Wall clock time and date at job start Wed Apr 1 2020 04:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50709 * 109.47121 * 2 1 4 4 C 1.36762 * 125.79897 * 269.99757 * 3 2 1 5 5 C 1.47261 * 126.94468 * 359.97438 * 4 3 2 6 6 O 1.21626 * 119.99980 * 353.28295 * 5 4 3 7 7 N 1.34784 * 120.00049 * 173.27977 * 5 4 3 8 8 C 1.47488 * 125.66480 * 352.26422 * 7 5 4 9 9 C 1.55015 * 104.90068 * 204.00110 * 8 7 5 10 10 C 1.54509 * 101.52232 * 323.62570 * 9 8 7 11 11 C 1.47187 * 125.66353 * 172.24169 * 7 5 4 12 12 C 1.52516 * 110.05914 * 153.10273 * 10 9 8 13 13 N 1.47299 * 108.38354 * 72.02085 * 12 10 9 14 14 C 1.36943 * 121.06145 * 229.38742 * 13 12 10 15 15 H 1.07996 * 120.00343 * 159.82534 * 14 13 12 16 16 C 1.38814 * 119.99460 * 339.82636 * 14 13 12 17 17 N 1.31622 * 119.99573 * 151.98454 * 16 14 13 18 18 Si 1.86795 * 120.00282 * 331.98125 * 16 14 13 19 19 H 1.48501 * 109.47291 * 93.19637 * 18 16 14 20 20 H 1.48505 * 109.47055 * 213.19371 * 18 16 14 21 21 H 1.48503 * 109.47210 * 333.19404 * 18 16 14 22 22 C 1.47174 * 117.88348 * 49.41150 * 13 12 10 23 23 C 1.53278 * 108.54264 * 308.89673 * 22 13 12 24 24 O 1.42082 * 110.33551 * 276.05434 * 10 9 8 25 25 C 1.46692 * 106.11623 * 180.24574 * 4 3 2 26 26 C 1.34488 * 106.32805 * 359.62791 * 25 4 3 27 27 N 1.34657 * 125.79903 * 90.02353 * 3 2 1 28 28 C 1.46498 * 124.85450 * 359.97438 * 27 3 2 29 29 H 1.08998 * 109.47113 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47260 * 300.00093 * 1 2 3 31 31 H 1.08999 * 109.47168 * 60.00134 * 1 2 3 32 32 H 1.08999 * 109.47704 * 239.99608 * 2 1 3 33 33 H 1.09003 * 109.46848 * 119.99193 * 2 1 3 34 34 H 1.09002 * 110.35122 * 85.14456 * 8 7 5 35 35 H 1.08999 * 110.35570 * 322.85926 * 8 7 5 36 36 H 1.08996 * 111.01397 * 81.68184 * 9 8 7 37 37 H 1.08997 * 111.01579 * 205.52928 * 9 8 7 38 38 H 1.08998 * 109.91198 * 59.13902 * 11 7 5 39 39 H 1.09006 * 110.06604 * 297.96533 * 11 7 5 40 40 H 1.08997 * 109.68193 * 191.74342 * 12 10 9 41 41 H 1.08992 * 109.67904 * 312.26257 * 12 10 9 42 42 H 0.96995 * 119.99909 * 180.02562 * 17 16 14 43 43 H 1.09000 * 109.62560 * 68.60947 * 22 13 12 44 44 H 1.08999 * 109.62610 * 188.99028 * 22 13 12 45 45 H 1.08999 * 109.50874 * 172.79739 * 23 22 13 46 46 H 1.09001 * 109.50687 * 292.94528 * 23 22 13 47 47 H 1.07995 * 126.83865 * 179.75011 * 25 4 3 48 48 H 1.08002 * 125.57099 * 180.15993 * 26 25 4 49 49 H 1.09008 * 109.46751 * 90.00351 * 28 27 3 50 50 H 1.08997 * 109.47307 * 210.00390 * 28 27 3 51 51 H 1.08999 * 109.47423 * 330.00850 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2990 2.1751 -1.1092 5 6 2.1540 1.7630 -2.5156 6 8 1.8775 0.6099 -2.7860 7 7 2.3275 2.6638 -3.5031 8 6 2.5045 4.1166 -3.3205 9 6 2.0481 4.7454 -4.6618 10 6 2.5489 3.6971 -5.6804 11 6 2.3723 2.3609 -4.9427 12 6 1.6848 3.7340 -6.9367 13 7 1.9971 4.9672 -7.6793 14 6 1.0015 5.7976 -8.1204 15 1 1.2242 6.8261 -8.3631 16 6 -0.2938 5.3172 -8.2556 17 7 -1.3159 6.1372 -8.1321 18 14 -0.5862 3.5072 -8.6129 19 1 -0.7863 2.7765 -7.3357 20 1 -1.7954 3.3594 -9.4624 21 1 0.5904 2.9468 -9.3248 22 6 3.4131 5.2782 -7.9325 23 6 4.1758 5.1930 -6.6056 24 8 3.9158 3.9262 -5.9931 25 6 2.7651 3.4753 -0.6152 26 6 2.7339 3.4029 0.7274 27 7 2.2953 2.1634 1.0922 28 6 2.1336 1.7058 2.4744 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 3.5520 4.3498 -3.1294 35 1 1.8802 4.4747 -2.5020 36 1 0.9629 4.8401 -4.6999 37 1 2.5285 5.7102 -4.8248 38 1 1.4408 1.8867 -5.2515 39 1 3.2135 1.7027 -5.1604 40 1 1.9036 2.8658 -7.5583 41 1 0.6312 3.7296 -6.6577 42 1 -2.2211 5.8015 -8.2262 43 1 3.8256 4.5577 -8.6387 44 1 3.4992 6.2841 -8.3435 45 1 5.2447 5.2942 -6.7930 46 1 3.8442 5.9926 -5.9432 47 1 3.0705 4.3227 -1.2109 48 1 3.0138 4.1952 1.4060 49 1 3.0623 1.2494 2.8171 50 1 1.8892 2.5553 3.1121 51 1 1.3289 0.9721 2.5225 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972552601.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:40 Heat of formation + Delta-G solvation = 17.685016 kcal Electronic energy + Delta-G solvation = -32282.977015 eV Core-core repulsion = 28184.897115 eV Total energy + Delta-G solvation = -4098.079900 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.55752 -40.10883 -38.44935 -36.12304 -34.64759 -33.77483 -33.07480 -31.58974 -31.44291 -29.65272 -28.47461 -28.01154 -26.91193 -25.48777 -23.90672 -23.69014 -22.98675 -21.54449 -21.06618 -20.00838 -19.18949 -18.32349 -17.25634 -17.15785 -16.21774 -16.13485 -15.74650 -15.45501 -15.14762 -14.83771 -14.62411 -14.26089 -14.12915 -14.01621 -13.85223 -13.79466 -13.43660 -13.06141 -12.93829 -12.85369 -12.69771 -12.41776 -12.32445 -12.20457 -12.05768 -11.98058 -11.82854 -11.53044 -11.37596 -11.08193 -11.04273 -11.01352 -10.61396 -10.38444 -10.16819 -9.73617 -9.61632 -9.49383 -9.36191 -8.71787 -8.51101 -8.46397 -8.15418 -7.10227 -6.01847 -3.28840 1.73509 2.33981 2.60596 3.30865 3.31971 3.49551 3.52685 3.67673 4.07408 4.41232 4.48493 4.49284 4.65309 4.74020 4.75900 4.89130 4.90728 4.99122 5.03210 5.20746 5.23700 5.29589 5.33971 5.37829 5.43288 5.53803 5.62561 5.66173 5.73072 5.77562 5.81579 5.85204 5.88179 5.95475 6.06085 6.10515 6.11357 6.15433 6.20459 6.37603 6.42936 6.50653 6.52875 6.55516 6.69017 6.72657 6.96125 7.08778 7.70730 7.77619 7.84242 8.23349 8.50406 8.83049 9.65562 10.01042 11.12969 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015267 B = 0.003121 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.553124 B = 8969.176955 C = 9644.971909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.066 4.066 3 C 0.106 3.894 4 C -0.226 4.226 5 C 0.606 3.394 6 O -0.555 6.555 7 N -0.609 5.609 8 C 0.102 3.898 9 C -0.146 4.146 10 C 0.095 3.905 11 C 0.126 3.874 12 C 0.115 3.885 13 N -0.604 5.604 14 C -0.261 4.261 15 H 0.090 0.910 16 C 0.027 3.973 17 N -0.896 5.896 18 Si 0.863 3.137 19 H -0.286 1.286 20 H -0.300 1.300 21 H -0.271 1.271 22 C 0.112 3.888 23 C 0.044 3.956 24 O -0.372 6.372 25 C -0.170 4.170 26 C -0.023 4.023 27 N -0.446 5.446 28 C 0.068 3.932 29 H 0.061 0.939 30 H 0.046 0.954 31 H 0.063 0.937 32 H 0.108 0.892 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.033 0.967 41 H 0.085 0.915 42 H 0.263 0.737 43 H 0.031 0.969 44 H 0.072 0.928 45 H 0.087 0.913 46 H 0.054 0.946 47 H 0.154 0.846 48 H 0.166 0.834 49 H 0.073 0.927 50 H 0.085 0.915 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.112 -6.203 21.181 23.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.104 4.104 3 C -0.011 4.011 4 C -0.235 4.235 5 C 0.398 3.602 6 O -0.435 6.435 7 N -0.342 5.342 8 C -0.021 4.021 9 C -0.184 4.184 10 C 0.053 3.947 11 C 0.003 3.997 12 C -0.012 4.012 13 N -0.328 5.328 14 C -0.388 4.388 15 H 0.108 0.892 16 C -0.173 4.173 17 N -0.539 5.539 18 Si 0.692 3.308 19 H -0.214 1.214 20 H -0.228 1.228 21 H -0.196 1.196 22 C -0.013 4.013 23 C -0.033 4.033 24 O -0.291 6.291 25 C -0.194 4.194 26 C -0.149 4.149 27 N -0.122 5.122 28 C -0.074 4.074 29 H 0.080 0.920 30 H 0.065 0.935 31 H 0.082 0.918 32 H 0.126 0.874 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.099 0.901 36 H 0.107 0.893 37 H 0.110 0.890 38 H 0.099 0.901 39 H 0.095 0.905 40 H 0.050 0.950 41 H 0.103 0.897 42 H 0.073 0.927 43 H 0.048 0.952 44 H 0.090 0.910 45 H 0.105 0.895 46 H 0.072 0.928 47 H 0.171 0.829 48 H 0.183 0.817 49 H 0.092 0.908 50 H 0.104 0.896 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 8.883 -7.007 21.446 24.247 hybrid contribution -0.396 -0.555 -0.317 0.752 sum 8.488 -7.563 21.129 23.993 Atomic orbital electron populations 1.21658 0.94187 1.01969 1.02019 1.20343 0.96524 0.89328 1.04158 1.20266 1.01213 0.94505 0.85095 1.20033 1.15728 0.96136 0.91647 1.16962 0.76068 0.83845 0.83363 1.90708 1.49985 1.18711 1.84086 1.48221 1.71999 1.07979 1.06001 1.22650 1.00666 0.79898 0.98840 1.23231 1.03018 0.99316 0.92853 1.22306 0.83679 0.93564 0.95116 1.21723 1.02509 0.96108 0.79343 1.21730 0.98684 0.89894 0.90851 1.44420 1.01571 1.24341 1.62492 1.18860 0.86782 0.92304 1.40857 0.89226 1.25067 0.95276 0.96910 1.00042 1.69924 0.98342 1.35315 1.50277 0.87262 0.77285 0.87890 0.78328 1.21372 1.22786 1.19612 1.21611 0.85127 1.00119 0.94492 1.23133 0.99379 0.85651 0.95186 1.87705 1.24159 1.36927 1.80336 1.22481 1.05964 0.97489 0.93479 1.21722 1.08612 0.88232 0.96294 1.43523 1.51072 1.11637 1.05967 1.22077 1.03212 1.01849 0.80237 0.91983 0.93512 0.91784 0.87354 0.91695 0.91373 0.90066 0.89295 0.88955 0.90138 0.90504 0.94959 0.89679 0.92704 0.95154 0.90958 0.89461 0.92801 0.82869 0.81677 0.90808 0.89613 0.89724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.89 37.16 0.37 -1.08 16 2 C -0.07 -0.72 5.39 -27.88 -0.15 -0.87 16 3 C 0.11 1.31 6.14 -81.88 -0.50 0.80 16 4 C -0.23 -3.28 6.17 -103.35 -0.64 -3.92 16 5 C 0.61 10.52 7.82 -12.59 -0.10 10.42 16 6 O -0.55 -10.82 15.14 5.25 0.08 -10.74 16 7 N -0.61 -10.29 3.33 -172.01 -0.57 -10.87 16 8 C 0.10 1.49 5.09 -2.44 -0.01 1.47 16 9 C -0.15 -2.49 5.91 -24.87 -0.15 -2.64 16 10 C 0.10 1.77 0.83 -89.74 -0.07 1.70 16 11 C 0.13 2.28 6.25 -3.33 -0.02 2.26 16 12 C 0.11 2.54 2.98 -3.85 -0.01 2.52 16 13 N -0.60 -14.04 2.78 -172.18 -0.48 -14.52 16 14 C -0.26 -7.04 10.09 -15.06 -0.15 -7.19 16 15 H 0.09 2.55 8.02 -52.49 -0.42 2.13 16 16 C 0.03 0.75 5.15 -17.43 -0.09 0.66 16 17 N -0.90 -26.82 13.97 55.49 0.78 -26.04 16 18 Si 0.86 22.14 24.42 -169.99 -4.15 17.99 16 19 H -0.29 -7.14 6.54 56.52 0.37 -6.77 16 20 H -0.30 -7.83 7.11 56.52 0.40 -7.43 16 21 H -0.27 -6.94 6.87 56.52 0.39 -6.55 16 22 C 0.11 2.15 6.72 -3.53 -0.02 2.12 16 23 C 0.04 0.72 6.76 37.30 0.25 0.97 16 24 O -0.37 -6.72 10.23 -35.23 -0.36 -7.08 16 25 C -0.17 -2.04 9.26 -37.50 -0.35 -2.38 16 26 C -0.02 -0.22 11.34 -16.82 -0.19 -0.41 16 27 N -0.45 -4.28 3.09 -119.88 -0.37 -4.65 16 28 C 0.07 0.36 10.61 59.85 0.63 0.99 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.41 8.13 -51.93 -0.42 -0.01 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.11 1.45 6.35 -51.93 -0.33 1.12 16 33 H 0.06 0.54 7.58 -51.93 -0.39 0.14 16 34 H 0.07 0.91 7.63 -51.93 -0.40 0.52 16 35 H 0.08 1.07 6.17 -51.93 -0.32 0.75 16 36 H 0.09 1.68 7.86 -51.93 -0.41 1.27 16 37 H 0.09 1.54 5.98 -51.93 -0.31 1.23 16 38 H 0.08 1.52 7.79 -51.93 -0.40 1.11 16 39 H 0.08 1.38 8.06 -51.93 -0.42 0.96 16 40 H 0.03 0.74 7.20 -51.93 -0.37 0.36 16 41 H 0.09 2.05 4.30 -51.93 -0.22 1.83 16 42 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 43 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.07 1.31 7.93 -51.93 -0.41 0.90 16 45 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 46 H 0.05 0.85 6.13 -51.93 -0.32 0.54 16 47 H 0.15 1.65 5.21 -52.49 -0.27 1.38 16 48 H 0.17 1.05 8.06 -52.49 -0.42 0.63 16 49 H 0.07 0.30 8.14 -51.92 -0.42 -0.12 16 50 H 0.09 0.29 8.13 -51.93 -0.42 -0.13 16 51 H 0.08 0.38 7.47 -51.93 -0.39 -0.01 16 LS Contribution 386.87 15.07 5.83 5.83 Total: -1.00 -33.80 386.87 -8.40 -42.21 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -7.95 Total: 2.45 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: -1.20 Total: 5.42 kcal Atomic # 7 Polarization: -55.44 SS G_CDS: -0.65 Total: -56.08 kcal Atomic # 8 Polarization: -17.54 SS G_CDS: -0.28 Total: -17.82 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.15 Total: 17.99 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.80 -8.40 -42.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972552601.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.891 kcal (2) G-P(sol) polarization free energy of solvation -33.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds