Wall clock time and date at job start Wed Apr 1 2020 04:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50698 * 109.46948 * 2 1 4 4 C 1.38019 * 119.50946 * 124.99590 * 3 2 1 5 5 C 1.39932 * 119.13085 * 180.02562 * 4 3 2 6 6 C 1.48159 * 120.89077 * 179.97438 * 5 4 3 7 7 O 1.21511 * 120.00181 * 322.11309 * 6 5 4 8 8 N 1.34775 * 120.00098 * 142.12009 * 6 5 4 9 9 C 1.46500 * 120.00051 * 4.80954 * 8 6 5 10 10 C 1.46497 * 120.00081 * 184.81186 * 8 6 5 11 11 C 1.53004 * 109.47257 * 240.00005 * 10 8 6 12 12 C 1.53000 * 109.47495 * 179.97438 * 11 10 8 13 13 C 1.53000 * 109.46914 * 59.99794 * 12 11 10 14 14 N 1.46497 * 109.47034 * 180.02562 * 13 12 11 15 15 C 1.36940 * 120.00089 * 274.99943 * 14 13 12 16 16 H 1.08000 * 119.99715 * 0.02562 * 15 14 13 17 17 C 1.38814 * 120.00427 * 179.97438 * 15 14 13 18 18 N 1.31610 * 120.00306 * 180.02562 * 17 15 14 19 19 Si 1.86807 * 119.99561 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47018 * 90.00066 * 19 17 15 21 21 H 1.48504 * 109.46838 * 209.99565 * 19 17 15 22 22 H 1.48493 * 109.47334 * 329.99789 * 19 17 15 23 23 C 1.53002 * 109.47215 * 299.99991 * 13 12 11 24 24 C 1.52996 * 109.46939 * 60.00424 * 23 13 12 25 25 C 1.39613 * 118.21619 * 359.97438 * 5 4 3 26 26 C 1.38849 * 118.94567 * 0.27947 * 25 5 4 27 27 O 1.35689 * 119.62024 * 179.69993 * 26 25 5 28 28 N 1.31880 * 119.51464 * 305.01612 * 3 2 1 29 29 H 1.08996 * 109.47118 * 300.00371 * 1 2 3 30 30 H 1.09004 * 109.46372 * 60.00230 * 1 2 3 31 31 H 1.09000 * 109.47153 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47118 * 239.99628 * 2 1 3 33 33 H 1.09004 * 109.46372 * 119.99770 * 2 1 3 34 34 H 1.08002 * 120.43920 * 0.02562 * 4 3 2 35 35 H 1.09004 * 109.47054 * 84.79150 * 9 8 6 36 36 H 1.09004 * 109.47471 * 204.79407 * 9 8 6 37 37 H 1.09003 * 109.46827 * 324.79347 * 9 8 6 38 38 H 1.08994 * 109.47442 * 359.97438 * 10 8 6 39 39 H 1.09001 * 109.46894 * 299.99881 * 11 10 8 40 40 H 1.08994 * 109.47113 * 59.99819 * 11 10 8 41 41 H 1.09001 * 109.46952 * 299.99846 * 12 11 10 42 42 H 1.09001 * 109.47197 * 179.97438 * 12 11 10 43 43 H 1.09001 * 109.47268 * 60.00245 * 13 12 11 44 44 H 0.96997 * 120.00283 * 94.99789 * 14 13 12 45 45 H 0.97007 * 120.00243 * 180.02562 * 18 17 15 46 46 H 1.09001 * 109.47210 * 300.00290 * 23 13 12 47 47 H 1.09003 * 109.47315 * 180.02562 * 23 13 12 48 48 H 1.09001 * 109.46964 * 180.02562 * 24 23 13 49 49 H 1.08994 * 109.47650 * 60.00029 * 24 23 13 50 50 H 1.08002 * 120.52286 * 180.02562 * 25 5 4 51 51 H 0.96699 * 113.99934 * 89.99469 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.9084 1.8322 0.9840 5 6 3.3694 3.1534 0.9767 6 6 4.3100 3.6365 2.0144 7 8 4.1931 3.2592 3.1635 8 7 5.2953 4.4947 1.6840 9 6 5.3730 5.0319 0.3232 10 6 6.2886 4.8903 2.6854 11 6 6.2375 6.4067 2.8832 12 6 7.2744 6.8199 3.9296 13 6 8.6703 6.4146 3.4520 14 7 9.6632 6.8097 4.4541 15 6 10.1735 8.0804 4.4485 16 1 9.8438 8.7914 3.7055 17 6 11.1139 8.4550 5.3984 18 7 11.6040 9.6764 5.3933 19 14 11.6837 7.2252 6.6840 20 1 12.8631 6.4832 6.1707 21 1 12.0555 7.9461 7.9280 22 1 10.5856 6.2690 6.9754 23 6 8.7215 4.8983 3.2543 24 6 7.6846 4.4852 2.2079 25 6 2.9192 4.0040 -0.0346 26 6 2.0334 3.5104 -0.9832 27 8 1.5823 4.3269 -1.9685 28 7 1.6280 2.2529 -0.9399 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.2340 1.1434 1.7495 35 1 4.7237 5.9033 0.2390 36 1 6.4008 5.3221 0.1052 37 1 5.0523 4.2698 -0.3871 38 1 6.0696 4.3935 3.6305 39 1 6.4563 6.9039 1.9382 40 1 5.2432 6.6953 3.2239 41 1 7.0551 6.3226 4.8745 42 1 7.2383 7.9002 4.0701 43 1 8.8896 6.9118 2.5071 44 1 9.9591 6.1712 5.1217 45 1 12.2614 9.9380 6.0569 46 1 8.5022 4.4010 4.1991 47 1 9.7161 4.6095 2.9144 48 1 7.7207 3.4048 2.0673 49 1 7.9038 4.9823 1.2630 50 1 3.2514 5.0308 -0.0761 51 1 2.1317 4.3237 -2.7643 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963689252.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:54 Heat of formation + Delta-G solvation = -55.136692 kcal Electronic energy + Delta-G solvation = -30562.782763 eV Core-core repulsion = 26461.545077 eV Total energy + Delta-G solvation = -4101.237686 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.16358 -40.95292 -39.40644 -38.27183 -36.99771 -35.57474 -34.68950 -33.44568 -32.83030 -31.73606 -30.61734 -29.53933 -28.11450 -26.24536 -25.32227 -24.60451 -23.62146 -23.34594 -22.22903 -20.99546 -20.54963 -19.63015 -19.41965 -18.34156 -17.68370 -17.47047 -17.14830 -16.82221 -16.49381 -16.23533 -16.13351 -15.53326 -15.22405 -15.06589 -14.96577 -14.81136 -14.58207 -14.38128 -14.29907 -14.17040 -13.65131 -13.56248 -13.43033 -13.13741 -12.99635 -12.90201 -12.83493 -12.74826 -12.41797 -12.36831 -12.15041 -12.06774 -11.98992 -11.95321 -11.78979 -11.53606 -11.42540 -11.14258 -10.96383 -10.89729 -10.44292 -9.90991 -9.74277 -9.29053 -8.01004 -5.33413 -0.38996 -0.13958 1.38271 1.40599 1.47850 1.48789 1.72998 2.46327 2.49160 2.56141 3.15046 3.30095 3.42821 3.56890 3.71042 3.81054 3.83970 3.85526 4.10674 4.13902 4.19422 4.24988 4.30665 4.33086 4.38610 4.44651 4.49931 4.52726 4.55955 4.65993 4.67333 4.74380 4.79769 4.87679 4.88798 4.94374 5.05675 5.09731 5.10211 5.17874 5.19775 5.24533 5.30154 5.43371 5.46224 5.48728 5.58699 5.80030 6.18753 6.23689 6.57338 6.82885 6.88417 7.09996 7.87610 8.05371 9.20458 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.025700 B = 0.001986 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.247959 B =14093.778839 C =14743.001514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.074 4.074 3 C 0.152 3.848 4 C -0.138 4.138 5 C -0.070 4.070 6 C 0.556 3.444 7 O -0.569 6.569 8 N -0.592 5.592 9 C 0.056 3.944 10 C 0.144 3.856 11 C -0.109 4.109 12 C -0.126 4.126 13 C 0.176 3.824 14 N -0.754 5.754 15 C -0.224 4.224 16 H 0.059 0.941 17 C -0.066 4.066 18 N -0.984 5.984 19 Si 0.952 3.048 20 H -0.277 1.277 21 H -0.299 1.299 22 H -0.255 1.255 23 C -0.117 4.117 24 C -0.108 4.108 25 C -0.162 4.162 26 C 0.312 3.688 27 O -0.486 6.486 28 N -0.506 5.506 29 H 0.044 0.956 30 H 0.052 0.948 31 H 0.078 0.922 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.151 0.849 35 H 0.079 0.921 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.059 0.941 41 H 0.047 0.953 42 H 0.043 0.957 43 H 0.051 0.949 44 H 0.363 0.637 45 H 0.256 0.744 46 H 0.058 0.942 47 H 0.072 0.928 48 H 0.075 0.925 49 H 0.086 0.914 50 H 0.173 0.827 51 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.756 -20.398 -18.262 34.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.112 4.112 3 C 0.014 3.986 4 C -0.158 4.158 5 C -0.081 4.081 6 C 0.344 3.656 7 O -0.449 6.449 8 N -0.322 5.322 9 C -0.085 4.085 10 C 0.041 3.959 11 C -0.148 4.148 12 C -0.167 4.167 13 C 0.068 3.932 14 N -0.397 5.397 15 C -0.355 4.355 16 H 0.077 0.923 17 C -0.258 4.258 18 N -0.635 5.635 19 Si 0.780 3.220 20 H -0.203 1.203 21 H -0.226 1.226 22 H -0.180 1.180 23 C -0.156 4.156 24 C -0.147 4.147 25 C -0.183 4.183 26 C 0.133 3.867 27 O -0.296 6.296 28 N -0.226 5.226 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.097 0.903 32 H 0.116 0.884 33 H 0.118 0.882 34 H 0.169 0.831 35 H 0.098 0.902 36 H 0.113 0.887 37 H 0.108 0.892 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.078 0.922 41 H 0.066 0.934 42 H 0.062 0.938 43 H 0.069 0.931 44 H 0.196 0.804 45 H 0.065 0.935 46 H 0.077 0.923 47 H 0.091 0.909 48 H 0.093 0.907 49 H 0.105 0.895 50 H 0.190 0.810 51 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -21.762 -20.459 -18.040 34.894 hybrid contribution 1.514 0.458 1.519 2.193 sum -20.247 -20.001 -16.521 32.908 Atomic orbital electron populations 1.21661 0.93953 1.02771 1.01629 1.20666 0.97083 0.88437 1.04985 1.21322 0.91907 0.96720 0.88615 1.22193 0.98197 0.95511 0.99917 1.20120 0.97770 0.95291 0.94877 1.18524 0.80889 0.78726 0.87442 1.90788 1.73178 1.59391 1.21530 1.47868 1.27009 1.43947 1.13422 1.22508 1.05148 1.00018 0.80852 1.21108 0.87672 0.95269 0.91856 1.21722 0.98585 0.94436 1.00076 1.22023 0.96075 1.00236 0.98317 1.20469 0.87293 0.94048 0.91391 1.42865 1.49627 1.10876 1.36289 1.19040 1.16513 0.88985 1.10931 0.92277 1.25469 1.00349 0.98138 1.01808 1.69875 1.34811 1.19715 1.39134 0.85451 0.78823 0.78959 0.78785 1.20346 1.22632 1.18004 1.21700 0.99645 0.94724 0.99482 1.21720 0.91917 1.01730 0.99294 1.22767 0.97746 1.02914 0.94884 1.19099 0.90299 0.86395 0.90929 1.84783 1.55750 1.60794 1.28315 1.66840 1.24738 1.04370 1.26646 0.93728 0.92875 0.90292 0.88420 0.88197 0.83122 0.90243 0.88746 0.89250 0.90249 0.89979 0.92244 0.93389 0.93792 0.93112 0.80380 0.93508 0.92283 0.90927 0.90652 0.89529 0.80984 0.71478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.77 71.98 0.70 -0.87 16 2 C -0.07 -0.76 6.33 29.85 0.19 -0.57 16 3 C 0.15 2.37 6.17 42.50 0.26 2.64 16 4 C -0.14 -2.34 9.34 22.63 0.21 -2.13 16 5 C -0.07 -1.27 5.29 -19.90 -0.11 -1.37 16 6 C 0.56 12.76 7.41 86.88 0.64 13.41 16 7 O -0.57 -17.84 16.27 -3.75 -0.06 -17.90 16 8 N -0.59 -11.11 2.76 -825.64 -2.28 -13.39 16 9 C 0.06 0.59 7.90 127.77 1.01 1.60 16 10 C 0.14 3.27 2.51 44.99 0.11 3.38 16 11 C -0.11 -2.67 5.20 30.60 0.16 -2.51 16 12 C -0.13 -4.14 5.50 30.59 0.17 -3.97 16 13 C 0.18 6.17 2.77 44.99 0.12 6.29 16 14 N -0.75 -34.29 4.92 -322.94 -1.59 -35.88 16 15 C -0.22 -12.52 10.41 84.03 0.87 -11.65 16 16 H 0.06 3.61 8.06 -2.91 -0.02 3.58 16 17 C -0.07 -3.90 5.50 84.86 0.47 -3.44 16 18 N -0.98 -63.00 13.97 21.65 0.30 -62.70 16 19 Si 0.95 45.69 27.74 68.60 1.90 47.59 16 20 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 21 H -0.30 -14.67 7.11 99.48 0.71 -13.97 16 22 H -0.26 -11.18 6.52 99.48 0.65 -10.53 16 23 C -0.12 -3.18 5.39 30.59 0.16 -3.01 16 24 C -0.11 -2.22 5.19 30.59 0.16 -2.06 16 25 C -0.16 -2.30 7.61 22.75 0.17 -2.12 16 26 C 0.31 4.81 7.74 84.78 0.66 5.46 16 27 O -0.49 -5.81 13.56 -90.08 -1.22 -7.03 16 28 N -0.51 -8.91 9.87 -297.16 -2.93 -11.84 16 29 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.05 0.73 7.94 -2.38 -0.02 0.71 16 31 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.10 0.79 8.14 -2.39 -0.02 0.78 16 33 H 0.10 0.71 7.86 -2.38 -0.02 0.69 16 34 H 0.15 2.37 7.94 -2.91 -0.02 2.35 16 35 H 0.08 0.63 6.89 -2.39 -0.02 0.61 16 36 H 0.09 0.84 6.44 -2.38 -0.02 0.82 16 37 H 0.09 0.69 5.83 -2.39 -0.01 0.67 16 38 H 0.08 2.24 6.91 -2.39 -0.02 2.23 16 39 H 0.08 1.73 7.67 -2.39 -0.02 1.71 16 40 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.05 1.64 8.14 -2.39 -0.02 1.63 16 42 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.05 1.84 8.08 -2.39 -0.02 1.82 16 44 H 0.36 16.08 5.66 -92.71 -0.52 15.55 16 45 H 0.26 15.68 8.31 -92.70 -0.77 14.91 16 46 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 47 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 48 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 49 H 0.09 1.49 6.67 -2.39 -0.02 1.47 16 50 H 0.17 1.72 5.27 -2.91 -0.02 1.70 16 51 H 0.42 0.53 9.06 -74.06 -0.67 -0.14 16 Total: -1.00 -78.31 401.74 -0.20 -78.51 By element: Atomic # 1 Polarization: 23.86 SS G_CDS: -0.29 Total: 23.57 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: 5.97 Total: -0.93 kcal Atomic # 7 Polarization: -117.31 SS G_CDS: -6.50 Total: -123.81 kcal Atomic # 8 Polarization: -23.65 SS G_CDS: -1.28 Total: -24.93 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 1.90 Total: 47.59 kcal Total: -78.31 -0.20 -78.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963689252.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.377 kcal (2) G-P(sol) polarization free energy of solvation -78.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds