Wall clock time and date at job start Wed Apr 1 2020 05:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50699 * 109.47121 * 2 1 4 4 C 1.35315 * 126.66518 * 90.30661 * 3 2 1 5 5 C 1.42277 * 103.91898 * 180.11115 * 4 3 2 6 6 C 1.48330 * 126.93349 * 179.91089 * 5 4 3 7 7 O 1.21487 * 120.00342 * 352.84592 * 6 5 4 8 8 N 1.34781 * 119.99477 * 173.11836 * 6 5 4 9 9 C 1.46923 * 120.63015 * 3.54135 * 8 6 5 10 10 C 1.53192 * 108.77301 * 233.58564 * 9 8 6 11 11 C 1.53039 * 109.31175 * 305.36392 * 10 9 8 12 12 C 1.53043 * 109.53721 * 61.36871 * 11 10 9 13 13 H 1.08994 * 109.50050 * 58.62110 * 12 11 10 14 14 C 1.53005 * 109.49637 * 178.68325 * 12 11 10 15 15 H 1.09003 * 109.87344 * 298.25137 * 14 12 11 16 16 C 1.54319 * 109.88274 * 59.26443 * 14 12 11 17 17 C 1.55402 * 102.82816 * 141.51793 * 16 14 12 18 18 C 1.54910 * 101.66373 * 324.66181 * 17 16 14 19 19 N 1.47016 * 109.87999 * 177.23256 * 14 12 11 20 20 C 1.36939 * 125.64944 * 61.67874 * 19 14 12 21 21 H 1.08000 * 120.00138 * 16.93467 * 20 19 14 22 22 C 1.38816 * 120.00106 * 196.93055 * 20 19 14 23 23 N 1.31612 * 120.00020 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 119.99948 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47129 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.47060 * 119.99706 * 24 22 20 27 27 H 1.48497 * 109.47408 * 239.99769 * 24 22 20 28 28 C 1.46925 * 120.63043 * 183.25914 * 8 6 5 29 29 N 1.30982 * 106.12225 * 359.64898 * 5 4 3 30 30 O 1.20906 * 111.43896 * 0.22488 * 29 5 4 31 31 H 1.08997 * 109.47338 * 60.00149 * 1 2 3 32 32 H 1.09007 * 109.47328 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47477 * 299.99862 * 1 2 3 34 34 H 1.08995 * 109.47141 * 239.99445 * 2 1 3 35 35 H 1.09005 * 109.46817 * 120.00204 * 2 1 3 36 36 H 1.07997 * 128.03990 * 0.02562 * 4 3 2 37 37 H 1.08997 * 109.58660 * 353.36765 * 9 8 6 38 38 H 1.08992 * 109.58738 * 113.79871 * 9 8 6 39 39 H 1.09001 * 109.50356 * 65.31721 * 10 9 8 40 40 H 1.09001 * 109.49823 * 185.38397 * 10 9 8 41 41 H 1.09005 * 109.46009 * 181.38871 * 11 10 9 42 42 H 1.08997 * 109.46120 * 301.34573 * 11 10 9 43 43 H 1.09001 * 110.72571 * 259.97221 * 16 14 12 44 44 H 1.08997 * 110.72381 * 23.24683 * 16 14 12 45 45 H 1.09008 * 111.03735 * 206.52954 * 17 16 14 46 46 H 1.08997 * 110.89421 * 82.73582 * 17 16 14 47 47 H 1.09001 * 110.36513 * 278.08107 * 18 17 16 48 48 H 1.09003 * 110.45772 * 155.81007 * 18 17 16 49 49 H 0.97000 * 120.00476 * 179.97438 * 23 22 20 50 50 H 1.08991 * 109.58698 * 246.20610 * 28 8 6 51 51 H 1.09009 * 109.58431 * 6.63021 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3072 2.1807 1.0854 5 6 2.7392 3.4196 0.5353 6 6 3.1670 4.6265 1.2841 7 8 3.0483 4.6654 2.4926 8 7 3.6823 5.6820 0.6232 9 6 3.7552 5.6835 -0.8442 10 6 5.1974 5.9821 -1.2659 11 6 5.6556 7.2880 -0.6125 12 6 5.6187 7.1388 0.9102 13 1 6.2642 6.3136 1.2107 14 6 6.1082 8.4336 1.5621 15 1 7.1404 8.6279 1.2708 16 6 5.2101 9.6114 1.1291 17 6 5.0983 10.4561 2.4287 18 6 5.0825 9.3546 3.5178 19 7 6.0138 8.3234 3.0251 20 6 6.6812 7.4142 3.8017 21 1 7.5350 6.8868 3.4028 22 6 6.2602 7.1703 5.1019 23 7 5.2200 7.8134 5.5883 24 14 7.1701 5.9295 6.1609 25 1 8.2956 5.3482 5.3860 26 1 7.7010 6.6067 7.3713 27 1 6.2377 4.8477 6.5678 28 6 4.1762 6.8557 1.3562 29 7 2.6884 3.2774 -0.7658 30 8 2.2987 2.1754 -1.0749 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5139 0.8900 36 1 2.2178 1.9101 2.1271 37 1 3.4578 4.7068 -1.2258 38 1 3.0917 6.4511 -1.2422 39 1 5.8465 5.1674 -0.9450 40 1 5.2463 6.0807 -2.3503 41 1 6.6731 7.5156 -0.9305 42 1 4.9913 8.0977 -0.9143 43 1 5.6840 10.1854 0.3328 44 1 4.2290 9.2537 0.8166 45 1 4.1731 11.0324 2.4424 46 1 5.9643 11.1077 2.5445 47 1 4.0798 8.9406 3.6240 48 1 5.4295 9.7554 4.4701 49 1 4.9256 7.6428 6.4967 50 1 3.5463 7.7169 1.1340 51 1 4.1566 6.6526 2.4271 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963391334.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:32 Heat of formation + Delta-G solvation = 38.229131 kcal Electronic energy + Delta-G solvation = -32279.299130 eV Core-core repulsion = 28182.110090 eV Total energy + Delta-G solvation = -4097.189040 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -46.24211 -41.45546 -39.80972 -37.93310 -35.88921 -35.31515 -34.60628 -33.76597 -32.36366 -31.25930 -31.11461 -28.54354 -27.23392 -26.50294 -25.13100 -25.00640 -24.02309 -23.32068 -22.35896 -21.77822 -20.46742 -19.77532 -18.94652 -18.69698 -18.56668 -17.91240 -17.35827 -16.81433 -16.31225 -16.06689 -15.75076 -15.65498 -15.57473 -15.40589 -15.04021 -14.55168 -14.46644 -14.33762 -14.17751 -14.00917 -13.74159 -13.53415 -13.24256 -13.09826 -12.94498 -12.88554 -12.81308 -12.68847 -12.46618 -12.05380 -11.99323 -11.92121 -11.84919 -11.63581 -11.63338 -11.59242 -11.41433 -11.31112 -11.17238 -11.04383 -10.66142 -10.51846 -9.74227 -8.74241 -7.88326 -5.22237 -0.06701 0.58916 1.35464 1.39576 1.46875 1.60745 1.92973 1.95774 2.46025 2.69652 3.31586 3.34506 3.60057 3.72663 3.84975 3.88362 3.93645 4.04251 4.10319 4.14242 4.15598 4.27285 4.28653 4.34051 4.35474 4.42013 4.55747 4.65135 4.72630 4.79909 4.80027 4.89519 4.92273 4.93464 5.01285 5.05016 5.06161 5.09382 5.14597 5.20271 5.25337 5.31487 5.39701 5.45114 5.48184 5.54102 5.59872 5.66463 5.80122 6.18029 6.26119 6.78249 7.00055 7.12010 7.81409 8.48446 9.23756 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011244 B = 0.003562 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2489.660858 B = 7859.402907 C = 9481.557927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.040 4.040 3 C 0.000 4.000 4 C -0.204 4.204 5 C -0.036 4.036 6 C 0.575 3.425 7 O -0.569 6.569 8 N -0.593 5.593 9 C 0.072 3.928 10 C -0.124 4.124 11 C -0.107 4.107 12 C -0.093 4.093 13 H 0.032 0.968 14 C 0.158 3.842 15 H 0.039 0.961 16 C -0.114 4.114 17 C -0.136 4.136 18 C 0.178 3.822 19 N -0.610 5.610 20 C -0.227 4.227 21 H 0.068 0.932 22 C -0.057 4.057 23 N -0.941 5.941 24 Si 0.959 3.041 25 H -0.267 1.267 26 H -0.285 1.285 27 H -0.302 1.302 28 C 0.138 3.862 29 N -0.332 5.332 30 O 0.126 5.874 31 H 0.059 0.941 32 H 0.092 0.908 33 H 0.050 0.950 34 H 0.116 0.884 35 H 0.116 0.884 36 H 0.180 0.820 37 H 0.127 0.873 38 H 0.085 0.915 39 H 0.046 0.954 40 H 0.110 0.890 41 H 0.079 0.921 42 H 0.085 0.915 43 H 0.100 0.900 44 H 0.073 0.927 45 H 0.080 0.920 46 H 0.066 0.934 47 H -0.011 1.011 48 H 0.025 0.975 49 H 0.243 0.757 50 H 0.073 0.927 51 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.703 -11.239 -20.879 24.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.078 4.078 3 C -0.063 4.063 4 C -0.227 4.227 5 C -0.193 4.193 6 C 0.362 3.638 7 O -0.447 6.447 8 N -0.324 5.324 9 C -0.050 4.050 10 C -0.162 4.162 11 C -0.145 4.145 12 C -0.115 4.115 13 H 0.050 0.950 14 C 0.051 3.949 15 H 0.057 0.943 16 C -0.151 4.151 17 C -0.174 4.174 18 C 0.053 3.947 19 N -0.334 5.334 20 C -0.357 4.357 21 H 0.086 0.914 22 C -0.251 4.251 23 N -0.589 5.589 24 Si 0.789 3.211 25 H -0.191 1.191 26 H -0.212 1.212 27 H -0.230 1.230 28 C 0.016 3.984 29 N -0.035 5.035 30 O 0.053 5.947 31 H 0.078 0.922 32 H 0.111 0.889 33 H 0.069 0.931 34 H 0.135 0.865 35 H 0.134 0.866 36 H 0.198 0.802 37 H 0.144 0.856 38 H 0.103 0.897 39 H 0.065 0.935 40 H 0.129 0.871 41 H 0.097 0.903 42 H 0.103 0.897 43 H 0.118 0.882 44 H 0.091 0.909 45 H 0.099 0.901 46 H 0.085 0.915 47 H 0.007 0.993 48 H 0.043 0.957 49 H 0.053 0.947 50 H 0.091 0.909 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.446 -10.409 -21.032 24.620 hybrid contribution 0.360 -0.790 2.551 2.695 sum -7.087 -11.198 -18.481 22.742 Atomic orbital electron populations 1.21827 0.92725 1.04064 1.02335 1.20469 0.97029 0.83213 1.07088 1.25117 0.99587 0.97935 0.83675 1.22608 1.06016 0.91343 1.02697 1.23324 1.07454 0.97686 0.90834 1.17605 0.78048 0.82176 0.86001 1.90843 1.56799 1.81822 1.15274 1.48232 1.58757 1.16373 1.09069 1.22837 0.98934 1.06276 0.76920 1.21872 0.94539 0.97564 1.02191 1.21598 1.02880 0.98100 0.91907 1.21851 0.94025 0.98889 0.96717 0.94959 1.21204 0.97088 0.93207 0.83384 0.94296 1.22695 0.99699 0.95340 0.97372 1.22923 1.01718 0.97124 0.95658 1.21146 0.91136 0.87580 0.94808 1.44698 1.51255 1.36103 1.01340 1.19133 1.07042 1.15117 0.94418 0.91430 1.25585 0.98505 1.01321 0.99680 1.70119 1.28061 1.45259 1.15459 0.85285 0.77732 0.78975 0.79125 1.19127 1.21219 1.22983 1.21564 0.95064 0.85650 0.96077 1.73777 1.15425 1.00060 1.14204 1.84740 1.58891 1.17042 1.34070 0.92233 0.88938 0.93121 0.86535 0.86599 0.80223 0.85612 0.89679 0.93516 0.87140 0.90273 0.89679 0.88199 0.90898 0.90119 0.91492 0.99252 0.95666 0.94733 0.90920 0.93175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.89 71.98 0.71 -0.46 16 2 C -0.04 -0.33 6.50 29.85 0.19 -0.14 16 3 C 0.00 0.01 6.73 25.01 0.17 0.17 16 4 C -0.20 -5.28 10.93 22.60 0.25 -5.04 16 5 C -0.04 -1.17 6.94 42.96 0.30 -0.87 16 6 C 0.58 23.96 7.72 86.93 0.67 24.63 16 7 O -0.57 -29.67 16.38 -3.67 -0.06 -29.73 16 8 N -0.59 -22.12 2.97 -820.96 -2.43 -24.56 16 9 C 0.07 1.92 6.31 86.36 0.55 2.47 16 10 C -0.12 -2.90 6.08 30.67 0.19 -2.71 16 11 C -0.11 -2.75 4.89 30.62 0.15 -2.60 16 12 C -0.09 -3.52 2.12 -10.57 -0.02 -3.54 16 13 H 0.03 1.44 8.06 -2.39 -0.02 1.42 16 14 C 0.16 6.32 2.95 45.34 0.13 6.46 16 15 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 16 C -0.11 -3.60 5.22 31.87 0.17 -3.43 16 17 C -0.14 -4.96 7.09 32.07 0.23 -4.74 16 18 C 0.18 9.10 5.39 86.86 0.47 9.57 16 19 N -0.61 -31.81 2.40 -668.27 -1.61 -33.42 16 20 C -0.23 -13.39 9.85 84.03 0.83 -12.56 16 21 H 0.07 3.92 7.83 -2.91 -0.02 3.90 16 22 C -0.06 -3.47 5.46 84.86 0.46 -3.01 16 23 N -0.94 -60.43 10.67 21.65 0.23 -60.20 16 24 Si 0.96 49.85 29.55 68.60 2.03 51.88 16 25 H -0.27 -13.08 7.11 99.48 0.71 -12.37 16 26 H -0.29 -14.42 7.11 99.48 0.71 -13.71 16 27 H -0.30 -16.20 7.11 99.48 0.71 -15.49 16 28 C 0.14 5.81 5.28 86.51 0.46 6.26 16 29 N -0.33 -8.78 8.51 -49.52 -0.42 -9.20 16 30 O 0.13 2.62 11.18 71.95 0.80 3.42 16 31 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.09 0.35 8.14 -2.38 -0.02 0.33 16 33 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.12 0.68 8.14 -2.38 -0.02 0.66 16 36 H 0.18 4.51 8.06 -2.91 -0.02 4.49 16 37 H 0.13 3.30 3.78 -45.16 -0.17 3.13 16 38 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 42 H 0.08 1.87 7.05 -2.39 -0.02 1.85 16 43 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 44 H 0.07 2.21 5.42 -2.39 -0.01 2.20 16 45 H 0.08 2.57 8.14 -2.38 -0.02 2.55 16 46 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 47 H -0.01 -0.60 8.01 -2.39 -0.02 -0.62 16 48 H 0.02 1.45 7.09 -2.39 -0.02 1.43 16 49 H 0.24 15.35 8.31 -92.71 -0.77 14.58 16 50 H 0.07 2.84 5.99 -2.39 -0.01 2.83 16 51 H 0.05 2.80 6.65 -2.38 -0.02 2.79 16 Total: -1.00 -82.16 394.42 5.20 -76.96 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: 0.77 Total: 14.38 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: 5.89 Total: 10.47 kcal Atomic # 7 Polarization: -123.15 SS G_CDS: -4.23 Total: -127.38 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: 0.74 Total: -26.31 kcal Atomic # 14 Polarization: 49.85 SS G_CDS: 2.03 Total: 51.88 kcal Total: -82.16 5.20 -76.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963391334.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.189 kcal (2) G-P(sol) polarization free energy of solvation -82.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds