Wall clock time and date at job start Wed Apr 1 2020 05:39:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.50705 * 109.46942 * 2 1
4 4 O 1.33485 * 126.83167 * 270.03078 * 3 2 1
5 5 N 1.20659 * 113.15587 * 179.97438 * 4 3 2
6 6 C 1.30017 * 112.30331 * 359.71376 * 5 4 3
7 7 C 1.37358 * 126.82278 * 90.00015 * 3 2 1
8 8 C 1.47399 * 128.57158 * 0.02562 * 7 3 2
9 9 O 1.21617 * 119.99344 * 326.80865 * 8 7 3
10 10 N 1.34767 * 120.00647 * 146.80326 * 8 7 3
11 11 C 1.46931 * 120.63020 * 3.11360 * 10 8 7
12 12 C 1.53188 * 108.78032 * 233.63082 * 11 10 8
13 13 C 1.53037 * 109.31558 * 305.36463 * 12 11 10
14 14 C 1.53043 * 109.53373 * 61.36086 * 13 12 11
15 15 H 1.09006 * 109.52475 * 58.61066 * 14 13 12
16 16 C 1.53005 * 109.49578 * 178.68281 * 14 13 12
17 17 H 1.09001 * 109.87660 * 294.82338 * 16 14 13
18 18 C 1.54326 * 109.87821 * 55.99994 * 16 14 13
19 19 C 1.55449 * 102.96676 * 141.61084 * 18 16 14
20 20 C 1.54913 * 101.45024 * 324.51416 * 19 18 16
21 21 N 1.47029 * 109.88219 * 173.80361 * 16 14 13
22 22 C 1.36935 * 125.64277 * 61.66788 * 21 16 14
23 23 H 1.07997 * 120.00383 * 9.74741 * 22 21 16
24 24 C 1.38814 * 119.99613 * 189.73919 * 22 21 16
25 25 N 1.31618 * 119.99928 * 0.02562 * 24 22 21
26 26 Si 1.86800 * 119.99974 * 179.97438 * 24 22 21
27 27 H 1.48503 * 109.46925 * 60.00138 * 26 24 22
28 28 H 1.48494 * 109.47193 * 180.02562 * 26 24 22
29 29 H 1.48505 * 109.47103 * 300.00635 * 26 24 22
30 30 C 1.46926 * 120.63556 * 183.14223 * 10 8 7
31 31 H 1.09005 * 109.46968 * 179.97438 * 1 2 3
32 32 H 1.08995 * 109.47373 * 299.99339 * 1 2 3
33 33 H 1.08998 * 109.47401 * 59.99764 * 1 2 3
34 34 H 1.09000 * 109.46963 * 240.00889 * 2 1 3
35 35 H 1.08998 * 109.47401 * 120.00236 * 2 1 3
36 36 H 1.08001 * 127.33838 * 180.30038 * 6 5 4
37 37 H 1.09002 * 109.58343 * 353.42358 * 11 10 8
38 38 H 1.09001 * 109.58533 * 113.84347 * 11 10 8
39 39 H 1.09001 * 109.49642 * 65.31413 * 12 11 10
40 40 H 1.09005 * 109.49953 * 185.37795 * 12 11 10
41 41 H 1.08998 * 109.46223 * 301.34843 * 13 12 11
42 42 H 1.08993 * 109.46410 * 181.38257 * 13 12 11
43 43 H 1.09000 * 110.71858 * 259.96591 * 18 16 14
44 44 H 1.08998 * 110.72554 * 23.24638 * 18 16 14
45 45 H 1.09002 * 111.11837 * 206.46239 * 19 18 16
46 46 H 1.08995 * 111.01675 * 82.52617 * 19 18 16
47 47 H 1.08998 * 110.36532 * 278.11298 * 20 19 18
48 48 H 1.08997 * 110.36474 * 155.90060 * 20 19 18
49 49 H 0.97004 * 119.99998 * 180.02562 * 25 24 22
50 50 H 1.08996 * 109.58612 * 6.57750 * 30 10 8
51 51 H 1.09006 * 109.69924 * 246.22852 * 30 10 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4209 0.0000
4 8 2.2985 2.1755 -1.0684
5 7 2.6889 3.2810 -0.7831
6 6 2.7485 3.4668 0.5023
7 6 2.3067 2.1970 1.0995
8 6 2.1833 1.8464 2.5259
9 8 1.3046 1.0895 2.8921
10 7 3.0441 2.3644 3.4242
11 6 4.0679 3.3326 3.0079
12 6 5.4390 2.8302 3.4709
13 6 5.3991 2.5667 4.9779
14 6 4.3605 1.4843 5.2807
15 1 4.6156 0.5730 4.7397
16 6 4.3445 1.1982 6.7837
17 1 5.2981 0.7673 7.0891
18 6 4.0808 2.5035 7.5636
19 6 3.1558 2.0367 8.7224
20 6 2.3126 0.9426 8.0211
21 7 3.2506 0.2696 7.1044
22 6 3.1244 -1.0089 6.6303
23 1 3.9399 -1.4679 6.0912
24 6 1.9483 -1.7150 6.8429
25 7 0.9544 -1.1554 7.4997
26 14 1.7758 -3.4587 6.1956
27 1 2.8245 -4.3178 6.8019
28 1 0.4349 -3.9883 6.5512
29 1 1.9309 -3.4562 4.7187
30 6 2.9771 1.9714 4.8383
31 1 -0.3633 -1.0277 -0.0005
32 1 -0.3634 0.5137 0.8900
33 1 -0.3634 0.5138 -0.8899
34 1 1.8933 -0.5137 -0.8901
35 1 1.8934 -0.5138 0.8899
36 1 3.0585 4.3619 1.0211
37 1 4.0610 3.4275 1.9220
38 1 3.8611 4.3014 3.4626
39 1 5.6842 1.9067 2.9464
40 1 6.1954 3.5842 3.2528
41 1 5.1296 3.4847 5.5001
42 1 6.3805 2.2326 5.3142
43 1 5.0118 2.9136 7.9551
44 1 3.5715 3.2329 6.9338
45 1 2.5235 2.8524 9.0731
46 1 3.7380 1.6158 9.5420
47 1 1.4941 1.3951 7.4613
48 1 1.9247 0.2349 8.7537
49 1 0.1327 -1.6489 7.6485
50 1 2.2506 1.1681 4.9602
51 1 2.6802 2.8276 5.4440
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000963365780.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:39:19
Heat of formation + Delta-G solvation = 36.346892 kcal
Electronic energy + Delta-G solvation = -32862.758419 eV
Core-core repulsion = 28765.487759 eV
Total energy + Delta-G solvation = -4097.270661 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.98 seconds
Orbital eigenvalues (eV)
-46.01590 -41.35880 -39.73223 -37.84327 -35.75196 -35.17137 -34.52878 -33.66355
-32.31352 -31.36581 -31.09839 -28.46171 -27.13600 -26.48020 -25.21669 -24.93187
-24.12746 -22.77763 -22.36622 -21.72206 -20.40327 -19.70639 -18.94100 -18.74475
-18.44321 -17.72277 -17.35812 -16.79791 -16.24693 -16.04860 -15.80173 -15.62759
-15.55093 -15.36247 -14.88779 -14.61596 -14.35741 -14.27917 -13.98969 -13.89108
-13.67652 -13.61716 -13.13351 -12.97819 -12.90393 -12.86224 -12.74053 -12.66398
-12.54420 -12.13219 -12.01202 -11.98423 -11.85695 -11.75750 -11.47437 -11.41661
-11.36376 -11.19855 -11.08653 -10.95815 -10.62594 -10.55601 -9.59222 -8.75725
-7.80183 -5.14547 0.01408 0.69568 1.39480 1.44028 1.48280 1.60430
1.78630 2.13528 2.50096 3.13519 3.22975 3.37107 3.47502 3.65067
3.79987 3.88913 3.93381 4.03958 4.09929 4.15937 4.17269 4.20407
4.29002 4.32639 4.37261 4.40240 4.56900 4.62818 4.63852 4.71772
4.81849 4.85672 4.88054 4.92350 4.98176 5.00187 5.03326 5.09355
5.18535 5.23865 5.25201 5.31643 5.38640 5.51160 5.53545 5.60404
5.65283 5.73407 5.85896 6.30958 6.37448 7.01755 7.09293 7.16343
7.86668 8.50901 9.28354
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.010001 B = 0.004445 C = 0.003370
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2799.058206 B = 6297.835306 C = 8306.320280
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C -0.046 4.046
3 C 0.051 3.949
4 O 0.091 5.909
5 N -0.366 5.366
6 C 0.037 3.963
7 C -0.274 4.274
8 C 0.582 3.418
9 O -0.572 6.572
10 N -0.598 5.598
11 C 0.084 3.916
12 C -0.128 4.128
13 C -0.108 4.108
14 C -0.094 4.094
15 H 0.031 0.969
16 C 0.157 3.843
17 H 0.035 0.965
18 C -0.111 4.111
19 C -0.138 4.138
20 C 0.173 3.827
21 N -0.611 5.611
22 C -0.222 4.222
23 H 0.068 0.932
24 C -0.059 4.059
25 N -0.945 5.945
26 Si 0.960 3.040
27 H -0.274 1.274
28 H -0.295 1.295
29 H -0.288 1.288
30 C 0.143 3.857
31 H 0.083 0.917
32 H 0.037 0.963
33 H 0.076 0.924
34 H 0.124 0.876
35 H 0.080 0.920
36 H 0.239 0.761
37 H 0.104 0.896
38 H 0.099 0.901
39 H 0.047 0.953
40 H 0.112 0.888
41 H 0.086 0.914
42 H 0.074 0.926
43 H 0.096 0.904
44 H 0.076 0.924
45 H 0.080 0.920
46 H 0.062 0.938
47 H -0.015 1.015
48 H 0.038 0.962
49 H 0.242 0.758
50 H 0.049 0.951
51 H 0.068 0.932
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.052 13.380 -12.839 20.635
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.084 4.084
3 C -0.013 4.013
4 O 0.034 5.966
5 N -0.073 5.073
6 C -0.145 4.145
7 C -0.282 4.282
8 C 0.370 3.630
9 O -0.452 6.452
10 N -0.330 5.330
11 C -0.037 4.037
12 C -0.166 4.166
13 C -0.146 4.146
14 C -0.116 4.116
15 H 0.050 0.950
16 C 0.050 3.950
17 H 0.052 0.948
18 C -0.149 4.149
19 C -0.176 4.176
20 C 0.048 3.952
21 N -0.335 5.335
22 C -0.351 4.351
23 H 0.086 0.914
24 C -0.253 4.253
25 N -0.594 5.594
26 Si 0.789 3.211
27 H -0.200 1.200
28 H -0.221 1.221
29 H -0.215 1.215
30 C 0.021 3.979
31 H 0.102 0.898
32 H 0.057 0.943
33 H 0.095 0.905
34 H 0.142 0.858
35 H 0.098 0.902
36 H 0.255 0.745
37 H 0.122 0.878
38 H 0.117 0.883
39 H 0.066 0.934
40 H 0.130 0.870
41 H 0.104 0.896
42 H 0.093 0.907
43 H 0.115 0.885
44 H 0.095 0.905
45 H 0.098 0.902
46 H 0.081 0.919
47 H 0.003 0.997
48 H 0.057 0.943
49 H 0.052 0.948
50 H 0.067 0.933
51 H 0.086 0.914
Dipole moment (debyes) X Y Z Total
from point charges 8.716 13.552 -13.717 21.161
hybrid contribution -0.887 -1.854 0.795 2.203
sum 7.829 11.698 -12.922 19.108
Atomic orbital electron populations
1.21700 0.92430 1.03760 1.02147 1.20349 0.97659 0.84952 1.05468
1.25051 0.94621 0.96620 0.84976 1.84549 1.61597 1.17626 1.32875
1.73643 1.17200 0.98646 1.17852 1.26912 0.99525 0.99316 0.88779
1.22005 1.14754 0.97246 0.94179 1.17328 0.81418 0.79897 0.84312
1.90871 1.35738 1.38070 1.80563 1.48098 1.32690 1.43894 1.08291
1.22559 0.86990 0.92009 1.02139 1.21909 0.96690 1.02101 0.95887
1.21592 0.98282 0.98310 0.96367 1.21778 0.94430 0.97826 0.97564
0.94992 1.21202 0.91004 0.90495 0.92258 0.94765 1.22678 1.00342
0.95614 0.96241 1.22941 0.98651 0.98343 0.97668 1.21274 0.90317
0.92172 0.91425 1.44719 1.25109 1.10524 1.53137 1.19080 0.97959
0.89434 1.28654 0.91365 1.25443 0.95990 1.01937 1.01892 1.70119
1.05225 1.37291 1.46749 0.85428 0.76626 0.81122 0.77909 1.19978
1.22111 1.21456 1.21323 0.98398 0.99281 0.78944 0.89836 0.94333
0.90548 0.85754 0.90184 0.74464 0.87804 0.88267 0.93389 0.87005
0.89581 0.90719 0.88505 0.90512 0.90156 0.91907 0.99663 0.94312
0.94816 0.93253 0.91361
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.31 9.89 71.98 0.71 -2.60 16
2 C -0.05 -1.08 6.03 29.85 0.18 -0.90 16
3 C 0.05 1.30 6.80 25.48 0.17 1.48 16
4 O 0.09 2.13 11.06 77.05 0.85 2.98 16
5 N -0.37 -8.35 12.01 -54.18 -0.65 -9.00 16
6 C 0.04 0.75 10.07 87.29 0.88 1.63 16
7 C -0.27 -7.59 5.84 -18.74 -0.11 -7.70 16
8 C 0.58 20.89 7.57 86.66 0.66 21.55 16
9 O -0.57 -26.77 15.59 -4.08 -0.06 -26.83 16
10 N -0.60 -18.71 2.97 -822.81 -2.45 -21.15 16
11 C 0.08 1.60 5.78 86.36 0.50 2.10 16
12 C -0.13 -2.29 6.08 30.67 0.19 -2.11 16
13 C -0.11 -2.36 4.84 30.62 0.15 -2.21 16
14 C -0.09 -3.23 2.10 -10.71 -0.02 -3.25 16
15 H 0.03 1.30 8.13 -2.38 -0.02 1.28 16
16 C 0.16 5.96 3.01 45.34 0.14 6.09 16
17 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16
18 C -0.11 -3.30 5.17 31.89 0.16 -3.13 16
19 C -0.14 -4.86 7.11 32.09 0.23 -4.63 16
20 C 0.17 8.57 5.51 86.86 0.48 9.05 16
21 N -0.61 -30.74 2.26 -668.25 -1.51 -32.25 16
22 C -0.22 -12.67 9.87 84.03 0.83 -11.84 16
23 H 0.07 3.84 7.83 -2.91 -0.02 3.81 16
24 C -0.06 -3.53 5.48 84.86 0.46 -3.06 16
25 N -0.94 -59.04 10.39 21.65 0.22 -58.82 16
26 Si 0.96 48.62 29.55 68.60 2.03 50.65 16
27 H -0.27 -13.14 7.11 99.48 0.71 -12.43 16
28 H -0.29 -15.02 7.11 99.48 0.71 -14.32 16
29 H -0.29 -14.54 7.11 99.48 0.71 -13.83 16
30 C 0.14 5.40 5.25 86.36 0.45 5.86 16
31 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16
32 H 0.04 1.15 7.93 -2.39 -0.02 1.13 16
33 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16
34 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16
35 H 0.08 2.32 7.80 -2.39 -0.02 2.30 16
36 H 0.24 2.88 6.68 -2.91 -0.02 2.86 16
37 H 0.10 1.64 3.55 -2.39 -0.01 1.64 16
38 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16
39 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16
40 H 0.11 1.20 8.14 -2.38 -0.02 1.18 16
41 H 0.09 1.56 6.84 -2.39 -0.02 1.55 16
42 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16
43 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16
44 H 0.08 2.10 5.46 -2.39 -0.01 2.09 16
45 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16
46 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16
47 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16
48 H 0.04 2.21 6.56 -2.39 -0.02 2.19 16
49 H 0.24 14.97 8.31 -92.71 -0.77 14.20 16
50 H 0.05 2.57 6.50 -2.39 -0.02 2.56 16
51 H 0.07 2.43 6.17 -2.38 -0.01 2.41 16
Total: -1.00 -78.74 391.02 5.42 -73.32
By element:
Atomic # 1 Polarization: 13.84 SS G_CDS: 0.93 Total: 14.77 kcal
Atomic # 6 Polarization: 0.27 SS G_CDS: 6.06 Total: 6.33 kcal
Atomic # 7 Polarization: -116.84 SS G_CDS: -4.38 Total: -121.22 kcal
Atomic # 8 Polarization: -24.64 SS G_CDS: 0.79 Total: -23.85 kcal
Atomic # 14 Polarization: 48.62 SS G_CDS: 2.03 Total: 50.65 kcal
Total: -78.74 5.42 -73.32 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000963365780.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 109.666 kcal
(2) G-P(sol) polarization free energy of solvation -78.743 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.922 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.425 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.319 kcal
(6) G-S(sol) free energy of system = (1) + (5) 36.347 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.98 seconds