Wall clock time and date at job start Wed Apr 1 2020 04:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.47098 * 2 1 4 4 C 1.38025 * 119.51338 * 125.00119 * 3 2 1 5 5 C 1.39920 * 119.13428 * 179.97438 * 4 3 2 6 6 C 1.48165 * 120.89473 * 180.02562 * 5 4 3 7 7 O 1.21508 * 119.99649 * 0.02562 * 6 5 4 8 8 N 1.34774 * 120.00030 * 180.02562 * 6 5 4 9 9 C 1.46503 * 120.00146 * 179.97438 * 8 6 5 10 10 C 1.52993 * 109.47441 * 180.02562 * 9 8 6 11 11 H 1.09000 * 109.45104 * 64.94473 * 10 9 8 12 12 C 1.54865 * 109.45014 * 184.87004 * 10 9 8 13 13 C 1.47097 * 110.32131 * 191.29174 * 12 10 9 14 14 C 1.52568 * 114.33133 * 297.19125 * 13 12 10 15 15 C 1.50885 * 109.34798 * 85.02306 * 14 13 12 16 16 C 1.53942 * 110.09532 * 268.11232 * 15 14 13 17 17 N 1.44580 * 109.44988 * 305.00217 * 10 9 8 18 18 C 1.36938 * 118.64044 * 329.26814 * 17 10 9 19 19 H 1.08005 * 120.00143 * 331.90850 * 18 17 10 20 20 C 1.38812 * 120.00272 * 151.91408 * 18 17 10 21 21 N 1.31615 * 119.99963 * 344.14469 * 20 18 17 22 22 Si 1.86800 * 119.99975 * 164.14281 * 20 18 17 23 23 H 1.48497 * 109.47455 * 94.37324 * 22 20 18 24 24 H 1.48506 * 109.47092 * 214.37374 * 22 20 18 25 25 H 1.48501 * 109.47268 * 334.37190 * 22 20 18 26 26 C 1.39617 * 118.21746 * 0.02562 * 5 4 3 27 27 C 1.38853 * 118.94359 * 359.97438 * 26 5 4 28 28 O 1.35686 * 119.61670 * 179.97438 * 27 26 5 29 29 N 1.31874 * 119.51277 * 304.72636 * 3 2 1 30 30 H 1.08991 * 109.47388 * 59.99943 * 1 2 3 31 31 H 1.09002 * 109.46946 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47112 * 299.99839 * 1 2 3 33 33 H 1.09000 * 109.47112 * 240.00161 * 2 1 3 34 34 H 1.09000 * 109.47580 * 120.00188 * 2 1 3 35 35 H 1.08006 * 120.43008 * 359.96112 * 4 3 2 36 36 H 0.97002 * 120.00228 * 0.02562 * 8 6 5 37 37 H 1.09000 * 109.47059 * 300.00381 * 9 8 6 38 38 H 1.09001 * 109.46513 * 59.99762 * 9 8 6 39 39 H 1.08994 * 109.32759 * 311.54874 * 12 10 9 40 40 H 1.08996 * 109.32983 * 71.03132 * 12 10 9 41 41 H 1.08994 * 108.51398 * 175.93703 * 13 12 10 42 42 H 1.08999 * 108.38710 * 58.35299 * 13 12 10 43 43 H 1.09007 * 109.48975 * 325.06737 * 14 13 12 44 44 H 1.08994 * 109.51136 * 205.00304 * 14 13 12 45 45 H 1.08997 * 109.36227 * 147.92653 * 15 14 13 46 46 H 1.08992 * 109.26149 * 28.24424 * 15 14 13 47 47 H 1.08999 * 108.94851 * 279.87738 * 16 15 14 48 48 H 1.09002 * 108.87729 * 161.20142 * 16 15 14 49 49 H 0.97003 * 120.00131 * 179.97438 * 21 20 18 50 50 H 1.07996 * 120.53163 * 179.97438 * 26 5 4 51 51 H 0.96708 * 114.00187 * 90.00302 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9085 1.8322 0.9839 5 6 3.3703 3.1530 0.9760 6 6 4.3120 3.6359 2.0130 7 8 4.6939 2.8814 2.8855 8 7 4.7449 4.9120 1.9885 9 6 5.6756 5.3896 3.0141 10 6 6.0051 6.8616 2.7582 11 1 5.1041 7.4622 2.8828 12 6 7.0815 7.3321 3.7673 13 6 7.2193 8.7959 3.7218 14 6 7.6969 9.3408 2.3791 15 6 6.5123 9.5177 1.4615 16 6 6.3006 8.2461 0.6200 17 7 6.5038 7.0159 1.4100 18 6 7.1929 5.9776 0.8422 19 1 7.7441 5.2898 1.4663 20 6 7.1831 5.8092 -0.5357 21 7 6.2843 6.4318 -1.2684 22 14 8.4455 4.6988 -1.3499 23 1 7.8718 3.3400 -1.5221 24 1 8.8099 5.2543 -2.6780 25 1 9.6584 4.6195 -0.4968 26 6 2.9200 4.0038 -0.0353 27 6 2.0382 3.5087 -0.9868 28 8 1.5914 4.3237 -1.9753 29 7 1.6325 2.2512 -0.9432 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 3.2333 1.1436 1.7500 36 1 4.4397 5.5144 1.2921 37 1 5.2170 5.2860 3.9975 38 1 6.5915 4.7999 2.9765 39 1 6.7906 7.0283 4.7729 40 1 8.0370 6.8718 3.5164 41 1 7.9287 9.1008 4.4910 42 1 6.2504 9.2397 3.9505 43 1 8.4017 8.6397 1.9320 44 1 8.1869 10.3026 2.5301 45 1 6.6919 10.3640 0.7986 46 1 5.6205 9.7088 2.0584 47 1 7.0034 8.2520 -0.2131 48 1 5.2845 8.2495 0.2254 49 1 6.2777 6.3143 -2.2313 50 1 3.2521 5.0305 -0.0768 51 1 2.1442 4.3191 -2.7689 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968951957.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:36 Heat of formation + Delta-G solvation = -31.975643 kcal Electronic energy + Delta-G solvation = -32092.518840 eV Core-core repulsion = 27992.285493 eV Total energy + Delta-G solvation = -4100.233348 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.62606 -39.08723 -38.05488 -37.10010 -34.60954 -33.94666 -33.54122 -32.25270 -31.56938 -30.75950 -29.32569 -27.21086 -25.85469 -24.82280 -23.66228 -23.44631 -22.38133 -21.71401 -20.08307 -19.58043 -19.25676 -18.51353 -17.04648 -16.78848 -16.09477 -15.65070 -15.47127 -15.41043 -14.83897 -14.73686 -14.52268 -14.40816 -14.09602 -14.05494 -13.63552 -13.52382 -13.12562 -12.95567 -12.80296 -12.21232 -12.15556 -12.00929 -11.93744 -11.71722 -11.56579 -11.44687 -11.30439 -11.17251 -11.09940 -10.90496 -10.66487 -10.27101 -10.09391 -10.04632 -9.90294 -9.76010 -9.68953 -9.63001 -9.57975 -9.21457 -8.70960 -8.50330 -8.34287 -6.78389 -5.91302 -3.35215 0.88741 1.08502 3.14442 3.29028 3.37341 3.40786 3.54464 3.71761 3.98681 4.40076 4.50608 4.84643 5.03903 5.12621 5.15312 5.19644 5.26326 5.29637 5.32042 5.38783 5.43369 5.54524 5.58993 5.75175 5.79303 5.81395 5.87722 5.94871 6.01427 6.03668 6.08571 6.19252 6.20669 6.28434 6.33536 6.50354 6.52888 6.55601 6.60167 6.63997 6.69922 6.79254 6.92814 7.02968 7.10993 7.33631 7.57833 7.58454 7.74539 7.96264 8.12553 8.34073 8.70152 9.11935 9.76458 10.21756 11.15182 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012041 B = 0.003550 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2324.793377 B = 7885.039224 C = 8506.098613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.071 4.071 3 C 0.141 3.859 4 C -0.129 4.129 5 C -0.060 4.060 6 C 0.552 3.448 7 O -0.552 6.552 8 N -0.677 5.677 9 C 0.128 3.872 10 C 0.173 3.827 11 H 0.045 0.955 12 C -0.136 4.136 13 C -0.101 4.101 14 C -0.107 4.107 15 C -0.143 4.143 16 C 0.180 3.820 17 N -0.584 5.584 18 C -0.251 4.251 19 H 0.063 0.937 20 C 0.014 3.986 21 N -0.901 5.901 22 Si 0.889 3.111 23 H -0.290 1.290 24 H -0.290 1.290 25 H -0.280 1.280 26 C -0.144 4.144 27 C 0.310 3.690 28 O -0.480 6.480 29 N -0.491 5.491 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.148 0.852 36 H 0.412 0.588 37 H 0.054 0.946 38 H 0.071 0.929 39 H 0.049 0.951 40 H 0.063 0.937 41 H 0.041 0.959 42 H 0.046 0.954 43 H 0.074 0.926 44 H 0.039 0.961 45 H 0.049 0.951 46 H 0.043 0.957 47 H 0.073 0.927 48 H 0.024 0.976 49 H 0.252 0.748 50 H 0.153 0.847 51 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.783 -2.849 3.300 8.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.109 4.109 3 C 0.003 3.997 4 C -0.150 4.150 5 C -0.071 4.071 6 C 0.337 3.663 7 O -0.432 6.432 8 N -0.326 5.326 9 C 0.004 3.996 10 C 0.064 3.936 11 H 0.063 0.937 12 C -0.177 4.177 13 C -0.139 4.139 14 C -0.144 4.144 15 C -0.182 4.182 16 C 0.056 3.944 17 N -0.306 5.306 18 C -0.381 4.381 19 H 0.080 0.920 20 C -0.185 4.185 21 N -0.545 5.545 22 Si 0.719 3.281 23 H -0.217 1.217 24 H -0.216 1.216 25 H -0.205 1.205 26 C -0.166 4.166 27 C 0.132 3.868 28 O -0.287 6.287 29 N -0.211 5.211 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.165 0.835 36 H 0.250 0.750 37 H 0.072 0.928 38 H 0.090 0.910 39 H 0.067 0.933 40 H 0.082 0.918 41 H 0.060 0.940 42 H 0.065 0.935 43 H 0.092 0.908 44 H 0.058 0.942 45 H 0.068 0.932 46 H 0.062 0.938 47 H 0.091 0.909 48 H 0.042 0.958 49 H 0.062 0.938 50 H 0.171 0.829 51 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -7.537 -3.405 3.461 8.966 hybrid contribution 1.648 0.135 -0.771 1.825 sum -5.889 -3.270 2.690 7.253 Atomic orbital electron populations 1.21674 0.94144 1.01562 1.02736 1.20487 0.96973 0.90034 1.03357 1.20881 0.93445 0.95623 0.89753 1.22069 0.97505 0.95682 0.99716 1.20401 0.96884 0.94313 0.95493 1.17984 0.81176 0.82686 0.84422 1.90709 1.59186 1.55562 1.37771 1.45627 1.45073 1.10987 1.30950 1.21564 0.92934 0.96256 0.88889 1.20520 0.94056 0.92139 0.86911 0.93669 1.21367 1.01545 0.96133 0.98626 1.20287 0.99918 0.96499 0.97152 1.20948 0.98733 0.99324 0.95421 1.22065 0.97217 1.00077 0.98845 1.20998 0.99828 0.81593 0.91998 1.43735 1.63622 1.12853 1.10398 1.19032 1.23081 1.05965 0.89972 0.91966 1.24882 0.97705 0.98612 0.97255 1.70025 1.33441 1.45884 1.05151 0.86496 0.82121 0.80452 0.79040 1.21666 1.21625 1.20490 1.22473 0.96364 1.02410 0.95362 1.18923 0.91219 0.86308 0.90398 1.84755 1.54830 1.61511 1.27633 1.66710 1.24856 1.03715 1.25821 0.91584 0.92389 0.92871 0.89902 0.89983 0.83455 0.75000 0.92828 0.91038 0.93256 0.91776 0.94038 0.93510 0.90777 0.94178 0.93219 0.93781 0.90867 0.95761 0.93753 0.82935 0.73960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.77 37.16 0.36 -1.05 16 2 C -0.07 -0.75 6.33 -27.88 -0.18 -0.93 16 3 C 0.14 2.01 6.17 -82.65 -0.51 1.50 16 4 C -0.13 -1.99 9.27 -39.03 -0.36 -2.35 16 5 C -0.06 -1.04 5.91 -104.68 -0.62 -1.66 16 6 C 0.55 10.66 7.80 -12.18 -0.10 10.57 16 7 O -0.55 -11.79 16.44 5.36 0.09 -11.70 16 8 N -0.68 -12.79 4.68 -61.15 -0.29 -13.07 16 9 C 0.13 2.34 4.52 -4.04 -0.02 2.33 16 10 C 0.17 3.09 2.19 -67.98 -0.15 2.94 16 11 H 0.05 0.80 8.06 -51.93 -0.42 0.38 16 12 C -0.14 -2.18 5.06 -28.58 -0.14 -2.33 16 13 C -0.10 -1.52 5.16 -29.79 -0.15 -1.67 16 14 C -0.11 -1.74 5.51 -28.01 -0.15 -1.89 16 15 C -0.14 -2.43 5.71 -27.30 -0.16 -2.59 16 16 C 0.18 3.72 4.66 -2.94 -0.01 3.71 16 17 N -0.58 -12.05 1.77 -164.47 -0.29 -12.35 16 18 C -0.25 -5.90 7.63 -15.06 -0.11 -6.01 16 19 H 0.06 1.54 6.74 -52.48 -0.35 1.19 16 20 C 0.01 0.35 4.85 -17.43 -0.08 0.26 16 21 N -0.90 -22.35 11.14 55.49 0.62 -21.73 16 22 Si 0.89 20.59 29.58 -169.99 -5.03 15.56 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 C -0.14 -2.41 9.55 -38.84 -0.37 -2.78 16 27 C 0.31 4.98 7.74 -17.16 -0.13 4.85 16 28 O -0.48 -6.94 13.56 -18.76 -0.25 -7.19 16 29 N -0.49 -7.69 9.88 -9.60 -0.09 -7.79 16 30 H 0.07 0.73 7.95 -51.93 -0.41 0.32 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.08 0.73 7.86 -51.93 -0.41 0.32 16 35 H 0.15 2.10 7.62 -52.48 -0.40 1.70 16 36 H 0.41 7.98 6.22 -40.82 -0.25 7.72 16 37 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.07 1.45 6.84 -51.93 -0.35 1.10 16 39 H 0.05 0.70 8.11 -51.93 -0.42 0.28 16 40 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.05 0.68 7.35 -51.93 -0.38 0.29 16 43 H 0.07 1.39 7.48 -51.92 -0.39 1.01 16 44 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.04 0.71 7.31 -51.93 -0.38 0.33 16 47 H 0.07 1.73 6.46 -51.93 -0.34 1.39 16 48 H 0.02 0.54 8.02 -51.93 -0.42 0.12 16 49 H 0.25 6.27 8.31 -40.82 -0.34 5.93 16 50 H 0.15 2.62 6.53 -52.49 -0.34 2.27 16 51 H 0.40 4.16 9.06 45.56 0.41 4.57 16 LS Contribution 401.25 15.07 6.05 6.05 Total: -1.00 -27.60 401.25 -9.46 -37.06 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: -7.37 Total: 12.28 kcal Atomic # 6 Polarization: 5.77 SS G_CDS: -2.89 Total: 2.88 kcal Atomic # 7 Polarization: -54.88 SS G_CDS: -0.05 Total: -54.94 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: -0.17 Total: -18.89 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.03 Total: 15.56 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -27.60 -9.46 -37.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968951957.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.089 kcal (2) G-P(sol) polarization free energy of solvation -27.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds