Wall clock time and date at job start Wed Apr 1 2020 05:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50697 * 109.46947 * 2 1 4 4 C 1.35318 * 126.66259 * 90.28967 * 3 2 1 5 5 C 1.42277 * 103.92308 * 180.13075 * 4 3 2 6 6 C 1.48325 * 126.94198 * 179.91114 * 5 4 3 7 7 O 1.21495 * 119.99961 * 353.47729 * 6 5 4 8 8 N 1.34772 * 120.00302 * 173.47918 * 6 5 4 9 9 C 1.46931 * 120.62996 * 353.15980 * 8 6 5 10 10 C 1.53190 * 108.77815 * 233.63038 * 9 8 6 11 11 C 1.53041 * 109.31200 * 305.36984 * 10 9 8 12 12 C 1.53038 * 109.54099 * 61.36271 * 11 10 9 13 13 H 1.08998 * 109.49437 * 58.58812 * 12 11 10 14 14 C 1.52999 * 109.49705 * 178.68173 * 12 11 10 15 15 H 1.09004 * 109.87531 * 306.15413 * 14 12 11 16 16 C 1.54320 * 109.88331 * 184.97324 * 14 12 11 17 17 C 1.55159 * 102.94291 * 218.39007 * 16 14 12 18 18 C 1.54906 * 101.57911 * 35.50421 * 17 16 14 19 19 N 1.47027 * 109.88187 * 67.16382 * 14 12 11 20 20 C 1.36935 * 125.65014 * 298.32395 * 19 14 12 21 21 H 1.07998 * 119.99888 * 141.01717 * 20 19 14 22 22 C 1.38813 * 120.00027 * 321.01713 * 20 19 14 23 23 N 1.31617 * 119.99998 * 169.32249 * 22 20 19 24 24 Si 1.86796 * 119.99891 * 349.32083 * 22 20 19 25 25 H 1.48508 * 109.47133 * 87.72529 * 24 22 20 26 26 H 1.48500 * 109.47149 * 207.72682 * 24 22 20 27 27 H 1.48499 * 109.47310 * 327.72862 * 24 22 20 28 28 C 1.46925 * 120.63292 * 173.18511 * 8 6 5 29 29 N 1.30986 * 106.12055 * 359.64447 * 5 4 3 30 30 O 1.20911 * 111.43752 * 0.22916 * 29 5 4 31 31 H 1.09000 * 109.47230 * 59.99829 * 1 2 3 32 32 H 1.09007 * 109.46632 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47042 * 299.99022 * 1 2 3 34 34 H 1.09004 * 109.47076 * 240.00308 * 2 1 3 35 35 H 1.08992 * 109.47412 * 120.00447 * 2 1 3 36 36 H 1.08001 * 128.04085 * 0.02562 * 4 3 2 37 37 H 1.09000 * 109.58341 * 113.84132 * 9 8 6 38 38 H 1.09000 * 109.58470 * 353.42135 * 9 8 6 39 39 H 1.08993 * 109.49918 * 185.40959 * 10 9 8 40 40 H 1.09004 * 109.49305 * 65.31722 * 10 9 8 41 41 H 1.09002 * 109.45552 * 181.38196 * 11 10 9 42 42 H 1.09004 * 109.45919 * 301.33868 * 11 10 9 43 43 H 1.09003 * 110.72066 * 336.75713 * 16 14 12 44 44 H 1.08999 * 110.71962 * 100.02993 * 16 14 12 45 45 H 1.08993 * 111.00673 * 277.42652 * 17 16 14 46 46 H 1.09006 * 111.00051 * 153.57520 * 17 16 14 47 47 H 1.09005 * 110.36691 * 204.14848 * 18 17 16 48 48 H 1.08997 * 110.46132 * 81.87984 * 18 17 16 49 49 H 0.97002 * 119.99837 * 179.97438 * 23 22 20 50 50 H 1.08998 * 109.58842 * 246.15752 * 28 8 6 51 51 H 1.09002 * 109.58556 * 6.44127 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3067 2.1808 1.0855 5 6 2.7385 3.4199 0.5355 6 6 3.1658 4.6268 1.2843 7 8 3.0576 4.6612 2.4939 8 7 3.6741 5.6854 0.6229 9 6 3.9506 5.6054 -0.8180 10 6 5.4061 6.0147 -1.0643 11 6 5.6541 7.3953 -0.4523 12 6 5.4183 7.3353 1.0586 13 1 6.0842 6.5948 1.5016 14 6 5.6983 8.7078 1.6741 15 1 6.6957 9.0444 1.3909 16 6 5.5847 8.6270 3.2109 17 6 4.9082 9.9734 3.5807 18 6 3.9493 10.1793 2.3816 19 7 4.6939 9.6772 1.2124 20 6 4.4850 10.0520 -0.0879 21 1 3.4798 10.2118 -0.4490 22 6 5.5653 10.2265 -0.9420 23 7 5.3649 10.3789 -2.2339 24 14 7.3033 10.2452 -0.2578 25 1 7.8281 8.8570 -0.2017 26 1 8.1725 11.0679 -1.1369 27 1 7.2910 10.8253 1.1091 28 6 3.9629 6.9411 1.3290 29 7 2.6879 3.2776 -0.7656 30 8 2.2986 2.1755 -1.0749 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0278 -0.0005 33 1 -0.3633 0.5137 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 2.2171 1.9102 2.1272 37 1 3.2851 6.2808 -1.3557 38 1 3.7948 4.5835 -1.1638 39 1 5.5969 6.0525 -2.1367 40 1 6.0721 5.2865 -0.6012 41 1 6.6825 7.6996 -0.6475 42 1 4.9709 8.1182 -0.8981 43 1 4.9577 7.7860 3.5076 44 1 6.5718 8.5533 3.6673 45 1 5.6422 10.7772 3.6365 46 1 4.3529 9.8881 4.5148 47 1 3.7179 11.2373 2.2582 48 1 3.0335 9.6055 2.5232 49 1 6.1197 10.5012 -2.8307 50 1 3.2984 7.7253 0.9663 51 1 3.8129 6.8011 2.3995 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963391333.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:29 Heat of formation + Delta-G solvation = 51.401708 kcal Electronic energy + Delta-G solvation = -32611.836327 eV Core-core repulsion = 28515.218493 eV Total energy + Delta-G solvation = -4096.617835 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -46.21303 -41.54942 -40.02394 -37.90046 -35.84909 -35.21253 -34.81835 -33.81192 -32.47059 -31.77453 -31.16819 -28.87343 -27.30348 -26.35325 -25.14633 -24.93870 -24.13795 -23.32152 -22.00926 -21.68992 -21.08144 -20.07216 -18.96230 -18.59977 -18.49687 -17.94220 -17.70661 -17.09307 -16.37674 -16.25185 -15.64744 -15.57265 -15.34171 -15.23469 -15.07620 -14.98749 -14.71200 -14.41887 -14.30295 -14.15589 -13.66286 -13.57534 -13.50355 -13.35089 -13.18314 -12.87209 -12.63326 -12.49290 -12.35844 -12.19214 -12.13005 -12.01129 -11.86587 -11.81139 -11.71219 -11.58062 -11.53895 -11.34177 -11.01939 -10.86951 -10.45917 -10.37339 -9.77607 -8.65880 -8.15621 -5.55989 -0.02982 0.63528 1.27458 1.38175 1.46080 1.62378 1.92812 2.01930 2.40682 2.74277 3.12846 3.32173 3.36328 3.66081 3.82655 3.85420 3.92334 4.01336 4.06305 4.07127 4.14854 4.16172 4.21006 4.36805 4.37428 4.43836 4.49293 4.59127 4.62761 4.68510 4.72192 4.80272 4.85597 4.95784 4.98279 4.99172 5.00401 5.08274 5.09788 5.12365 5.16352 5.19029 5.21488 5.32502 5.41807 5.42890 5.47404 5.77934 6.00026 6.16939 6.19999 6.72283 6.87810 7.03783 7.57260 8.26351 9.03115 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017514 B = 0.003208 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.301368 B = 8726.227288 C = 9621.150128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.039 4.039 3 C -0.010 4.010 4 C -0.191 4.191 5 C -0.043 4.043 6 C 0.589 3.411 7 O -0.558 6.558 8 N -0.591 5.591 9 C 0.098 3.902 10 C -0.122 4.122 11 C -0.144 4.144 12 C -0.090 4.090 13 H 0.063 0.937 14 C 0.141 3.859 15 H 0.021 0.979 16 C -0.125 4.125 17 C -0.123 4.123 18 C 0.122 3.878 19 N -0.615 5.615 20 C -0.227 4.227 21 H 0.044 0.956 22 C 0.009 3.991 23 N -0.945 5.945 24 Si 0.933 3.067 25 H -0.258 1.258 26 H -0.320 1.320 27 H -0.271 1.271 28 C 0.141 3.859 29 N -0.345 5.345 30 O 0.122 5.878 31 H 0.052 0.948 32 H 0.091 0.909 33 H 0.054 0.946 34 H 0.110 0.890 35 H 0.122 0.878 36 H 0.194 0.806 37 H 0.057 0.943 38 H 0.124 0.876 39 H 0.077 0.923 40 H 0.062 0.938 41 H 0.043 0.957 42 H 0.096 0.904 43 H 0.080 0.920 44 H 0.083 0.917 45 H 0.063 0.937 46 H 0.098 0.902 47 H 0.041 0.959 48 H 0.031 0.969 49 H 0.262 0.738 50 H 0.065 0.935 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.433 -22.026 7.101 23.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.077 4.077 3 C -0.073 4.073 4 C -0.213 4.213 5 C -0.199 4.199 6 C 0.376 3.624 7 O -0.436 6.436 8 N -0.322 5.322 9 C -0.025 4.025 10 C -0.160 4.160 11 C -0.181 4.181 12 C -0.111 4.111 13 H 0.081 0.919 14 C 0.035 3.965 15 H 0.038 0.962 16 C -0.163 4.163 17 C -0.161 4.161 18 C -0.003 4.003 19 N -0.341 5.341 20 C -0.356 4.356 21 H 0.062 0.938 22 C -0.188 4.188 23 N -0.589 5.589 24 Si 0.765 3.235 25 H -0.185 1.185 26 H -0.250 1.250 27 H -0.197 1.197 28 C 0.019 3.981 29 N -0.048 5.048 30 O 0.047 5.953 31 H 0.071 0.929 32 H 0.110 0.890 33 H 0.073 0.927 34 H 0.128 0.872 35 H 0.141 0.859 36 H 0.211 0.789 37 H 0.075 0.925 38 H 0.141 0.859 39 H 0.096 0.904 40 H 0.081 0.919 41 H 0.061 0.939 42 H 0.114 0.886 43 H 0.099 0.901 44 H 0.101 0.899 45 H 0.081 0.919 46 H 0.116 0.884 47 H 0.059 0.941 48 H 0.049 0.951 49 H 0.071 0.929 50 H 0.083 0.917 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.155 -21.056 6.514 22.635 hybrid contribution 0.979 0.639 0.268 1.199 sum -4.177 -20.417 6.781 21.916 Atomic orbital electron populations 1.21830 0.92948 1.03985 1.02271 1.20451 0.96845 0.83341 1.07087 1.25245 0.99945 0.98102 0.83996 1.22637 1.05427 0.90494 1.02779 1.23430 1.07757 0.98137 0.90613 1.17315 0.77575 0.81437 0.86069 1.90719 1.57536 1.81768 1.13617 1.48142 1.60710 1.12693 1.10661 1.22336 0.96557 1.04504 0.79085 1.21838 0.95627 0.97153 1.01421 1.22188 1.02298 0.97903 0.95701 1.21672 0.95580 0.97407 0.96478 0.91880 1.21394 0.92284 0.88503 0.94365 0.96211 1.22661 1.01899 0.98716 0.92985 1.22708 0.98620 0.96648 0.98130 1.21890 0.94446 0.97171 0.86759 1.44751 1.41406 1.45573 1.02382 1.18128 0.91934 1.40746 0.84805 0.93800 1.25750 1.00351 0.97487 0.95243 1.69869 1.31707 1.54123 1.03233 0.86365 0.82336 0.77644 0.77179 1.18495 1.25009 1.19728 1.21506 0.96462 0.83103 0.96982 1.74060 1.15169 1.00180 1.15365 1.84772 1.59015 1.17003 1.34461 0.92872 0.89007 0.92660 0.87164 0.85940 0.78859 0.92456 0.85895 0.90436 0.91935 0.93875 0.88563 0.90129 0.89864 0.91865 0.88372 0.94052 0.95099 0.92904 0.91718 0.89629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.89 71.98 0.71 -0.29 16 2 C -0.04 -0.26 6.50 29.85 0.19 -0.06 16 3 C -0.01 -0.15 6.73 25.01 0.17 0.01 16 4 C -0.19 -4.05 10.93 22.60 0.25 -3.80 16 5 C -0.04 -1.25 6.88 42.96 0.30 -0.96 16 6 C 0.59 20.98 7.71 86.93 0.67 21.65 16 7 O -0.56 -21.82 16.38 -3.70 -0.06 -21.88 16 8 N -0.59 -21.79 2.97 -821.77 -2.44 -24.23 16 9 C 0.10 3.44 6.13 86.36 0.53 3.97 16 10 C -0.12 -4.43 6.08 30.67 0.19 -4.24 16 11 C -0.14 -6.22 3.57 30.62 0.11 -6.11 16 12 C -0.09 -3.60 2.12 -10.72 -0.02 -3.62 16 13 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 14 C 0.14 5.77 2.13 45.34 0.10 5.87 16 15 H 0.02 0.92 3.28 -2.38 -0.01 0.91 16 16 C -0.12 -4.04 6.31 31.78 0.20 -3.83 16 17 C -0.12 -3.80 7.09 31.99 0.23 -3.57 16 18 C 0.12 4.68 7.23 86.85 0.63 5.31 16 19 N -0.61 -28.18 1.58 -668.26 -1.06 -29.24 16 20 C -0.23 -12.38 8.37 84.03 0.70 -11.67 16 21 H 0.04 2.70 8.06 -2.91 -0.02 2.67 16 22 C 0.01 0.50 3.55 84.86 0.30 0.80 16 23 N -0.94 -56.59 13.97 21.65 0.30 -56.29 16 24 Si 0.93 46.25 22.85 68.60 1.57 47.82 16 25 H -0.26 -12.08 5.34 99.48 0.53 -11.55 16 26 H -0.32 -16.43 7.11 99.48 0.71 -15.72 16 27 H -0.27 -13.21 6.90 99.48 0.69 -12.53 16 28 C 0.14 5.50 5.29 86.36 0.46 5.96 16 29 N -0.35 -9.62 8.64 -49.51 -0.43 -10.05 16 30 O 0.12 2.65 11.18 71.94 0.80 3.46 16 31 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.09 0.25 8.14 -2.38 -0.02 0.23 16 33 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 35 H 0.12 0.32 8.14 -2.39 -0.02 0.30 16 36 H 0.19 3.37 8.06 -2.91 -0.02 3.35 16 37 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 38 H 0.12 3.96 4.19 -12.91 -0.05 3.91 16 39 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 40 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 41 H 0.04 1.97 4.83 -2.39 -0.01 1.96 16 42 H 0.10 4.91 4.48 -2.39 -0.01 4.90 16 43 H 0.08 2.47 6.17 -2.39 -0.01 2.46 16 44 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 45 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 46 H 0.10 2.40 8.14 -2.38 -0.02 2.38 16 47 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 48 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 49 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 50 H 0.06 2.86 7.12 -2.39 -0.02 2.84 16 51 H 0.09 3.26 5.42 -2.39 -0.01 3.25 16 Total: -1.00 -68.82 377.32 5.09 -63.73 By element: Atomic # 1 Polarization: 20.57 SS G_CDS: 0.71 Total: 21.28 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: 5.70 Total: 5.41 kcal Atomic # 7 Polarization: -116.18 SS G_CDS: -3.63 Total: -119.81 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: 0.74 Total: -18.42 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 1.57 Total: 47.82 kcal Total: -68.82 5.09 -63.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963391333.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.131 kcal (2) G-P(sol) polarization free energy of solvation -68.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds