Wall clock time and date at job start Wed Apr 1 2020 04:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50709 * 109.47121 * 2 1 4 4 C 1.36762 * 125.79897 * 269.99757 * 3 2 1 5 5 C 1.47261 * 126.94468 * 359.97438 * 4 3 2 6 6 O 1.21626 * 119.99980 * 353.28295 * 5 4 3 7 7 N 1.34784 * 120.00049 * 173.27977 * 5 4 3 8 8 C 1.47488 * 125.66480 * 352.26422 * 7 5 4 9 9 C 1.55015 * 104.90068 * 204.00110 * 8 7 5 10 10 C 1.54509 * 101.52232 * 323.62570 * 9 8 7 11 11 C 1.47187 * 125.66353 * 172.24169 * 7 5 4 12 12 C 1.52516 * 110.05914 * 153.10273 * 10 9 8 13 13 N 1.47299 * 108.38354 * 72.02085 * 12 10 9 14 14 C 1.36943 * 121.06145 * 229.38742 * 13 12 10 15 15 H 1.07996 * 120.00343 * 159.82534 * 14 13 12 16 16 C 1.38814 * 119.99460 * 339.82636 * 14 13 12 17 17 N 1.31622 * 119.99573 * 151.98454 * 16 14 13 18 18 Si 1.86795 * 120.00282 * 331.98125 * 16 14 13 19 19 H 1.48501 * 109.47291 * 93.19637 * 18 16 14 20 20 H 1.48505 * 109.47055 * 213.19371 * 18 16 14 21 21 H 1.48503 * 109.47210 * 333.19404 * 18 16 14 22 22 C 1.47174 * 117.88348 * 49.41150 * 13 12 10 23 23 C 1.53278 * 108.54264 * 308.89673 * 22 13 12 24 24 O 1.42082 * 110.33551 * 276.05434 * 10 9 8 25 25 C 1.46692 * 106.11623 * 180.24574 * 4 3 2 26 26 C 1.34488 * 106.32805 * 359.62791 * 25 4 3 27 27 N 1.34657 * 125.79903 * 90.02353 * 3 2 1 28 28 C 1.46498 * 124.85450 * 359.97438 * 27 3 2 29 29 H 1.08998 * 109.47113 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47260 * 300.00093 * 1 2 3 31 31 H 1.08999 * 109.47168 * 60.00134 * 1 2 3 32 32 H 1.08999 * 109.47704 * 239.99608 * 2 1 3 33 33 H 1.09003 * 109.46848 * 119.99193 * 2 1 3 34 34 H 1.09002 * 110.35122 * 85.14456 * 8 7 5 35 35 H 1.08999 * 110.35570 * 322.85926 * 8 7 5 36 36 H 1.08996 * 111.01397 * 81.68184 * 9 8 7 37 37 H 1.08997 * 111.01579 * 205.52928 * 9 8 7 38 38 H 1.08998 * 109.91198 * 59.13902 * 11 7 5 39 39 H 1.09006 * 110.06604 * 297.96533 * 11 7 5 40 40 H 1.08997 * 109.68193 * 191.74342 * 12 10 9 41 41 H 1.08992 * 109.67904 * 312.26257 * 12 10 9 42 42 H 0.96995 * 119.99909 * 180.02562 * 17 16 14 43 43 H 1.09000 * 109.62560 * 68.60947 * 22 13 12 44 44 H 1.08999 * 109.62610 * 188.99028 * 22 13 12 45 45 H 1.08999 * 109.50874 * 172.79739 * 23 22 13 46 46 H 1.09001 * 109.50687 * 292.94528 * 23 22 13 47 47 H 1.07995 * 126.83865 * 179.75011 * 25 4 3 48 48 H 1.08002 * 125.57099 * 180.15993 * 26 25 4 49 49 H 1.09008 * 109.46751 * 90.00351 * 28 27 3 50 50 H 1.08997 * 109.47307 * 210.00390 * 28 27 3 51 51 H 1.08999 * 109.47423 * 330.00850 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2990 2.1751 -1.1092 5 6 2.1540 1.7630 -2.5156 6 8 1.8775 0.6099 -2.7860 7 7 2.3275 2.6638 -3.5031 8 6 2.5045 4.1166 -3.3205 9 6 2.0481 4.7454 -4.6618 10 6 2.5489 3.6971 -5.6804 11 6 2.3723 2.3609 -4.9427 12 6 1.6848 3.7340 -6.9367 13 7 1.9971 4.9672 -7.6793 14 6 1.0015 5.7976 -8.1204 15 1 1.2242 6.8261 -8.3631 16 6 -0.2938 5.3172 -8.2556 17 7 -1.3159 6.1372 -8.1321 18 14 -0.5862 3.5072 -8.6129 19 1 -0.7863 2.7765 -7.3357 20 1 -1.7954 3.3594 -9.4624 21 1 0.5904 2.9468 -9.3248 22 6 3.4131 5.2782 -7.9325 23 6 4.1758 5.1930 -6.6056 24 8 3.9158 3.9262 -5.9931 25 6 2.7651 3.4753 -0.6152 26 6 2.7339 3.4029 0.7274 27 7 2.2953 2.1634 1.0922 28 6 2.1336 1.7058 2.4744 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 3.5520 4.3498 -3.1294 35 1 1.8802 4.4747 -2.5020 36 1 0.9629 4.8401 -4.6999 37 1 2.5285 5.7102 -4.8248 38 1 1.4408 1.8867 -5.2515 39 1 3.2135 1.7027 -5.1604 40 1 1.9036 2.8658 -7.5583 41 1 0.6312 3.7296 -6.6577 42 1 -2.2211 5.8015 -8.2262 43 1 3.8256 4.5577 -8.6387 44 1 3.4992 6.2841 -8.3435 45 1 5.2447 5.2942 -6.7930 46 1 3.8442 5.9926 -5.9432 47 1 3.0705 4.3227 -1.2109 48 1 3.0138 4.1952 1.4060 49 1 3.0623 1.2494 2.8171 50 1 1.8892 2.5553 3.1121 51 1 1.3289 0.9721 2.5225 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972552601.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:39 Heat of formation + Delta-G solvation = -4.617854 kcal Electronic energy + Delta-G solvation = -32283.944140 eV Core-core repulsion = 28184.897115 eV Total energy + Delta-G solvation = -4099.047025 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.41949 -41.50864 -39.80922 -37.56211 -36.40821 -34.62303 -33.90222 -33.64423 -32.78477 -31.03520 -29.57909 -29.24824 -28.11627 -26.73006 -25.49526 -24.93573 -24.04123 -23.00961 -22.22134 -21.05926 -20.71943 -19.33197 -19.09864 -18.22850 -17.81164 -17.22371 -17.09478 -16.54385 -16.41179 -16.15603 -16.05441 -15.79261 -15.52723 -15.40836 -15.12911 -14.82258 -14.49618 -14.31719 -14.18504 -14.00982 -13.86475 -13.74579 -13.65909 -13.48935 -13.25071 -13.20394 -13.00395 -12.74932 -12.67113 -12.51294 -12.33564 -12.26459 -12.19831 -11.90285 -11.86981 -11.60931 -11.30727 -11.04202 -10.89284 -10.44482 -9.78569 -9.48857 -9.08602 -9.04709 -8.22055 -5.43567 0.71540 1.23494 1.35988 1.42003 1.53369 1.79419 2.17331 2.35829 2.50515 2.64076 2.87113 3.20963 3.49551 3.59063 3.70743 3.77835 3.98467 3.99203 4.09684 4.12145 4.23763 4.30121 4.33928 4.35691 4.41818 4.46807 4.47553 4.49453 4.56734 4.58645 4.60247 4.64696 4.69214 4.72716 4.77029 4.87120 4.94262 4.97920 5.01954 5.03010 5.09926 5.21724 5.24706 5.28247 5.31742 5.74308 5.80021 6.06476 6.12229 6.26591 6.38980 6.57032 6.78995 7.21814 7.54741 7.95588 8.96191 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015267 B = 0.003121 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.553124 B = 8969.176955 C = 9644.971909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.063 4.063 3 C 0.101 3.899 4 C -0.266 4.266 5 C 0.597 3.403 6 O -0.590 6.590 7 N -0.614 5.614 8 C 0.114 3.886 9 C -0.142 4.142 10 C 0.105 3.895 11 C 0.129 3.871 12 C 0.113 3.887 13 N -0.616 5.616 14 C -0.240 4.240 15 H 0.072 0.928 16 C -0.022 4.022 17 N -0.938 5.938 18 Si 0.912 3.088 19 H -0.283 1.283 20 H -0.306 1.306 21 H -0.270 1.270 22 C 0.105 3.895 23 C 0.049 3.951 24 O -0.373 6.373 25 C -0.191 4.191 26 C -0.006 4.006 27 N -0.439 5.439 28 C 0.058 3.942 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.028 0.972 32 H 0.077 0.923 33 H 0.096 0.904 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.063 0.937 37 H 0.101 0.899 38 H 0.062 0.938 39 H 0.076 0.924 40 H 0.025 0.975 41 H 0.060 0.940 42 H 0.261 0.739 43 H 0.035 0.965 44 H 0.081 0.919 45 H 0.128 0.872 46 H 0.062 0.938 47 H 0.161 0.839 48 H 0.205 0.795 49 H 0.089 0.911 50 H 0.110 0.890 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.333 -6.009 24.563 27.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.101 4.101 3 C -0.018 4.018 4 C -0.276 4.276 5 C 0.391 3.609 6 O -0.473 6.473 7 N -0.347 5.347 8 C -0.007 4.007 9 C -0.180 4.180 10 C 0.063 3.937 11 C 0.005 3.995 12 C -0.013 4.013 13 N -0.341 5.341 14 C -0.369 4.369 15 H 0.090 0.910 16 C -0.218 4.218 17 N -0.584 5.584 18 Si 0.742 3.258 19 H -0.211 1.211 20 H -0.235 1.235 21 H -0.195 1.195 22 C -0.020 4.020 23 C -0.028 4.028 24 O -0.292 6.292 25 C -0.215 4.215 26 C -0.133 4.133 27 N -0.114 5.114 28 C -0.082 4.082 29 H 0.093 0.907 30 H 0.085 0.915 31 H 0.047 0.953 32 H 0.096 0.904 33 H 0.115 0.885 34 H 0.108 0.892 35 H 0.115 0.885 36 H 0.082 0.918 37 H 0.119 0.881 38 H 0.080 0.920 39 H 0.094 0.906 40 H 0.043 0.957 41 H 0.078 0.922 42 H 0.070 0.930 43 H 0.053 0.947 44 H 0.099 0.901 45 H 0.146 0.854 46 H 0.080 0.920 47 H 0.179 0.821 48 H 0.222 0.778 49 H 0.108 0.892 50 H 0.129 0.871 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 11.157 -6.816 24.858 28.086 hybrid contribution -0.998 -0.587 -1.318 1.755 sum 10.159 -7.403 23.539 26.685 Atomic orbital electron populations 1.21604 0.93867 1.02595 1.01180 1.20300 0.96721 0.88964 1.04162 1.20398 1.00754 0.94942 0.85661 1.20039 1.18731 0.98382 0.90424 1.17560 0.75280 0.83425 0.84652 1.90673 1.51688 1.20150 1.84806 1.48307 1.72125 1.09004 1.05240 1.22696 1.02117 0.78261 0.97657 1.23149 1.01455 0.99467 0.93954 1.21997 0.83653 0.94399 0.93614 1.21550 1.01576 0.95771 0.80616 1.21664 0.98187 0.89114 0.92304 1.44548 1.02759 1.24082 1.62671 1.18870 0.87464 0.92042 1.38487 0.91047 1.25490 0.95485 0.99426 1.01387 1.70002 0.98589 1.36723 1.53104 0.86460 0.76675 0.84728 0.77975 1.21081 1.23478 1.19507 1.21883 0.82825 1.00666 0.96613 1.23259 1.01225 0.85060 0.93248 1.87722 1.23075 1.38038 1.80321 1.22619 1.07259 0.96794 0.94788 1.22305 1.06189 0.88718 0.96056 1.43831 1.49359 1.11251 1.06959 1.22457 1.04512 1.03336 0.77892 0.90690 0.91538 0.95259 0.90416 0.88523 0.89241 0.88471 0.91836 0.88101 0.91966 0.90569 0.95717 0.92151 0.92962 0.94735 0.90105 0.85382 0.92005 0.82142 0.77801 0.89211 0.87135 0.88870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.69 9.89 71.98 0.71 -1.97 16 2 C -0.06 -1.33 5.39 29.85 0.16 -1.17 16 3 C 0.10 2.36 6.14 41.78 0.26 2.61 16 4 C -0.27 -7.58 6.17 -19.04 -0.12 -7.70 16 5 C 0.60 21.25 7.82 86.61 0.68 21.92 16 6 O -0.59 -24.24 15.14 -4.11 -0.06 -24.30 16 7 N -0.61 -20.94 3.33 -816.35 -2.72 -23.66 16 8 C 0.11 3.20 5.09 86.88 0.44 3.64 16 9 C -0.14 -4.78 5.91 31.80 0.19 -4.59 16 10 C 0.11 3.89 0.83 -10.22 -0.01 3.89 16 11 C 0.13 4.75 6.25 86.47 0.54 5.29 16 12 C 0.11 5.07 2.98 86.07 0.26 5.33 16 13 N -0.62 -28.55 2.78 -698.65 -1.94 -30.49 16 14 C -0.24 -13.14 10.09 84.03 0.85 -12.29 16 15 H 0.07 4.13 8.02 -2.91 -0.02 4.11 16 16 C -0.02 -1.28 5.15 84.86 0.44 -0.84 16 17 N -0.94 -57.89 13.97 21.65 0.30 -57.59 16 18 Si 0.91 47.31 24.42 68.60 1.68 48.99 16 19 H -0.28 -14.39 6.54 99.48 0.65 -13.74 16 20 H -0.31 -16.07 7.11 99.48 0.71 -15.36 16 21 H -0.27 -13.77 6.87 99.48 0.68 -13.09 16 22 C 0.10 3.82 6.72 86.34 0.58 4.40 16 23 C 0.05 1.44 6.76 72.08 0.49 1.93 16 24 O -0.37 -12.69 10.23 -148.98 -1.52 -14.21 16 25 C -0.19 -4.15 9.26 23.62 0.22 -3.93 16 26 C -0.01 -0.10 11.34 83.12 0.94 0.84 16 27 N -0.44 -6.95 3.09 -533.19 -1.65 -8.59 16 28 C 0.06 0.35 10.61 127.77 1.36 1.70 16 29 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.07 1.03 8.13 -2.39 -0.02 1.02 16 31 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.08 2.15 6.35 -2.39 -0.02 2.13 16 33 H 0.10 1.36 7.58 -2.39 -0.02 1.34 16 34 H 0.09 2.16 7.63 -2.39 -0.02 2.14 16 35 H 0.10 2.43 6.17 -2.39 -0.01 2.42 16 36 H 0.06 2.46 7.86 -2.39 -0.02 2.44 16 37 H 0.10 3.20 5.98 -2.39 -0.01 3.18 16 38 H 0.06 2.49 7.79 -2.39 -0.02 2.47 16 39 H 0.08 2.78 8.06 -2.38 -0.02 2.76 16 40 H 0.03 1.14 7.20 -2.39 -0.02 1.13 16 41 H 0.06 3.00 4.30 -2.39 -0.01 2.99 16 42 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 43 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 44 H 0.08 2.80 7.93 -2.39 -0.02 2.78 16 45 H 0.13 2.82 8.14 -2.39 -0.02 2.80 16 46 H 0.06 1.76 6.13 -2.39 -0.01 1.75 16 47 H 0.16 3.05 5.21 -2.91 -0.02 3.03 16 48 H 0.21 1.47 8.06 -2.91 -0.02 1.45 16 49 H 0.09 0.32 8.14 -2.38 -0.02 0.30 16 50 H 0.11 0.17 8.13 -2.39 -0.02 0.15 16 51 H 0.09 0.44 7.47 -2.39 -0.02 0.42 16 Total: -1.00 -77.14 386.87 2.91 -74.22 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: 0.86 Total: 16.57 kcal Atomic # 6 Polarization: 11.08 SS G_CDS: 7.98 Total: 19.06 kcal Atomic # 7 Polarization: -114.32 SS G_CDS: -6.01 Total: -120.33 kcal Atomic # 8 Polarization: -36.93 SS G_CDS: -1.59 Total: -38.51 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 1.68 Total: 48.99 kcal Total: -77.14 2.91 -74.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972552601.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.605 kcal (2) G-P(sol) polarization free energy of solvation -77.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds