Wall clock time and date at job start Wed Apr 1 2020 04:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.47098 * 2 1 4 4 C 1.38025 * 119.51338 * 125.00119 * 3 2 1 5 5 C 1.39920 * 119.13428 * 179.97438 * 4 3 2 6 6 C 1.48165 * 120.89473 * 180.02562 * 5 4 3 7 7 O 1.21508 * 119.99649 * 0.02562 * 6 5 4 8 8 N 1.34774 * 120.00030 * 180.02562 * 6 5 4 9 9 C 1.46503 * 120.00146 * 179.97438 * 8 6 5 10 10 C 1.52993 * 109.47441 * 180.02562 * 9 8 6 11 11 H 1.09000 * 109.45104 * 64.94473 * 10 9 8 12 12 C 1.54865 * 109.45014 * 184.87004 * 10 9 8 13 13 C 1.47097 * 110.32131 * 191.29174 * 12 10 9 14 14 C 1.52568 * 114.33133 * 297.19125 * 13 12 10 15 15 C 1.50885 * 109.34798 * 85.02306 * 14 13 12 16 16 C 1.53942 * 110.09532 * 268.11232 * 15 14 13 17 17 N 1.44580 * 109.44988 * 305.00217 * 10 9 8 18 18 C 1.36938 * 118.64044 * 329.26814 * 17 10 9 19 19 H 1.08005 * 120.00143 * 331.90850 * 18 17 10 20 20 C 1.38812 * 120.00272 * 151.91408 * 18 17 10 21 21 N 1.31615 * 119.99963 * 344.14469 * 20 18 17 22 22 Si 1.86800 * 119.99975 * 164.14281 * 20 18 17 23 23 H 1.48497 * 109.47455 * 94.37324 * 22 20 18 24 24 H 1.48506 * 109.47092 * 214.37374 * 22 20 18 25 25 H 1.48501 * 109.47268 * 334.37190 * 22 20 18 26 26 C 1.39617 * 118.21746 * 0.02562 * 5 4 3 27 27 C 1.38853 * 118.94359 * 359.97438 * 26 5 4 28 28 O 1.35686 * 119.61670 * 179.97438 * 27 26 5 29 29 N 1.31874 * 119.51277 * 304.72636 * 3 2 1 30 30 H 1.08991 * 109.47388 * 59.99943 * 1 2 3 31 31 H 1.09002 * 109.46946 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47112 * 299.99839 * 1 2 3 33 33 H 1.09000 * 109.47112 * 240.00161 * 2 1 3 34 34 H 1.09000 * 109.47580 * 120.00188 * 2 1 3 35 35 H 1.08006 * 120.43008 * 359.96112 * 4 3 2 36 36 H 0.97002 * 120.00228 * 0.02562 * 8 6 5 37 37 H 1.09000 * 109.47059 * 300.00381 * 9 8 6 38 38 H 1.09001 * 109.46513 * 59.99762 * 9 8 6 39 39 H 1.08994 * 109.32759 * 311.54874 * 12 10 9 40 40 H 1.08996 * 109.32983 * 71.03132 * 12 10 9 41 41 H 1.08994 * 108.51398 * 175.93703 * 13 12 10 42 42 H 1.08999 * 108.38710 * 58.35299 * 13 12 10 43 43 H 1.09007 * 109.48975 * 325.06737 * 14 13 12 44 44 H 1.08994 * 109.51136 * 205.00304 * 14 13 12 45 45 H 1.08997 * 109.36227 * 147.92653 * 15 14 13 46 46 H 1.08992 * 109.26149 * 28.24424 * 15 14 13 47 47 H 1.08999 * 108.94851 * 279.87738 * 16 15 14 48 48 H 1.09002 * 108.87729 * 161.20142 * 16 15 14 49 49 H 0.97003 * 120.00131 * 179.97438 * 21 20 18 50 50 H 1.07996 * 120.53163 * 179.97438 * 26 5 4 51 51 H 0.96708 * 114.00187 * 90.00302 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9085 1.8322 0.9839 5 6 3.3703 3.1530 0.9760 6 6 4.3120 3.6359 2.0130 7 8 4.6939 2.8814 2.8855 8 7 4.7449 4.9120 1.9885 9 6 5.6756 5.3896 3.0141 10 6 6.0051 6.8616 2.7582 11 1 5.1041 7.4622 2.8828 12 6 7.0815 7.3321 3.7673 13 6 7.2193 8.7959 3.7218 14 6 7.6969 9.3408 2.3791 15 6 6.5123 9.5177 1.4615 16 6 6.3006 8.2461 0.6200 17 7 6.5038 7.0159 1.4100 18 6 7.1929 5.9776 0.8422 19 1 7.7441 5.2898 1.4663 20 6 7.1831 5.8092 -0.5357 21 7 6.2843 6.4318 -1.2684 22 14 8.4455 4.6988 -1.3499 23 1 7.8718 3.3400 -1.5221 24 1 8.8099 5.2543 -2.6780 25 1 9.6584 4.6195 -0.4968 26 6 2.9200 4.0038 -0.0353 27 6 2.0382 3.5087 -0.9868 28 8 1.5914 4.3237 -1.9753 29 7 1.6325 2.2512 -0.9432 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 3.2333 1.1436 1.7500 36 1 4.4397 5.5144 1.2921 37 1 5.2170 5.2860 3.9975 38 1 6.5915 4.7999 2.9765 39 1 6.7906 7.0283 4.7729 40 1 8.0370 6.8718 3.5164 41 1 7.9287 9.1008 4.4910 42 1 6.2504 9.2397 3.9505 43 1 8.4017 8.6397 1.9320 44 1 8.1869 10.3026 2.5301 45 1 6.6919 10.3640 0.7986 46 1 5.6205 9.7088 2.0584 47 1 7.0034 8.2520 -0.2131 48 1 5.2845 8.2495 0.2254 49 1 6.2777 6.3143 -2.2313 50 1 3.2521 5.0305 -0.0768 51 1 2.1442 4.3191 -2.7689 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968951957.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:35 Heat of formation + Delta-G solvation = -49.634723 kcal Electronic energy + Delta-G solvation = -32093.284596 eV Core-core repulsion = 27992.285493 eV Total energy + Delta-G solvation = -4100.999103 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.89976 -40.55658 -39.53964 -38.26194 -36.09264 -35.27706 -34.98840 -33.51396 -32.93770 -32.46277 -30.44806 -28.75858 -27.42954 -26.01720 -25.21891 -24.77296 -23.63462 -22.99873 -21.49913 -20.92189 -20.80197 -19.81534 -18.47414 -18.10520 -17.67391 -17.25004 -16.77613 -16.69328 -16.29493 -16.23179 -15.91473 -15.80323 -15.49936 -15.21831 -14.95819 -14.95163 -14.54997 -14.30962 -14.10614 -13.70153 -13.48347 -13.27691 -13.15941 -12.98427 -12.91388 -12.85333 -12.79586 -12.71110 -12.38858 -12.35400 -12.02246 -11.93793 -11.55400 -11.43037 -11.37658 -11.30866 -11.20272 -10.99876 -10.95549 -10.51996 -10.35620 -9.90243 -9.89960 -8.55124 -7.80060 -5.22480 -0.42940 -0.12731 1.38066 1.45214 1.49267 1.76174 2.16693 2.45279 2.51946 2.71019 3.34891 3.38865 3.54697 3.61941 3.87298 3.89288 4.03663 4.07352 4.18159 4.27041 4.28563 4.39373 4.41961 4.45869 4.49661 4.60835 4.65744 4.70414 4.79593 4.82262 4.96948 5.01539 5.06409 5.07036 5.13695 5.19799 5.24340 5.27159 5.32869 5.38911 5.42756 5.47332 5.53839 5.58443 5.68348 5.76222 5.79695 5.90124 6.47169 6.50262 6.58233 6.77813 7.15989 7.26816 8.00164 8.39124 9.23173 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012041 B = 0.003550 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2324.793377 B = 7885.039224 C = 8506.098613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.071 4.071 3 C 0.146 3.854 4 C -0.131 4.131 5 C -0.075 4.075 6 C 0.550 3.450 7 O -0.577 6.577 8 N -0.678 5.678 9 C 0.130 3.870 10 C 0.172 3.828 11 H 0.057 0.943 12 C -0.128 4.128 13 C -0.101 4.101 14 C -0.103 4.103 15 C -0.133 4.133 16 C 0.190 3.810 17 N -0.588 5.588 18 C -0.236 4.236 19 H 0.048 0.952 20 C -0.020 4.020 21 N -0.912 5.912 22 Si 0.924 3.076 23 H -0.300 1.300 24 H -0.294 1.294 25 H -0.282 1.282 26 C -0.153 4.153 27 C 0.309 3.691 28 O -0.485 6.485 29 N -0.497 5.497 30 H 0.050 0.950 31 H 0.082 0.918 32 H 0.047 0.953 33 H 0.094 0.906 34 H 0.104 0.896 35 H 0.159 0.841 36 H 0.410 0.590 37 H 0.072 0.928 38 H 0.048 0.952 39 H 0.074 0.926 40 H 0.043 0.957 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.042 0.958 44 H 0.062 0.938 45 H 0.060 0.940 46 H 0.059 0.941 47 H 0.038 0.962 48 H 0.004 0.996 49 H 0.246 0.754 50 H 0.142 0.858 51 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.565 -2.849 4.575 9.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.108 4.108 3 C 0.008 3.992 4 C -0.152 4.152 5 C -0.086 4.086 6 C 0.336 3.664 7 O -0.459 6.459 8 N -0.326 5.326 9 C 0.006 3.994 10 C 0.065 3.935 11 H 0.075 0.925 12 C -0.168 4.168 13 C -0.138 4.138 14 C -0.141 4.141 15 C -0.172 4.172 16 C 0.065 3.935 17 N -0.310 5.310 18 C -0.366 4.366 19 H 0.066 0.934 20 C -0.217 4.217 21 N -0.558 5.558 22 Si 0.755 3.245 23 H -0.228 1.228 24 H -0.220 1.220 25 H -0.208 1.208 26 C -0.175 4.175 27 C 0.130 3.870 28 O -0.295 6.295 29 N -0.218 5.218 30 H 0.069 0.931 31 H 0.101 0.899 32 H 0.067 0.933 33 H 0.113 0.887 34 H 0.122 0.878 35 H 0.177 0.823 36 H 0.247 0.753 37 H 0.090 0.910 38 H 0.066 0.934 39 H 0.092 0.908 40 H 0.061 0.939 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.061 0.939 44 H 0.081 0.919 45 H 0.079 0.921 46 H 0.078 0.922 47 H 0.057 0.943 48 H 0.022 0.978 49 H 0.056 0.944 50 H 0.160 0.840 51 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -8.308 -3.381 4.740 10.145 hybrid contribution 1.877 0.110 -1.154 2.206 sum -6.431 -3.272 3.586 8.057 Atomic orbital electron populations 1.21649 0.93403 1.02930 1.01747 1.20669 0.97497 0.87654 1.05017 1.21511 0.92204 0.97017 0.88462 1.22273 0.97549 0.95008 1.00342 1.20357 0.97348 0.95432 0.95479 1.18296 0.81144 0.82473 0.84495 1.90679 1.60282 1.56044 1.38871 1.45689 1.44948 1.11021 1.30914 1.21587 0.92039 0.96100 0.89696 1.20690 0.95061 0.92029 0.85766 0.92519 1.21281 0.99516 0.96980 0.99051 1.20274 1.01248 0.95423 0.96853 1.20908 0.97698 0.99772 0.95735 1.21943 0.98350 0.98066 0.98813 1.20778 0.97500 0.83332 0.91910 1.43769 1.63543 1.12334 1.11364 1.18957 1.22184 1.05812 0.89688 0.93448 1.25173 0.98821 0.99830 0.97833 1.70095 1.34177 1.46840 1.04666 0.85956 0.81100 0.79116 0.78316 1.22844 1.22017 1.20808 1.22357 0.97241 1.01958 0.95930 1.18988 0.90865 0.86647 0.90519 1.84708 1.55276 1.61339 1.28176 1.66854 1.25022 1.03585 1.26316 0.93080 0.89868 0.93336 0.88744 0.87766 0.82339 0.75314 0.90975 0.93386 0.90776 0.93857 0.91967 0.92060 0.93885 0.91936 0.92143 0.92249 0.94303 0.97822 0.94395 0.83997 0.72011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 9.77 71.98 0.70 -1.74 16 2 C -0.07 -1.33 6.33 29.85 0.19 -1.15 16 3 C 0.15 3.98 6.17 42.50 0.26 4.24 16 4 C -0.13 -3.95 9.27 22.63 0.21 -3.74 16 5 C -0.08 -2.64 5.91 -19.90 -0.12 -2.76 16 6 C 0.55 21.52 7.80 86.88 0.68 22.20 16 7 O -0.58 -24.79 16.44 -3.74 -0.06 -24.85 16 8 N -0.68 -25.96 4.68 -465.68 -2.18 -28.14 16 9 C 0.13 4.74 4.52 86.38 0.39 5.13 16 10 C 0.17 5.99 2.19 45.98 0.10 6.09 16 11 H 0.06 1.88 8.06 -2.39 -0.02 1.86 16 12 C -0.13 -3.85 5.06 29.40 0.15 -3.70 16 13 C -0.10 -2.70 5.16 28.62 0.15 -2.56 16 14 C -0.10 -3.15 5.51 29.76 0.16 -2.98 16 15 C -0.13 -4.29 5.71 30.22 0.17 -4.12 16 16 C 0.19 7.87 4.66 86.49 0.40 8.28 16 17 N -0.59 -24.43 1.77 -674.25 -1.20 -25.62 16 18 C -0.24 -11.32 7.63 84.03 0.64 -10.68 16 19 H 0.05 2.42 6.74 -2.91 -0.02 2.40 16 20 C -0.02 -0.99 4.85 84.86 0.41 -0.57 16 21 N -0.91 -46.55 11.14 21.65 0.24 -46.31 16 22 Si 0.92 43.25 29.58 68.60 2.03 45.28 16 23 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 24 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 25 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 26 C -0.15 -5.21 9.55 22.75 0.22 -5.00 16 27 C 0.31 9.87 7.74 84.78 0.66 10.53 16 28 O -0.49 -13.92 13.56 -90.04 -1.22 -15.14 16 29 N -0.50 -15.18 9.88 -297.16 -2.94 -18.12 16 30 H 0.05 1.05 7.95 -2.39 -0.02 1.03 16 31 H 0.08 1.04 8.14 -2.39 -0.02 1.03 16 32 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.10 1.53 7.86 -2.39 -0.02 1.51 16 35 H 0.16 4.35 7.62 -2.91 -0.02 4.33 16 36 H 0.41 16.24 6.22 -92.71 -0.58 15.66 16 37 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 38 H 0.05 1.98 6.84 -2.39 -0.02 1.96 16 39 H 0.07 1.89 8.11 -2.39 -0.02 1.87 16 40 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.06 1.51 7.35 -2.39 -0.02 1.50 16 43 H 0.04 1.58 7.48 -2.38 -0.02 1.57 16 44 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 46 H 0.06 1.76 7.31 -2.39 -0.02 1.74 16 47 H 0.04 1.87 6.46 -2.39 -0.02 1.86 16 48 H 0.00 0.17 8.02 -2.39 -0.02 0.15 16 49 H 0.25 12.59 8.31 -92.71 -0.77 11.82 16 50 H 0.14 5.08 6.53 -2.91 -0.02 5.06 16 51 H 0.42 8.55 9.06 -74.05 -0.67 7.88 16 Total: -1.00 -60.27 401.25 -0.24 -60.51 By element: Atomic # 1 Polarization: 35.22 SS G_CDS: -0.29 Total: 34.93 kcal Atomic # 6 Polarization: 12.09 SS G_CDS: 5.38 Total: 17.47 kcal Atomic # 7 Polarization: -112.12 SS G_CDS: -6.07 Total: -118.19 kcal Atomic # 8 Polarization: -38.71 SS G_CDS: -1.28 Total: -40.00 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -60.27 -0.24 -60.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968951957.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.874 kcal (2) G-P(sol) polarization free energy of solvation -60.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds