12 11 10
41 41 H 1.08998 * 109.46223 * 301.34843 * 13 12 11
42 42 H 1.08993 * 109.46410 * 181.38257 * 13 12 11
43 43 H 1.09000 * 110.71858 * 259.96591 * 18 16 14
44 44 H 1.08998 * 110.72554 * 23.24638 * 18 16 14
45 45 H 1.09002 * 111.11837 * 206.46239 * 19 18 16
46 46 H 1.08995 * 111.01675 * 82.52617 * 19 18 16
47 47 H 1.08998 * 110.36532 * 278.11298 * 20 19 18
48 48 H 1.08997 * 110.36474 * 155.90060 * 20 19 18
49 49 H 0.97004 * 119.99998 * 180.02562 * 25 24 22
50 50 H 1.08996 * 109.58612 * 6.57750 * 30 10 8
51 51 H 1.09006 * 109.69924 * 246.22852 * 30 10 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4209 0.0000
4 8 2.2985 2.1755 -1.0684
5 7 2.6889 3.2810 -0.7831
6 6 2.7485 3.4668 0.5023
7 6 2.3067 2.1970 1.0995
8 6 2.1833 1.8464 2.5259
9 8 1.3046 1.0895 2.8921
10 7 3.0441 2.3644 3.4242
11 6 4.0679 3.3326 3.0079
12 6 5.4390 2.8302 3.4709
13 6 5.3991 2.5667 4.9779
14 6 4.3605 1.4843 5.2807
15 1 4.6156 0.5730 4.7397
16 6 4.3445 1.1982 6.7837
17 1 5.2981 0.7673 7.0891
18 6 4.0808 2.5035 7.5636
19 6 3.1558 2.0367 8.7224
20 6 2.3126 0.9426 8.0211
21 7 3.2506 0.2696 7.1044
22 6 3.1244 -1.0089 6.6303
23 1 3.9399 -1.4679 6.0912
24 6 1.9483 -1.7150 6.8429
25 7 0.9544 -1.1554 7.4997
26 14 1.7758 -3.4587 6.1956
27 1 2.8245 -4.3178 6.8019
28 1 0.4349 -3.9883 6.5512
29 1 1.9309 -3.4562 4.7187
30 6 2.9771 1.9714 4.8383
31 1 -0.3633 -1.0277 -0.0005
32 1 -0.3634 0.5137 0.8900
33 1 -0.3634 0.5138 -0.8899
34 1 1.8933 -0.5137 -0.8901
35 1 1.8934 -0.5138 0.8899
36 1 3.0585 4.3619 1.0211
37 1 4.0610 3.4275 1.9220
38 1 3.8611 4.3014 3.4626
39 1 5.6842 1.9067 2.9464
40 1 6.1954 3.5842 3.2528
41 1 5.1296 3.4847 5.5001
42 1 6.3805 2.2326 5.3142
43 1 5.0118 2.9136 7.9551
44 1 3.5715 3.2329 6.9338
45 1 2.5235 2.8524 9.0731
46 1 3.7380 1.6158 9.5420
47 1 1.4941 1.3951 7.4613
48 1 1.9247 0.2349 8.7537
49 1 0.1327 -1.6489 7.6485
50 1 2.2506 1.1681 4.9602
51 1 2.6802 2.8276 5.4440
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000963365780.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:39:20
Heat of formation + Delta-G solvation = 54.576300 kcal
Electronic energy + Delta-G solvation = -32861.967933 eV
Core-core repulsion = 28765.487759 eV
Total energy + Delta-G solvation = -4096.480174 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.90 seconds
Orbital eigenvalues (eV)
-45.02501 -40.03676 -38.21699 -36.43956 -34.73808 -34.00845 -32.85577 -32.19162
-31.06265 -30.32015 -29.23342 -26.94677 -25.95500 -24.56900 -24.15023 -23.84567
-22.84711 -21.69015 -21.07010 -20.01304 -19.09834 -18.36842 -17.87762 -17.52683
-16.79176 -16.52503 -15.95073 -14.98949 -14.94828 -14.71092 -14.52588 -14.44655
-14.03497 -13.80904 -13.77525 -13.60324 -13.10759 -13.02608 -12.75219 -12.64311
-12.15111 -11.95777 -11.83556 -11.66322 -11.60989 -11.50033 -11.27862 -11.04320
-10.99769 -10.87471 -10.77253 -10.67613 -10.32171 -10.17933 -10.05742 -9.85710
-9.81764 -9.71265 -9.55607 -9.50880 -9.43100 -8.51762 -8.29451 -6.74456
-5.64502 -3.00299 1.09845 1.67590 2.69655 3.02302 3.34180 3.45540
3.50613 3.50864 4.07569 4.21042 4.54619 4.56514 4.75182 4.84404
4.99658 5.01805 5.11438 5.13001 5.23482 5.33595 5.38113 5.48791
5.53709 5.59617 5.62575 5.67008 5.67632 5.77054 5.79677 5.87188
5.92438 5.95425 5.98019 6.07852 6.17999 6.21613 6.22100 6.35038
6.38530 6.52416 6.61237 6.72662 6.85336 6.88054 6.98418 7.09607
7.61896 7.64744 7.66662 7.88928 8.02663 8.36794 8.39037 9.27984
9.89572 10.55801 11.45450
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.010001 B = 0.004445 C = 0.003370
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2799.058206 B = 6297.835306 C = 8306.320280
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.045 4.045
3 C 0.043 3.957
4 O 0.091 5.909
5 N -0.358 5.358
6 C 0.014 3.986
7 C -0.250 4.250
8 C 0.588 3.412
9 O -0.513 6.513
10 N -0.600 5.600
11 C 0.091 3.909
12 C -0.133 4.133
13 C -0.116 4.116
14 C -0.106 4.106
15 H 0.068 0.932
16 C 0.168 3.832
17 H 0.035 0.965
18 C -0.127 4.127
19 C -0.150 4.150
20 C 0.169 3.831
21 N -0.593 5.593
22 C -0.225 4.225
23 H 0.072 0.928
24 C 0.000 4.000
25 N -0.916 5.916
26 Si 0.906 3.094
27 H -0.287 1.287
28 H -0.291 1.291
29 H -0.285 1.285
30 C 0.129 3.871
31 H 0.071 0.929
32 H 0.072 0.928
33 H 0.055 0.945
34 H 0.089 0.911
35 H 0.106 0.894
36 H 0.204 0.796
37 H 0.087 0.913
38 H 0.068 0.932
39 H 0.064 0.936
40 H 0.069 0.931
41 H 0.063 0.937
42 H 0.061 0.939
43 H 0.056 0.944
44 H 0.063 0.937
45 H 0.055 0.945
46 H 0.057 0.943
47 H 0.020 0.980
48 H 0.080 0.920
49 H 0.252 0.748
50 H 0.116 0.884
51 H 0.060 0.940
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.050 10.295 -11.401 16.509
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.083 4.083
3 C -0.021 4.021
4 O 0.030 5.970
5 N -0.063 5.063
6 C -0.168 4.168
7 C -0.257 4.257
8 C 0.375 3.625
9 O -0.389 6.389
10 N -0.333 5.333
11 C -0.032 4.032
12 C -0.171 4.171
13 C -0.154 4.154
14 C -0.127 4.127
15 H 0.087 0.913
16 C 0.060 3.940
17 H 0.052 0.948
18 C -0.165 4.165
19 C -0.189 4.189
20 C 0.044 3.956
21 N -0.317 5.317
22 C -0.354 4.354
23 H 0.090 0.910
24 C -0.197 4.197
25 N -0.563 5.563
26 Si 0.737 3.263
27 H -0.214 1.214
28 H -0.216 1.216
29 H -0.211 1.211
30 C 0.008 3.992
31 H 0.090 0.910
32 H 0.091 0.909
33 H 0.074 0.926
34 H 0.107 0.893
35 H 0.125 0.875
36 H 0.220 0.780
37 H 0.105 0.895
38 H 0.086 0.914
39 H 0.082 0.918
40 H 0.088 0.912
41 H 0.082 0.918
42 H 0.080 0.920
43 H 0.074 0.926
44 H 0.082 0.918
45 H 0.074 0.926
46 H 0.075 0.925
47 H 0.038 0.962
48 H 0.098 0.902
49 H 0.063 0.937
50 H 0.135 0.865
51 H 0.078 0.922
Dipole moment (debyes) X Y Z Total
from point charges 5.638 10.434 -12.253 17.053
hybrid contribution 0.013 -0.906 0.371 0.979
sum 5.651 9.528 -11.882 16.245
Atomic orbital electron populations
1.21741 0.92575 1.03195 1.02963 1.20300 0.97599 0.85311 1.05106
1.24851 0.95974 0.96305 0.84972 1.84535 1.61469 1.17581 1.33396
1.73646 1.16524 0.98653 1.17483 1.26490 1.01309 0.99554 0.89415
1.22233 1.12408 0.95256 0.95835 1.16861 0.82072 0.80722 0.82873
1.90898 1.33219 1.35362 1.79397 1.48006 1.32076 1.43539 1.09647
1.22149 0.88252 0.92113 1.00700 1.21901 0.95989 1.01494 0.97705
1.21627 0.99677 0.99543 0.94528 1.21971 0.93601 0.97441 0.99716
0.91334 1.20895 0.92907 0.89820 0.90380 0.94752 1.22698 0.98941
0.97233 0.97629 1.23080 0.98845 0.99709 0.97287 1.21529 0.90034
0.91597 0.92468 1.44509 1.23913 1.10487 1.52830 1.18843 0.98407
0.87919 1.30205 0.91046 1.24754 0.95788 0.98512 1.00636 1.69896
1.05117 1.36380 1.44926 0.86288 0.76769 0.84470 0.78778 1.21378
1.21650 1.21132 1.21763 0.99354 1.01235 0.76826 0.90989 0.90871
0.92573 0.89252 0.87542 0.77966 0.89516 0.91356 0.91753 0.91241
0.91848 0.92030 0.92574 0.91819 0.92617 0.92471 0.96226 0.90189
0.93749 0.86545 0.92169
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.66 9.89 37.16 0.37 -1.29 16
2 C -0.05 -0.52 6.03 -27.88 -0.17 -0.69 16
3 C 0.04 0.55 6.80 -34.63 -0.24 0.32 16
4 O 0.09 1.14 11.06 18.67 0.21 1.35 16
5 N -0.36 -4.55 12.01 31.81 0.38 -4.16 16
6 C 0.01 0.16 10.07 -14.72 -0.15 0.02 16
7 C -0.25 -3.52 5.84 -102.89 -0.60 -4.12 16
8 C 0.59 10.17 7.57 -12.54 -0.09 10.08 16
9 O -0.51 -11.01 15.59 5.26 0.08 -10.93 16
10 N -0.60 -9.46 2.97 -174.05 -0.52 -9.98 16
11 C 0.09 1.04 5.78 -3.71 -0.02 1.01 16
12 C -0.13 -1.47 6.08 -26.61 -0.16 -1.63 16
13 C -0.12 -1.49 4.84 -26.69 -0.13 -1.62 16
14 C -0.11 -1.82 2.10 -90.50 -0.19 -2.01 16
15 H 0.07 1.35 8.13 -51.93 -0.42 0.93 16
16 C 0.17 3.24 3.01 -66.95 -0.20 3.04 16
17 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16
18 C -0.13 -2.08 5.17 -24.74 -0.13 -2.21 16
19 C -0.15 -2.76 7.11 -24.42 -0.17 -2.93 16
20 C 0.17 3.97 5.51 -2.53 -0.01 3.96 16
21 N -0.59 -14.31 2.26 -162.57 -0.37 -14.68 16
22 C -0.23 -6.10 9.87 -15.06 -0.15 -6.25 16
23 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16
24 C 0.00 0.00 5.48 -17.43 -0.10 -0.10 16
25 N -0.92 -26.72 10.39 55.49 0.58 -26.14 16
26 Si 0.91 22.44 29.55 -169.99 -5.02 17.42 16
27 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16
28 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16
29 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16
30 C 0.13 2.38 5.25 -3.71 -0.02 2.36 16
31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16
32 H 0.07 1.02 7.93 -51.93 -0.41 0.61 16
33 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16
34 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16
35 H 0.11 1.43 7.80 -51.93 -0.40 1.02 16
36 H 0.20 1.71 6.68 -52.49 -0.35 1.36 16
37 H 0.09 0.87 3.55 -51.93 -0.18 0.68 16
38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16
39 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16
40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16
41 H 0.06 0.76 6.84 -51.93 -0.36 0.41 16
42 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16
43 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16
44 H 0.06 0.99 5.46 -51.93 -0.28 0.71 16
45 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16
46 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16
47 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16
48 H 0.08 2.14 6.56 -51.93 -0.34 1.80 16
49 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16
50 H 0.12 2.81 6.50 -51.93 -0.34 2.47 16
51 H 0.06 1.08 6.17 -51.93 -0.32 0.76 16
LS Contribution 391.02 15.07 5.89 5.89
Total: -1.00 -31.57 391.02 -8.96 -40.53
By element:
Atomic # 1 Polarization: 10.80 SS G_CDS: -8.03 Total: 2.77 kcal
Atomic # 6 Polarization: 0.08 SS G_CDS: -2.16 Total: -2.08 kcal
Atomic # 7 Polarization: -55.03 SS G_CDS: 0.07 Total: -54.96 kcal
Atomic # 8 Polarization: -9.87 SS G_CDS: 0.29 Total: -9.58 kcal
Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal
Total LS contribution 5.89 Total: 5.89 kcal
Total: -31.57 -8.96 -40.53 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000963365780.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 95.110 kcal
(2) G-P(sol) polarization free energy of solvation -31.571 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.539 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.963 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.534 kcal
(6) G-S(sol) free energy of system = (1) + (5) 54.576 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.90 seconds