Wall clock time and date at job start Wed Apr 1 2020 04:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50708 * 109.46882 * 2 1 4 4 C 1.38356 * 120.26473 * 270.01727 * 3 2 1 5 5 N 1.31886 * 121.18087 * 179.97438 * 4 3 2 6 6 C 1.32235 * 121.80186 * 359.74772 * 5 4 3 7 7 O 1.35423 * 119.80514 * 180.26779 * 6 5 4 8 8 C 1.40282 * 120.39699 * 0.53639 * 6 5 4 9 9 C 1.47527 * 120.59351 * 179.72465 * 8 6 5 10 10 O 1.21578 * 120.00131 * 47.71002 * 9 8 6 11 11 N 1.34776 * 119.99717 * 227.70361 * 9 8 6 12 12 C 1.46501 * 120.00649 * 355.40273 * 11 9 8 13 13 C 1.46504 * 120.00078 * 175.39957 * 11 9 8 14 14 C 1.52988 * 109.47591 * 240.00172 * 13 11 9 15 15 C 1.52999 * 109.47534 * 179.97438 * 14 13 11 16 16 C 1.52993 * 109.47159 * 59.99830 * 15 14 13 17 17 N 1.46499 * 109.47461 * 180.02562 * 16 15 14 18 18 C 1.36941 * 120.00185 * 205.00424 * 17 16 15 19 19 H 1.08007 * 119.99743 * 359.97438 * 18 17 16 20 20 C 1.38807 * 119.99776 * 179.97438 * 18 17 16 21 21 N 1.31617 * 120.00331 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99816 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47225 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47448 * 119.99815 * 22 20 18 25 25 H 1.48498 * 109.47286 * 239.99967 * 22 20 18 26 26 C 1.53003 * 109.47368 * 300.00448 * 16 15 14 27 27 C 1.53003 * 109.47037 * 59.99822 * 26 16 15 28 28 C 1.38331 * 120.27090 * 89.99490 * 3 2 1 29 29 H 1.09000 * 109.46969 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47226 * 300.00521 * 1 2 3 31 31 H 1.09002 * 109.46765 * 60.00237 * 1 2 3 32 32 H 1.08993 * 109.47226 * 239.99479 * 2 1 3 33 33 H 1.09002 * 109.46760 * 119.98974 * 2 1 3 34 34 H 1.08000 * 119.41052 * 359.97438 * 4 3 2 35 35 H 0.96706 * 113.99587 * 270.27400 * 7 6 5 36 36 H 1.09001 * 109.47109 * 275.16202 * 12 11 9 37 37 H 1.09001 * 109.46792 * 35.14941 * 12 11 9 38 38 H 1.08995 * 109.47659 * 155.15611 * 12 11 9 39 39 H 1.09004 * 109.46549 * 0.02562 * 13 11 9 40 40 H 1.09009 * 109.47201 * 59.99772 * 14 13 11 41 41 H 1.08999 * 109.47427 * 300.00155 * 14 13 11 42 42 H 1.09001 * 109.47168 * 180.02562 * 15 14 13 43 43 H 1.09006 * 109.47114 * 299.99885 * 15 14 13 44 44 H 1.09006 * 109.47063 * 60.00024 * 16 15 14 45 45 H 0.97006 * 119.99887 * 24.99561 * 17 16 15 46 46 H 0.97003 * 120.00021 * 180.02562 * 21 20 18 47 47 H 1.08996 * 109.46953 * 179.97438 * 26 16 15 48 48 H 1.08998 * 109.46479 * 300.00016 * 26 16 15 49 49 H 1.08991 * 109.47224 * 60.00041 * 27 26 16 50 50 H 1.09001 * 109.46858 * 180.02562 * 27 26 16 51 51 H 1.07994 * 120.82707 * 0.04395 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2644 2.0785 -1.1950 5 7 2.7034 3.3219 -1.2161 6 6 2.9368 3.9975 -0.1035 7 8 3.3821 5.2746 -0.1724 8 6 2.7312 3.3974 1.1477 9 6 2.9960 4.1451 2.3916 10 8 2.5655 5.2742 2.5255 11 7 3.7150 3.5764 3.3795 12 6 4.1479 2.1818 3.2612 13 6 4.0638 4.3528 4.5719 14 6 5.5861 4.4257 4.7059 15 6 5.9504 5.2371 5.9508 16 6 5.3611 4.5613 7.1904 17 7 5.7094 5.3385 8.3825 18 6 5.7624 4.7275 9.6069 19 1 5.5470 3.6727 9.6938 20 6 6.0929 5.4639 10.7362 21 7 6.3558 6.7492 10.6301 22 14 6.1645 4.6306 12.4065 23 1 5.8301 3.1915 12.2566 24 1 7.5326 4.7644 12.9683 25 1 5.1883 5.2733 13.3226 26 6 3.8387 4.4884 7.0566 27 6 3.4745 3.6769 5.8116 28 6 2.2646 2.0784 1.1947 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 2.0828 1.5643 -2.1272 35 1 4.3456 5.3545 -0.1950 36 1 3.3491 1.5232 3.6021 37 1 4.3810 1.9609 2.2195 38 1 5.0355 2.0236 3.8736 39 1 3.6581 5.3604 4.4808 40 1 6.0059 4.9076 3.8228 41 1 5.9915 3.4180 4.7971 42 1 7.0350 5.2893 6.0459 43 1 5.5451 6.2448 5.8591 44 1 5.7664 3.5535 7.2821 45 1 5.9025 6.2859 8.3044 46 1 6.5871 7.2636 11.4193 47 1 3.4190 4.0065 7.9396 48 1 3.4335 5.4961 6.9649 49 1 3.8798 2.6693 5.9033 50 1 2.3899 3.6254 5.7160 51 1 2.0913 1.5861 2.1401 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000964053437.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:47 Heat of formation + Delta-G solvation = -63.611782 kcal Electronic energy + Delta-G solvation = -30886.400295 eV Core-core repulsion = 26784.795101 eV Total energy + Delta-G solvation = -4101.605194 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.14884 -40.79021 -39.23179 -38.46219 -36.80230 -35.31304 -35.14686 -33.55949 -32.34259 -31.71825 -30.11412 -29.23427 -27.92092 -26.08989 -25.20777 -24.99421 -23.59896 -23.33685 -22.14534 -20.83210 -20.43268 -19.80301 -19.10018 -18.41289 -18.07213 -17.51007 -17.12501 -16.86986 -16.14595 -16.01737 -15.69204 -15.38128 -15.28972 -15.00414 -14.77015 -14.72781 -14.54547 -14.32304 -14.05556 -13.96144 -13.86751 -13.46058 -13.21707 -13.12329 -13.06314 -13.01363 -12.87516 -12.83471 -12.41531 -12.31577 -12.17272 -12.07211 -11.98462 -11.82488 -11.65204 -11.52220 -11.25106 -11.10629 -10.88253 -10.85042 -10.44361 -9.86186 -9.65128 -8.99115 -7.92597 -5.20993 -0.39771 0.02676 1.47491 1.48355 1.52273 1.58130 1.83124 2.41688 2.57221 2.64308 3.27726 3.40599 3.63398 3.70557 3.74236 3.82394 3.84091 3.87637 4.11439 4.19466 4.23630 4.28009 4.35641 4.38659 4.51264 4.52035 4.53644 4.57082 4.58490 4.70619 4.71919 4.79170 4.84062 4.89827 4.93710 5.00637 5.09906 5.12740 5.18718 5.22066 5.26580 5.34776 5.38537 5.47918 5.50789 5.53817 5.55502 5.63793 6.25968 6.29916 6.47502 6.78156 7.01877 7.35121 8.12779 8.34815 9.31482 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020796 B = 0.002107 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.062548 B =13285.042766 C =14135.875559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.074 4.074 3 C -0.137 4.137 4 C 0.143 3.857 5 N -0.525 5.525 6 C 0.333 3.667 7 O -0.489 6.489 8 C -0.202 4.202 9 C 0.561 3.439 10 O -0.570 6.570 11 N -0.595 5.595 12 C 0.061 3.939 13 C 0.145 3.855 14 C -0.105 4.105 15 C -0.114 4.114 16 C 0.174 3.826 17 N -0.741 5.741 18 C -0.231 4.231 19 H 0.079 0.921 20 C -0.082 4.082 21 N -0.973 5.973 22 Si 0.971 3.029 23 H -0.262 1.262 24 H -0.295 1.295 25 H -0.298 1.298 26 C -0.124 4.124 27 C -0.106 4.106 28 C -0.025 4.025 29 H 0.075 0.925 30 H 0.045 0.955 31 H 0.053 0.947 32 H 0.099 0.901 33 H 0.093 0.907 34 H 0.194 0.806 35 H 0.415 0.585 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.089 0.911 42 H 0.064 0.936 43 H 0.046 0.954 44 H 0.052 0.948 45 H 0.370 0.630 46 H 0.249 0.751 47 H 0.048 0.952 48 H 0.036 0.964 49 H 0.087 0.913 50 H 0.059 0.941 51 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.343 -20.296 -27.040 34.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.111 4.111 3 C -0.139 4.139 4 C -0.014 4.014 5 N -0.243 5.243 6 C 0.154 3.846 7 O -0.299 6.299 8 C -0.209 4.209 9 C 0.349 3.651 10 O -0.449 6.449 11 N -0.326 5.326 12 C -0.080 4.080 13 C 0.042 3.958 14 C -0.144 4.144 15 C -0.153 4.153 16 C 0.066 3.934 17 N -0.380 5.380 18 C -0.363 4.363 19 H 0.097 0.903 20 C -0.274 4.274 21 N -0.624 5.624 22 Si 0.801 3.199 23 H -0.187 1.187 24 H -0.222 1.222 25 H -0.225 1.225 26 C -0.165 4.165 27 C -0.145 4.145 28 C -0.051 4.051 29 H 0.094 0.906 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.118 0.882 33 H 0.111 0.889 34 H 0.211 0.789 35 H 0.276 0.724 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.111 0.889 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.108 0.892 42 H 0.082 0.918 43 H 0.065 0.935 44 H 0.071 0.929 45 H 0.201 0.799 46 H 0.058 0.942 47 H 0.067 0.933 48 H 0.055 0.945 49 H 0.105 0.895 50 H 0.077 0.923 51 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -7.956 -19.248 -27.593 34.571 hybrid contribution 0.421 0.679 2.039 2.190 sum -7.535 -18.568 -25.554 32.474 Atomic orbital electron populations 1.21807 0.94606 1.02808 1.01745 1.20562 0.95901 0.89175 1.05502 1.21166 1.00400 0.99776 0.92543 1.23254 0.90697 0.87749 0.99746 1.67331 1.15750 1.10195 1.31025 1.19271 0.94105 0.84216 0.87001 1.84758 1.29178 1.20382 1.95544 1.20882 1.10144 0.96674 0.93162 1.18304 0.78093 0.85364 0.83371 1.90818 1.52185 1.20875 1.81030 1.47873 1.52690 1.14299 1.17758 1.22302 1.02137 0.79580 1.03963 1.21022 0.95557 0.95541 0.83657 1.21699 0.93887 1.01714 0.97077 1.21648 1.00636 0.98900 0.94077 1.20472 0.92453 0.94752 0.85698 1.42720 1.82852 1.09057 1.03363 1.19678 1.36881 0.93878 0.85898 0.90310 1.25579 1.03737 0.96460 1.01630 1.69837 1.56018 1.07519 1.29069 0.85096 0.76567 0.78210 0.80061 1.18663 1.22212 1.22505 1.22039 0.98669 0.98945 0.96834 1.21713 1.00269 1.00028 0.92520 1.21971 0.91956 0.90379 1.00788 0.90644 0.93583 0.92811 0.88214 0.88876 0.78916 0.72445 0.90113 0.89875 0.88930 0.91239 0.91242 0.89241 0.91761 0.93479 0.92948 0.79896 0.94230 0.93302 0.94547 0.89461 0.92269 0.81577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.89 71.98 0.71 -0.01 16 2 C -0.07 -0.21 6.08 29.85 0.18 -0.03 16 3 C -0.14 -1.25 5.14 -19.81 -0.10 -1.35 16 4 C 0.14 1.70 10.84 84.71 0.92 2.62 16 5 N -0.52 -10.44 10.37 -308.00 -3.19 -13.64 16 6 C 0.33 7.57 7.75 85.13 0.66 8.23 16 7 O -0.49 -12.10 12.58 -77.50 -0.98 -13.07 16 8 C -0.20 -4.12 4.94 -19.91 -0.10 -4.22 16 9 C 0.56 14.56 7.00 86.69 0.61 15.17 16 10 O -0.57 -20.80 15.83 5.71 0.09 -20.71 16 11 N -0.60 -12.23 2.76 -826.38 -2.28 -14.51 16 12 C 0.06 0.68 8.09 127.77 1.03 1.71 16 13 C 0.15 3.70 2.51 44.99 0.11 3.82 16 14 C -0.11 -2.49 5.19 30.59 0.16 -2.33 16 15 C -0.11 -3.63 5.39 30.59 0.16 -3.47 16 16 C 0.17 6.59 2.77 44.99 0.12 6.72 16 17 N -0.74 -37.31 5.12 -322.93 -1.65 -38.96 16 18 C -0.23 -12.71 9.93 84.03 0.83 -11.88 16 19 H 0.08 4.11 7.83 -2.91 -0.02 4.08 16 20 C -0.08 -4.75 5.50 84.86 0.47 -4.28 16 21 N -0.97 -60.44 13.06 21.65 0.28 -60.16 16 22 Si 0.97 46.17 29.55 68.60 2.03 48.20 16 23 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 24 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 25 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 26 C -0.12 -4.33 5.50 30.60 0.17 -4.16 16 27 C -0.11 -2.73 5.21 30.60 0.16 -2.57 16 28 C -0.03 -0.32 7.56 22.72 0.17 -0.14 16 29 H 0.07 0.20 8.14 -2.39 -0.02 0.18 16 30 H 0.04 0.33 8.14 -2.39 -0.02 0.32 16 31 H 0.05 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.10 -0.04 8.09 -2.39 -0.02 -0.06 16 33 H 0.09 0.06 8.09 -2.39 -0.02 0.04 16 34 H 0.19 0.95 8.06 -2.91 -0.02 0.93 16 35 H 0.41 6.29 9.06 -74.05 -0.67 5.62 16 36 H 0.08 0.57 7.06 -2.39 -0.02 0.56 16 37 H 0.08 0.71 6.24 -2.39 -0.01 0.69 16 38 H 0.09 0.88 6.44 -2.39 -0.02 0.86 16 39 H 0.07 2.28 6.91 -2.38 -0.02 2.26 16 40 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 41 H 0.09 1.71 6.66 -2.39 -0.02 1.70 16 42 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 43 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 44 H 0.05 1.93 8.08 -2.38 -0.02 1.91 16 45 H 0.37 20.38 7.80 -92.70 -0.72 19.65 16 46 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 47 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 48 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 49 H 0.09 1.82 7.67 -2.39 -0.02 1.80 16 50 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 51 H 0.17 1.31 6.28 -2.91 -0.02 1.30 16 Total: -1.00 -80.60 405.76 0.13 -80.47 By element: Atomic # 1 Polarization: 29.01 SS G_CDS: -0.44 Total: 28.57 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: 6.27 Total: 3.82 kcal Atomic # 7 Polarization: -120.42 SS G_CDS: -6.85 Total: -127.26 kcal Atomic # 8 Polarization: -32.90 SS G_CDS: -0.88 Total: -33.79 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.20 kcal Total: -80.60 0.13 -80.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000964053437.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.856 kcal (2) G-P(sol) polarization free energy of solvation -80.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds