Wall clock time and date at job start Wed Apr 1 2020 05:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.47056 * 2 1 4 4 C 1.35305 * 126.66922 * 89.99821 * 3 2 1 5 5 C 1.42273 * 103.92303 * 179.97438 * 4 3 2 6 6 C 1.48339 * 126.93776 * 179.97438 * 5 4 3 7 7 O 1.21494 * 120.00244 * 352.29022 * 6 5 4 8 8 N 1.34776 * 119.99664 * 172.28956 * 6 5 4 9 9 C 1.46931 * 120.62768 * 183.96777 * 8 6 5 10 10 C 1.53185 * 108.77425 * 126.36870 * 9 8 6 11 11 C 1.53041 * 109.31698 * 54.63562 * 10 9 8 12 12 C 1.53045 * 109.53676 * 298.63520 * 11 10 9 13 13 H 1.09003 * 109.52207 * 301.39639 * 12 11 10 14 14 C 1.52994 * 109.49943 * 181.31229 * 12 11 10 15 15 H 1.09002 * 109.87636 * 179.01655 * 14 12 11 16 16 C 1.54324 * 110.01323 * 300.11755 * 14 12 11 17 17 C 1.55154 * 102.94630 * 141.68253 * 16 14 12 18 18 C 1.55130 * 101.48275 * 324.32883 * 17 16 14 19 19 N 1.47027 * 109.88111 * 57.99692 * 14 12 11 20 20 C 1.36939 * 125.64281 * 61.45356 * 19 14 12 21 21 H 1.08000 * 120.00579 * 12.25558 * 20 19 14 22 22 C 1.38815 * 119.99504 * 192.25381 * 20 19 14 23 23 N 1.31618 * 120.00299 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99750 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47198 * 270.00543 * 24 22 20 26 26 H 1.48497 * 109.47141 * 30.00273 * 24 22 20 27 27 H 1.48504 * 109.47085 * 150.00248 * 24 22 20 28 28 C 1.46925 * 120.63352 * 3.94324 * 8 6 5 29 29 N 1.30987 * 106.12384 * 0.25980 * 5 4 3 30 30 O 1.20902 * 111.43483 * 359.53971 * 29 5 4 31 31 H 1.08996 * 109.47524 * 300.00797 * 1 2 3 32 32 H 1.09004 * 109.46521 * 60.00778 * 1 2 3 33 33 H 1.09002 * 109.47165 * 179.97438 * 1 2 3 34 34 H 1.08993 * 109.47222 * 239.99631 * 2 1 3 35 35 H 1.08999 * 109.46910 * 119.99427 * 2 1 3 36 36 H 1.08006 * 128.04177 * 359.94919 * 4 3 2 37 37 H 1.09004 * 109.58477 * 246.15404 * 9 8 6 38 38 H 1.08998 * 109.58311 * 6.58277 * 9 8 6 39 39 H 1.09007 * 109.49615 * 174.58332 * 10 9 8 40 40 H 1.08997 * 109.50181 * 294.65085 * 10 9 8 41 41 H 1.08995 * 109.46343 * 178.61020 * 11 10 9 42 42 H 1.09003 * 109.45985 * 58.65124 * 11 10 9 43 43 H 1.09001 * 110.71933 * 260.04495 * 16 14 12 44 44 H 1.09004 * 110.72123 * 23.31080 * 16 14 12 45 45 H 1.08999 * 111.00695 * 82.56775 * 17 16 14 46 46 H 1.09004 * 111.00108 * 206.38732 * 17 16 14 47 47 H 1.08995 * 110.49930 * 278.45500 * 18 17 16 48 48 H 1.09004 * 110.34483 * 156.05745 * 18 17 16 49 49 H 0.96993 * 120.00225 * 180.02562 * 23 22 20 50 50 H 1.08998 * 109.58620 * 113.84571 * 28 8 6 51 51 H 1.08996 * 109.58655 * 353.41560 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3016 2.1826 1.0853 5 6 2.7396 3.4195 0.5352 6 6 3.1661 4.6269 1.2839 7 8 3.0316 4.6725 2.4906 8 7 3.7029 5.6733 0.6257 9 6 4.2096 6.8401 1.3610 10 6 5.6558 7.1041 0.9306 11 6 5.7128 7.2476 -0.5920 12 6 5.2440 5.9460 -1.2465 13 1 5.8778 5.1231 -0.9158 14 6 5.3323 6.0789 -2.7681 15 1 5.0162 5.1488 -3.2404 16 6 4.4391 7.2418 -3.2494 17 6 5.2816 7.8801 -4.3852 18 6 6.7219 7.7085 -3.8352 19 7 6.7125 6.3964 -3.1631 20 6 7.8085 5.6068 -2.9385 21 1 7.6803 4.5844 -2.6148 22 6 9.0842 6.1204 -3.1270 23 7 9.2405 7.3665 -3.5210 24 14 10.5794 5.0435 -2.8199 25 1 11.0037 5.1778 -1.4032 26 1 10.2350 3.6266 -3.1012 27 1 11.6880 5.4698 -3.7114 28 6 3.7930 5.6688 -0.8408 29 7 2.6842 3.2789 -0.7659 30 8 2.2996 2.1751 -1.0751 31 1 -0.3634 0.5139 0.8899 32 1 -0.3632 0.5137 -0.8901 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5137 0.8900 36 1 2.2060 1.9144 2.1271 37 1 3.5954 7.7111 1.1322 38 1 4.1779 6.6391 2.4318 39 1 6.0119 8.0233 1.3961 40 1 6.2860 6.2710 1.2418 41 1 6.7369 7.4600 -0.8987 42 1 5.0633 8.0654 -0.9042 43 1 3.4920 6.8659 -3.6364 44 1 4.2712 7.9577 -2.4447 45 1 5.1500 7.3376 -5.3214 46 1 5.0350 8.9346 -4.5091 47 1 6.9546 8.4987 -3.1214 48 1 7.4426 7.7105 -4.6530 49 1 10.1319 7.7252 -3.6530 50 1 3.1450 6.4442 -1.2491 51 1 3.4866 4.6950 -1.2227 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963391335.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:35 Heat of formation + Delta-G solvation = 40.367091 kcal Electronic energy + Delta-G solvation = -32247.460404 eV Core-core repulsion = 28150.364073 eV Total energy + Delta-G solvation = -4097.096332 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -46.18943 -41.46823 -39.90006 -37.83254 -35.84578 -35.23129 -34.64835 -33.65843 -32.64836 -31.20612 -31.11629 -28.26672 -27.28432 -26.49767 -25.23902 -25.05271 -23.86486 -23.39938 -22.31628 -21.83289 -20.41455 -19.82839 -18.90471 -18.61902 -18.51280 -17.90504 -17.20064 -16.85680 -16.40758 -16.16156 -15.75337 -15.66713 -15.55314 -15.37076 -15.04621 -14.56651 -14.45558 -14.35861 -14.11802 -13.84527 -13.65812 -13.59266 -13.43721 -13.21466 -12.93043 -12.80241 -12.72588 -12.51201 -12.37481 -12.05293 -12.02557 -11.89557 -11.83285 -11.71559 -11.64770 -11.58201 -11.46149 -11.24800 -11.22925 -10.87942 -10.64899 -10.47057 -9.80793 -8.76607 -7.83514 -5.17868 -0.01832 0.63709 1.41588 1.42381 1.50503 1.59756 1.94481 2.01186 2.48167 2.74283 3.30451 3.35872 3.63045 3.68801 3.86469 3.88952 3.96311 4.00256 4.11411 4.15621 4.22939 4.27097 4.32364 4.36460 4.38037 4.44777 4.47719 4.58339 4.69975 4.74743 4.75515 4.83443 4.90572 4.95367 4.98205 5.05738 5.08245 5.08976 5.16599 5.21340 5.24896 5.38959 5.41804 5.45772 5.49085 5.53724 5.65186 5.72787 5.83956 6.09578 6.28385 6.71700 7.04975 7.14500 7.83240 8.49628 9.26125 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011010 B = 0.003306 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2542.567726 B = 8466.361825 C = 9018.216171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.042 4.042 3 C -0.009 4.009 4 C -0.194 4.194 5 C -0.043 4.043 6 C 0.591 3.409 7 O -0.559 6.559 8 N -0.591 5.591 9 C 0.116 3.884 10 C -0.126 4.126 11 C -0.096 4.096 12 C -0.091 4.091 13 H 0.030 0.970 14 C 0.162 3.838 15 H 0.026 0.974 16 C -0.117 4.117 17 C -0.136 4.136 18 C 0.178 3.822 19 N -0.606 5.606 20 C -0.224 4.224 21 H 0.066 0.934 22 C -0.058 4.058 23 N -0.943 5.943 24 Si 0.962 3.038 25 H -0.291 1.291 26 H -0.274 1.274 27 H -0.293 1.293 28 C 0.090 3.910 29 N -0.341 5.341 30 O 0.115 5.885 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.090 0.910 34 H 0.106 0.894 35 H 0.121 0.879 36 H 0.194 0.806 37 H 0.094 0.906 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.042 0.958 41 H 0.040 0.960 42 H 0.072 0.928 43 H 0.089 0.911 44 H 0.079 0.921 45 H 0.061 0.939 46 H 0.082 0.918 47 H -0.003 1.003 48 H 0.035 0.965 49 H 0.245 0.755 50 H 0.089 0.911 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.958 -9.954 6.987 23.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.080 4.080 3 C -0.073 4.073 4 C -0.216 4.216 5 C -0.200 4.200 6 C 0.378 3.622 7 O -0.437 6.437 8 N -0.322 5.322 9 C -0.005 4.005 10 C -0.164 4.164 11 C -0.134 4.134 12 C -0.112 4.112 13 H 0.049 0.951 14 C 0.055 3.945 15 H 0.043 0.957 16 C -0.155 4.155 17 C -0.175 4.175 18 C 0.053 3.947 19 N -0.330 5.330 20 C -0.354 4.354 21 H 0.083 0.917 22 C -0.251 4.251 23 N -0.592 5.592 24 Si 0.792 3.208 25 H -0.218 1.218 26 H -0.199 1.199 27 H -0.219 1.219 28 C -0.033 4.033 29 N -0.044 5.044 30 O 0.043 5.957 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.109 0.891 34 H 0.125 0.875 35 H 0.139 0.861 36 H 0.211 0.789 37 H 0.112 0.888 38 H 0.107 0.893 39 H 0.110 0.890 40 H 0.060 0.940 41 H 0.059 0.941 42 H 0.091 0.909 43 H 0.107 0.893 44 H 0.098 0.902 45 H 0.080 0.920 46 H 0.101 0.899 47 H 0.015 0.985 48 H 0.053 0.947 49 H 0.055 0.945 50 H 0.107 0.893 51 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -19.508 -9.046 6.596 22.492 hybrid contribution 1.697 -0.484 0.817 1.944 sum -17.811 -9.530 7.413 21.518 Atomic orbital electron populations 1.21814 0.92563 1.03986 1.02422 1.20455 0.97173 0.83499 1.06870 1.25227 0.99819 0.98119 0.84095 1.22627 1.05495 0.90833 1.02675 1.23518 1.07457 0.98424 0.90611 1.17268 0.77684 0.81364 0.85922 1.90726 1.57514 1.81505 1.13980 1.48139 1.57891 1.17571 1.08571 1.21784 0.94414 0.87218 0.97110 1.21870 0.95857 1.02123 0.96554 1.21352 1.01117 0.97007 0.93913 1.21713 0.94622 0.97344 0.97538 0.95118 1.21038 0.85430 0.96550 0.91465 0.95664 1.22669 0.97656 0.96886 0.98258 1.22918 0.95889 1.00766 0.97878 1.21282 0.93380 0.85854 0.94216 1.44673 1.02362 1.19705 1.66261 1.19133 0.84898 0.93201 1.38160 0.91661 1.25474 0.99629 0.97355 1.02684 1.70120 1.20834 1.14660 1.53631 0.85313 0.79932 0.78502 0.77058 1.21827 1.19869 1.21898 1.22689 0.96804 1.06133 0.77652 1.73919 1.15209 1.00075 1.15246 1.84783 1.59219 1.17102 1.34594 0.92395 0.92694 0.89129 0.87534 0.86136 0.78883 0.88793 0.89292 0.89027 0.93960 0.94090 0.90917 0.89274 0.90232 0.92032 0.89946 0.98535 0.94672 0.94534 0.89309 0.86080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.89 71.98 0.71 -0.30 16 2 C -0.04 -0.34 6.50 29.85 0.19 -0.14 16 3 C -0.01 -0.16 6.73 25.01 0.17 0.01 16 4 C -0.19 -4.15 10.93 22.60 0.25 -3.90 16 5 C -0.04 -1.23 6.94 42.96 0.30 -0.93 16 6 C 0.59 19.11 7.72 86.93 0.67 19.78 16 7 O -0.56 -20.00 16.39 -3.70 -0.06 -20.06 16 8 N -0.59 -18.10 2.97 -821.76 -2.44 -20.54 16 9 C 0.12 3.18 6.42 86.36 0.55 3.74 16 10 C -0.13 -3.87 6.08 30.67 0.19 -3.68 16 11 C -0.10 -3.47 4.74 30.62 0.15 -3.32 16 12 C -0.09 -3.35 2.10 -10.72 -0.02 -3.38 16 13 H 0.03 1.34 8.04 -2.39 -0.02 1.33 16 14 C 0.16 6.46 2.95 45.34 0.13 6.59 16 15 H 0.03 1.05 8.14 -2.39 -0.02 1.04 16 16 C -0.12 -3.71 5.11 31.78 0.16 -3.55 16 17 C -0.14 -4.84 7.10 32.06 0.23 -4.62 16 18 C 0.18 8.58 5.47 86.93 0.48 9.06 16 19 N -0.61 -30.27 2.28 -667.82 -1.52 -31.80 16 20 C -0.22 -12.57 9.85 84.03 0.83 -11.74 16 21 H 0.07 3.65 7.83 -2.91 -0.02 3.63 16 22 C -0.06 -3.31 5.47 84.86 0.46 -2.85 16 23 N -0.94 -56.46 10.47 21.65 0.23 -56.23 16 24 Si 0.96 46.74 29.55 68.60 2.03 48.77 16 25 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 26 H -0.27 -12.76 7.11 99.48 0.71 -12.06 16 27 H -0.29 -14.18 7.11 99.48 0.71 -13.48 16 28 C 0.09 2.74 5.45 86.36 0.47 3.21 16 29 N -0.34 -9.51 8.52 -49.52 -0.42 -9.93 16 30 O 0.12 2.65 11.18 71.84 0.80 3.46 16 31 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.05 0.47 8.14 -2.38 -0.02 0.45 16 33 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 34 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.19 3.38 8.06 -2.91 -0.02 3.36 16 37 H 0.09 2.14 8.14 -2.38 -0.02 2.12 16 38 H 0.09 2.47 7.03 -2.39 -0.02 2.46 16 39 H 0.09 2.44 8.14 -2.38 -0.02 2.42 16 40 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.04 1.88 7.53 -2.39 -0.02 1.86 16 42 H 0.07 2.34 6.13 -2.39 -0.01 2.32 16 43 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 44 H 0.08 2.33 5.54 -2.38 -0.01 2.32 16 45 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 46 H 0.08 2.51 8.14 -2.38 -0.02 2.49 16 47 H 0.00 -0.18 8.11 -2.39 -0.02 -0.20 16 48 H 0.03 1.95 6.74 -2.38 -0.02 1.93 16 49 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 50 H 0.09 2.37 6.92 -2.39 -0.02 2.36 16 51 H 0.12 3.81 3.79 -43.56 -0.17 3.65 16 Total: -1.00 -71.79 393.86 5.30 -66.49 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: 0.77 Total: 15.89 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: 5.92 Total: 3.96 kcal Atomic # 7 Polarization: -114.34 SS G_CDS: -4.16 Total: -118.50 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: 0.74 Total: -16.60 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.77 kcal Total: -71.79 5.30 -66.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963391335.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.857 kcal (2) G-P(sol) polarization free energy of solvation -71.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds