Wall clock time and date at job start Wed Apr 1 2020 04:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50708 * 109.46882 * 2 1 4 4 C 1.38356 * 120.26473 * 270.01727 * 3 2 1 5 5 N 1.31886 * 121.18087 * 179.97438 * 4 3 2 6 6 C 1.32235 * 121.80186 * 359.74772 * 5 4 3 7 7 O 1.35423 * 119.80514 * 180.26779 * 6 5 4 8 8 C 1.40282 * 120.39699 * 0.53639 * 6 5 4 9 9 C 1.47527 * 120.59351 * 179.72465 * 8 6 5 10 10 O 1.21578 * 120.00131 * 47.71002 * 9 8 6 11 11 N 1.34776 * 119.99717 * 227.70361 * 9 8 6 12 12 C 1.46501 * 120.00649 * 355.40273 * 11 9 8 13 13 C 1.46504 * 120.00078 * 175.39957 * 11 9 8 14 14 C 1.52988 * 109.47591 * 240.00172 * 13 11 9 15 15 C 1.52999 * 109.47534 * 179.97438 * 14 13 11 16 16 C 1.52993 * 109.47159 * 59.99830 * 15 14 13 17 17 N 1.46499 * 109.47461 * 180.02562 * 16 15 14 18 18 C 1.36941 * 120.00185 * 205.00424 * 17 16 15 19 19 H 1.08007 * 119.99743 * 359.97438 * 18 17 16 20 20 C 1.38807 * 119.99776 * 179.97438 * 18 17 16 21 21 N 1.31617 * 120.00331 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99816 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47225 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47448 * 119.99815 * 22 20 18 25 25 H 1.48498 * 109.47286 * 239.99967 * 22 20 18 26 26 C 1.53003 * 109.47368 * 300.00448 * 16 15 14 27 27 C 1.53003 * 109.47037 * 59.99822 * 26 16 15 28 28 C 1.38331 * 120.27090 * 89.99490 * 3 2 1 29 29 H 1.09000 * 109.46969 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47226 * 300.00521 * 1 2 3 31 31 H 1.09002 * 109.46765 * 60.00237 * 1 2 3 32 32 H 1.08993 * 109.47226 * 239.99479 * 2 1 3 33 33 H 1.09002 * 109.46760 * 119.98974 * 2 1 3 34 34 H 1.08000 * 119.41052 * 359.97438 * 4 3 2 35 35 H 0.96706 * 113.99587 * 270.27400 * 7 6 5 36 36 H 1.09001 * 109.47109 * 275.16202 * 12 11 9 37 37 H 1.09001 * 109.46792 * 35.14941 * 12 11 9 38 38 H 1.08995 * 109.47659 * 155.15611 * 12 11 9 39 39 H 1.09004 * 109.46549 * 0.02562 * 13 11 9 40 40 H 1.09009 * 109.47201 * 59.99772 * 14 13 11 41 41 H 1.08999 * 109.47427 * 300.00155 * 14 13 11 42 42 H 1.09001 * 109.47168 * 180.02562 * 15 14 13 43 43 H 1.09006 * 109.47114 * 299.99885 * 15 14 13 44 44 H 1.09006 * 109.47063 * 60.00024 * 16 15 14 45 45 H 0.97006 * 119.99887 * 24.99561 * 17 16 15 46 46 H 0.97003 * 120.00021 * 180.02562 * 21 20 18 47 47 H 1.08996 * 109.46953 * 179.97438 * 26 16 15 48 48 H 1.08998 * 109.46479 * 300.00016 * 26 16 15 49 49 H 1.08991 * 109.47224 * 60.00041 * 27 26 16 50 50 H 1.09001 * 109.46858 * 180.02562 * 27 26 16 51 51 H 1.07994 * 120.82707 * 0.04395 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2644 2.0785 -1.1950 5 7 2.7034 3.3219 -1.2161 6 6 2.9368 3.9975 -0.1035 7 8 3.3821 5.2746 -0.1724 8 6 2.7312 3.3974 1.1477 9 6 2.9960 4.1451 2.3916 10 8 2.5655 5.2742 2.5255 11 7 3.7150 3.5764 3.3795 12 6 4.1479 2.1818 3.2612 13 6 4.0638 4.3528 4.5719 14 6 5.5861 4.4257 4.7059 15 6 5.9504 5.2371 5.9508 16 6 5.3611 4.5613 7.1904 17 7 5.7094 5.3385 8.3825 18 6 5.7624 4.7275 9.6069 19 1 5.5470 3.6727 9.6938 20 6 6.0929 5.4639 10.7362 21 7 6.3558 6.7492 10.6301 22 14 6.1645 4.6306 12.4065 23 1 5.8301 3.1915 12.2566 24 1 7.5326 4.7644 12.9683 25 1 5.1883 5.2733 13.3226 26 6 3.8387 4.4884 7.0566 27 6 3.4745 3.6769 5.8116 28 6 2.2646 2.0784 1.1947 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 2.0828 1.5643 -2.1272 35 1 4.3456 5.3545 -0.1950 36 1 3.3491 1.5232 3.6021 37 1 4.3810 1.9609 2.2195 38 1 5.0355 2.0236 3.8736 39 1 3.6581 5.3604 4.4808 40 1 6.0059 4.9076 3.8228 41 1 5.9915 3.4180 4.7971 42 1 7.0350 5.2893 6.0459 43 1 5.5451 6.2448 5.8591 44 1 5.7664 3.5535 7.2821 45 1 5.9025 6.2859 8.3044 46 1 6.5871 7.2636 11.4193 47 1 3.4190 4.0065 7.9396 48 1 3.4335 5.4961 6.9649 49 1 3.8798 2.6693 5.9033 50 1 2.3899 3.6254 5.7160 51 1 2.0913 1.5861 2.1401 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000964053437.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:47 Heat of formation + Delta-G solvation = -37.761851 kcal Electronic energy + Delta-G solvation = -30885.279358 eV Core-core repulsion = 26784.795101 eV Total energy + Delta-G solvation = -4100.484257 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.38858 -39.84540 -38.04171 -37.66434 -35.53906 -34.72197 -33.71392 -32.52093 -30.72731 -30.44891 -29.57216 -27.86114 -27.05718 -25.06212 -24.46979 -23.65812 -22.54718 -22.26782 -21.06932 -19.65887 -19.37804 -19.04183 -17.70646 -17.33492 -16.94805 -16.60353 -16.34765 -15.34148 -15.30102 -15.07866 -14.51408 -14.43406 -14.19785 -13.90093 -13.84912 -13.74174 -13.58080 -13.40101 -13.09853 -12.94287 -12.64330 -12.55802 -12.47955 -12.28047 -12.07326 -11.85251 -11.83215 -11.55889 -11.44446 -10.92254 -10.78493 -10.75131 -10.70383 -10.36436 -10.21469 -10.18792 -10.12766 -9.75348 -9.72063 -9.55889 -9.20763 -8.89111 -8.70940 -6.94996 -5.76259 -3.04922 0.27420 0.63415 2.44265 2.71121 3.06398 3.31546 3.42551 3.47801 3.50364 3.99275 4.15314 4.26734 4.35649 4.51417 4.58414 4.78352 4.80377 4.82512 4.88696 4.95353 4.99615 5.14334 5.18561 5.25609 5.31623 5.33641 5.38642 5.43787 5.49604 5.54343 5.62314 5.69393 5.71162 5.74640 5.81386 5.85533 5.95492 6.01856 6.22291 6.24088 6.26351 6.40544 6.54891 6.61364 6.68379 6.96465 7.08472 7.12005 7.19623 7.41807 7.70081 7.96523 8.42457 9.53436 10.12229 10.46589 11.46504 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020796 B = 0.002107 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.062548 B =13285.042766 C =14135.875559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.078 4.078 3 C -0.151 4.151 4 C 0.144 3.856 5 N -0.501 5.501 6 C 0.354 3.646 7 O -0.465 6.465 8 C -0.187 4.187 9 C 0.561 3.439 10 O -0.513 6.513 11 N -0.603 5.603 12 C 0.071 3.929 13 C 0.140 3.860 14 C -0.118 4.118 15 C -0.121 4.121 16 C 0.178 3.822 17 N -0.726 5.726 18 C -0.236 4.236 19 H 0.070 0.930 20 C -0.015 4.015 21 N -0.932 5.932 22 Si 0.905 3.095 23 H -0.281 1.281 24 H -0.292 1.292 25 H -0.292 1.292 26 C -0.133 4.133 27 C -0.121 4.121 28 C -0.031 4.031 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.163 0.837 35 H 0.402 0.598 36 H 0.057 0.943 37 H 0.067 0.933 38 H 0.081 0.919 39 H 0.102 0.898 40 H 0.059 0.941 41 H 0.063 0.937 42 H 0.067 0.933 43 H 0.062 0.938 44 H 0.045 0.955 45 H 0.384 0.616 46 H 0.254 0.746 47 H 0.065 0.935 48 H 0.057 0.943 49 H 0.060 0.940 50 H 0.056 0.944 51 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.100 -15.890 -25.604 30.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.116 4.116 3 C -0.153 4.153 4 C -0.014 4.014 5 N -0.219 5.219 6 C 0.174 3.826 7 O -0.272 6.272 8 C -0.194 4.194 9 C 0.347 3.653 10 O -0.388 6.388 11 N -0.336 5.336 12 C -0.072 4.072 13 C 0.038 3.962 14 C -0.157 4.157 15 C -0.160 4.160 16 C 0.068 3.932 17 N -0.366 5.366 18 C -0.368 4.368 19 H 0.088 0.912 20 C -0.211 4.211 21 N -0.581 5.581 22 Si 0.736 3.264 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.174 4.174 27 C -0.160 4.160 28 C -0.056 4.056 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.181 0.819 35 H 0.260 0.740 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.100 0.900 39 H 0.120 0.880 40 H 0.078 0.922 41 H 0.082 0.918 42 H 0.086 0.914 43 H 0.081 0.919 44 H 0.063 0.937 45 H 0.217 0.783 46 H 0.064 0.936 47 H 0.083 0.917 48 H 0.076 0.924 49 H 0.079 0.921 50 H 0.075 0.925 51 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -7.720 -14.753 -26.118 30.975 hybrid contribution 0.392 -0.603 1.717 1.862 sum -7.328 -15.356 -24.401 29.748 Atomic orbital electron populations 1.21792 0.94293 1.02208 1.02499 1.20471 0.96422 0.91022 1.03653 1.20872 1.02205 0.98672 0.93588 1.22625 0.92210 0.88702 0.97894 1.67307 1.14609 1.08724 1.31242 1.19102 0.92965 0.84215 0.86299 1.84810 1.27691 1.19257 1.95407 1.21067 1.08039 0.95484 0.94825 1.17913 0.78837 0.85960 0.82570 1.90848 1.49718 1.18301 1.79924 1.47917 1.53565 1.12983 1.19153 1.21958 1.00910 0.81904 1.02398 1.21313 0.95461 0.96621 0.82819 1.21814 0.94277 1.00931 0.98703 1.21771 1.01209 0.99283 0.93771 1.20218 0.91445 0.94998 0.86500 1.42449 1.82655 1.09281 1.02208 1.19273 1.39083 0.93525 0.84888 0.91198 1.24748 1.02679 0.95778 0.97906 1.69672 1.53884 1.05970 1.28560 0.86146 0.77198 0.78366 0.84647 1.20609 1.21921 1.21907 1.22245 1.00245 0.99507 0.95375 1.21862 0.99911 0.99632 0.94562 1.21722 0.92990 0.91703 0.99229 0.91884 0.92418 0.92382 0.90269 0.90413 0.81942 0.73951 0.92418 0.91474 0.89986 0.87962 0.92216 0.91792 0.91439 0.91942 0.93657 0.78270 0.93580 0.91653 0.92391 0.92106 0.92548 0.83609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.61 9.89 37.16 0.37 -0.24 16 2 C -0.08 -0.29 6.08 -27.88 -0.17 -0.45 16 3 C -0.15 -0.95 5.14 -104.54 -0.54 -1.48 16 4 C 0.14 1.05 10.84 -17.48 -0.19 0.86 16 5 N -0.50 -5.25 10.37 -12.98 -0.13 -5.38 16 6 C 0.35 4.04 7.75 -16.61 -0.13 3.91 16 7 O -0.46 -5.47 12.58 -28.08 -0.35 -5.82 16 8 C -0.19 -2.01 4.94 -104.69 -0.52 -2.53 16 9 C 0.56 7.36 7.00 -12.47 -0.09 7.27 16 10 O -0.51 -8.96 15.83 -4.82 -0.08 -9.03 16 11 N -0.60 -6.74 2.76 -175.17 -0.48 -7.22 16 12 C 0.07 0.53 8.09 59.85 0.48 1.02 16 13 C 0.14 1.85 2.51 -67.93 -0.17 1.67 16 14 C -0.12 -1.50 5.19 -26.74 -0.14 -1.64 16 15 C -0.12 -1.94 5.39 -26.74 -0.14 -2.09 16 16 C 0.18 3.40 2.77 -67.93 -0.19 3.21 16 17 N -0.73 -17.93 5.12 -53.42 -0.27 -18.21 16 18 C -0.24 -6.48 9.93 -15.06 -0.15 -6.63 16 19 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 20 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 21 N -0.93 -28.18 13.06 55.49 0.72 -27.46 16 22 Si 0.91 22.29 29.55 -169.99 -5.02 17.27 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 25 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 26 C -0.13 -2.31 5.50 -26.73 -0.15 -2.46 16 27 C -0.12 -1.65 5.21 -26.73 -0.14 -1.78 16 28 C -0.03 -0.23 7.56 -38.89 -0.29 -0.53 16 29 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.08 0.19 8.09 -51.93 -0.42 -0.23 16 33 H 0.08 0.23 8.09 -51.93 -0.42 -0.19 16 34 H 0.16 0.70 8.06 -52.49 -0.42 0.27 16 35 H 0.40 2.78 9.06 45.56 0.41 3.19 16 36 H 0.06 0.35 7.06 -51.93 -0.37 -0.02 16 37 H 0.07 0.42 6.24 -51.93 -0.32 0.10 16 38 H 0.08 0.59 6.44 -51.93 -0.33 0.25 16 39 H 0.10 1.62 6.91 -51.93 -0.36 1.26 16 40 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 41 H 0.06 0.73 6.66 -51.93 -0.35 0.39 16 42 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 43 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 45 H 0.38 10.17 7.80 -40.82 -0.32 9.85 16 46 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 47 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 48 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 49 H 0.06 0.75 7.67 -51.93 -0.40 0.35 16 50 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 51 H 0.15 0.87 6.28 -52.49 -0.33 0.54 16 LS Contribution 405.76 15.07 6.11 6.11 Total: -1.00 -35.33 405.76 -9.15 -44.48 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -7.40 Total: 7.69 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: -2.25 Total: -2.42 kcal Atomic # 7 Polarization: -58.10 SS G_CDS: -0.17 Total: -58.27 kcal Atomic # 8 Polarization: -14.42 SS G_CDS: -0.43 Total: -14.85 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -35.33 -9.15 -44.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000964053437.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.720 kcal (2) G-P(sol) polarization free energy of solvation -35.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds