Wall clock time and date at job start Wed Apr 1 2020 05:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50703 * 109.47085 * 2 1 4 4 N 1.30020 * 127.33399 * 269.96413 * 3 2 1 5 5 O 1.20659 * 112.30078 * 180.02562 * 4 3 2 6 6 C 1.33492 * 113.15736 * 359.70852 * 5 4 3 7 7 C 1.50696 * 126.83032 * 180.31257 * 6 5 4 8 8 C 1.37362 * 106.33812 * 0.45849 * 6 5 4 9 9 C 1.47400 * 128.56170 * 179.85794 * 8 6 5 10 10 O 1.21610 * 119.99548 * 269.67390 * 9 8 6 11 11 N 1.34776 * 120.00646 * 89.67501 * 9 8 6 12 12 C 1.46490 * 120.00704 * 180.02562 * 11 9 8 13 13 H 1.09002 * 109.03086 * 33.95886 * 12 11 9 14 14 C 1.52524 * 109.04588 * 275.00143 * 12 11 9 15 15 C 1.53817 * 111.70409 * 293.55558 * 14 12 11 16 16 C 1.51623 * 107.02652 * 302.46024 * 15 14 12 17 17 H 1.09002 * 111.26930 * 304.34379 * 16 15 14 18 18 C 1.53071 * 116.66395 * 176.23597 * 16 15 14 19 19 N 1.48660 * 103.43779 * 204.12744 * 18 16 15 20 20 C 1.36937 * 125.77640 * 204.40878 * 19 18 16 21 21 H 1.08005 * 119.99398 * 179.97438 * 20 19 18 22 22 C 1.38809 * 120.00808 * 359.96616 * 20 19 18 23 23 N 1.31622 * 119.99175 * 359.97438 * 22 20 19 24 24 Si 1.86790 * 120.00398 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47456 * 89.99829 * 24 22 20 26 26 H 1.48506 * 109.47183 * 209.99631 * 24 22 20 27 27 H 1.48497 * 109.47357 * 329.99595 * 24 22 20 28 28 C 1.48238 * 108.43755 * 24.38008 * 19 18 16 29 29 C 1.52328 * 105.86236 * 3.18177 * 28 19 18 30 30 H 1.09002 * 109.87746 * 87.66753 * 29 28 19 31 31 C 1.51438 * 117.46297 * 214.19699 * 29 28 19 32 32 H 1.09004 * 109.47498 * 299.99609 * 1 2 3 33 33 H 1.08997 * 109.47591 * 60.00191 * 1 2 3 34 34 H 1.09002 * 109.47223 * 180.02562 * 1 2 3 35 35 H 1.09004 * 109.47498 * 240.00391 * 2 1 3 36 36 H 1.08997 * 109.47591 * 119.99809 * 2 1 3 37 37 H 1.09001 * 109.47271 * 270.17246 * 7 6 5 38 38 H 1.08997 * 109.47112 * 30.17461 * 7 6 5 39 39 H 1.08999 * 109.46857 * 150.16969 * 7 6 5 40 40 H 0.97008 * 119.99667 * 359.97438 * 11 9 8 41 41 H 1.08994 * 109.03892 * 172.98529 * 14 12 11 42 42 H 1.09001 * 109.03330 * 54.12755 * 14 12 11 43 43 H 1.09004 * 109.94166 * 183.07610 * 15 14 12 44 44 H 1.08997 * 110.01257 * 61.88076 * 15 14 12 45 45 H 1.08995 * 110.62577 * 85.64047 * 18 16 15 46 46 H 1.08996 * 110.62828 * 322.61806 * 18 16 15 47 47 H 0.97007 * 119.99750 * 180.02562 * 23 22 20 48 48 H 1.08998 * 110.17008 * 244.08803 * 28 19 18 49 49 H 1.09000 * 110.17603 * 122.28125 * 28 19 18 50 50 H 1.09004 * 109.94103 * 298.67391 * 31 29 28 51 51 H 1.09002 * 109.94134 * 59.90382 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2957 2.1641 -1.0338 5 8 2.6844 3.2626 -0.7208 6 6 2.7410 3.4427 0.6007 7 6 3.1739 4.6916 1.3244 8 6 2.3294 2.2621 1.1695 9 6 2.2090 1.9238 2.5991 10 8 3.1522 1.4330 3.1893 11 7 1.0536 2.1585 3.2522 12 6 0.9341 1.8229 4.6732 13 1 1.8970 1.9829 5.1584 14 6 0.5477 0.3535 4.8067 15 6 -0.8643 0.0846 4.2592 16 6 -1.8157 0.9842 5.0237 17 1 -1.7317 0.8258 6.0989 18 6 -3.2834 0.9586 4.5897 19 7 -3.8001 2.2775 5.0410 20 6 -5.1080 2.5720 5.3200 21 1 -5.3806 3.5659 5.6431 22 6 -6.0835 1.5933 5.1875 23 7 -5.7512 0.3823 4.7931 24 14 -7.8674 1.9950 5.5687 25 1 -8.5397 2.4808 4.3370 26 1 -8.5557 0.7740 6.0595 27 1 -7.9252 3.0493 6.6129 28 6 -2.6597 3.2194 5.1385 29 6 -1.4396 2.4478 4.6523 30 1 -1.3471 2.5440 3.5705 31 6 -0.1112 2.7540 5.3118 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8899 34 1 -0.3634 -1.0277 0.0005 35 1 1.8933 -0.5138 -0.8900 36 1 1.8933 -0.5138 0.8899 37 1 4.2489 4.6552 1.5009 38 1 2.9347 5.5647 0.7174 39 1 2.6511 4.7582 2.2786 40 1 0.3014 2.5504 2.7815 41 1 0.5805 0.0714 5.8590 42 1 1.2647 -0.2542 4.2546 43 1 -1.1319 -0.9601 4.4180 44 1 -0.9033 0.3205 3.1958 45 1 -3.8163 0.1473 5.0855 46 1 -3.3620 0.8656 3.5066 47 1 -6.4329 -0.3015 4.7001 48 1 -2.5185 3.5329 6.1728 49 1 -2.8335 4.0873 4.5024 50 1 0.1534 3.7986 5.1474 51 1 -0.1705 2.5484 6.3806 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980244934.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:44:51 Heat of formation + Delta-G solvation = 35.577871 kcal Electronic energy + Delta-G solvation = -32150.710261 eV Core-core repulsion = 28053.406253 eV Total energy + Delta-G solvation = -4097.304008 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -45.07521 -40.41687 -38.74084 -35.73326 -35.48563 -33.95286 -33.19296 -31.92070 -31.50743 -30.69698 -29.03052 -28.21709 -26.38943 -25.38643 -24.87817 -24.00467 -22.03821 -21.29628 -20.66439 -20.07722 -19.82513 -18.99149 -18.18439 -17.93888 -16.77139 -16.59740 -16.01932 -15.33505 -15.02793 -14.83568 -14.63326 -14.27010 -14.15787 -13.93304 -13.69448 -13.64064 -13.51158 -13.24950 -13.01962 -12.78823 -12.71519 -12.45242 -12.15193 -12.00601 -11.79338 -11.69745 -11.52252 -11.23216 -11.09225 -11.05437 -10.87771 -10.77864 -10.67486 -10.29890 -10.10456 -10.07431 -9.96884 -9.86102 -9.61419 -9.58248 -9.30862 -9.02556 -8.67173 -6.84812 -5.66184 -3.07055 1.07661 1.71653 2.25369 2.60961 3.15330 3.38737 3.43881 3.45693 3.85382 4.01452 4.46379 4.54612 4.64211 4.78197 4.83566 4.89125 4.97657 5.00900 5.04262 5.06433 5.15629 5.23561 5.28295 5.29679 5.49804 5.52796 5.60005 5.61070 5.65214 5.68603 5.70547 5.76707 5.82643 5.95772 6.04376 6.10202 6.12055 6.20026 6.21143 6.32647 6.43127 6.54452 6.60089 6.62605 6.81134 6.98429 7.34377 7.51668 7.60157 7.84427 8.01060 8.01609 8.32093 9.19185 9.80527 10.46862 11.38172 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014123 B = 0.002859 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.093927 B = 9792.755319 C =10167.748835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.048 4.048 3 C 0.062 3.938 4 N -0.355 5.355 5 O 0.095 5.905 6 C 0.016 3.984 7 C -0.078 4.078 8 C -0.251 4.251 9 C 0.600 3.400 10 O -0.530 6.530 11 N -0.707 5.707 12 C 0.150 3.850 13 H 0.086 0.914 14 C -0.127 4.127 15 C -0.099 4.099 16 C -0.114 4.114 17 H 0.071 0.929 18 C 0.164 3.836 19 N -0.608 5.608 20 C -0.221 4.221 21 H 0.076 0.924 22 C -0.011 4.011 23 N -0.922 5.922 24 Si 0.913 3.087 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.282 1.282 28 C 0.143 3.857 29 C -0.107 4.107 30 H 0.062 0.938 31 C -0.110 4.110 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.403 0.597 41 H 0.070 0.930 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.058 0.942 45 H 0.104 0.896 46 H 0.011 0.989 47 H 0.251 0.749 48 H 0.023 0.977 49 H 0.022 0.978 50 H 0.067 0.933 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.217 3.987 -6.008 19.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.086 4.086 3 C -0.101 4.101 4 N -0.061 5.061 5 O 0.034 5.966 6 C -0.047 4.047 7 C -0.136 4.136 8 C -0.258 4.258 9 C 0.384 3.616 10 O -0.406 6.406 11 N -0.360 5.360 12 C 0.047 3.953 13 H 0.104 0.896 14 C -0.165 4.165 15 C -0.137 4.137 16 C -0.134 4.134 17 H 0.089 0.911 18 C 0.040 3.960 19 N -0.334 5.334 20 C -0.350 4.350 21 H 0.094 0.906 22 C -0.207 4.207 23 N -0.571 5.571 24 Si 0.743 3.257 25 H -0.217 1.217 26 H -0.217 1.217 27 H -0.207 1.207 28 C 0.018 3.982 29 C -0.126 4.126 30 H 0.080 0.920 31 C -0.148 4.148 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.104 0.896 36 H 0.107 0.893 37 H 0.113 0.887 38 H 0.110 0.890 39 H 0.112 0.888 40 H 0.240 0.760 41 H 0.089 0.911 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.077 0.923 45 H 0.121 0.879 46 H 0.029 0.971 47 H 0.062 0.938 48 H 0.041 0.959 49 H 0.040 0.960 50 H 0.086 0.914 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 18.613 3.380 -6.868 20.126 hybrid contribution -1.342 0.333 0.570 1.496 sum 17.271 3.714 -6.299 18.755 Atomic orbital electron populations 1.21749 0.92942 1.03094 1.02777 1.20036 0.97042 0.87327 1.04214 1.24782 1.00090 0.98803 0.86384 1.73612 1.16575 0.92528 1.23337 1.84534 1.62776 1.26758 1.22536 1.24611 0.98892 0.97389 0.83854 1.20461 1.03136 0.90681 0.99289 1.21959 1.13172 0.95196 0.95481 1.16858 0.82939 0.77977 0.83785 1.90814 1.38635 1.43423 1.67774 1.46280 1.14378 1.63386 1.11908 1.21174 0.99614 0.94815 0.79722 0.89612 1.21915 0.97657 0.95050 1.01876 1.21261 0.93238 0.99875 0.99338 1.22388 0.98011 0.93298 0.99673 0.91106 1.21630 0.87465 0.90401 0.96525 1.45112 1.02266 1.06867 1.79155 1.19082 0.81905 0.96252 1.37745 0.90609 1.24759 0.98080 0.95909 1.01942 1.69816 1.31442 1.02349 1.53451 0.86101 0.84695 0.77007 0.77871 1.21706 1.21678 1.20749 1.20965 0.87220 0.92702 0.97318 1.21776 0.93589 0.98182 0.99099 0.91981 1.21609 0.94138 0.98392 1.00648 0.91914 0.92242 0.91041 0.89574 0.89315 0.88690 0.89024 0.88799 0.76036 0.91118 0.91944 0.91829 0.92308 0.87870 0.97101 0.93818 0.95926 0.95961 0.91400 0.90106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.89 37.15 0.37 -1.13 16 2 C -0.05 -0.50 6.54 -27.89 -0.18 -0.68 16 3 C 0.06 0.75 6.84 -79.77 -0.55 0.20 16 4 N -0.35 -4.52 12.01 34.78 0.42 -4.10 16 5 O 0.10 1.09 11.06 18.65 0.21 1.29 16 6 C 0.02 0.16 7.55 -34.63 -0.26 -0.10 16 7 C -0.08 -0.48 10.33 36.00 0.37 -0.11 16 8 C -0.25 -2.96 6.24 -102.89 -0.64 -3.60 16 9 C 0.60 7.56 7.55 -12.53 -0.09 7.46 16 10 O -0.53 -8.30 16.74 5.27 0.09 -8.22 16 11 N -0.71 -7.93 4.64 -54.69 -0.25 -8.18 16 12 C 0.15 1.74 2.71 -67.73 -0.18 1.55 16 13 H 0.09 1.01 7.52 -51.93 -0.39 0.62 16 14 C -0.13 -1.56 5.44 -26.55 -0.14 -1.71 16 15 C -0.10 -1.41 5.57 -27.00 -0.15 -1.56 16 16 C -0.11 -1.96 2.49 -89.89 -0.22 -2.19 16 17 H 0.07 1.27 8.06 -51.93 -0.42 0.85 16 18 C 0.16 3.78 5.52 -2.81 -0.02 3.76 16 19 N -0.61 -15.03 3.45 -170.42 -0.59 -15.61 16 20 C -0.22 -6.07 10.30 -15.06 -0.16 -6.22 16 21 H 0.08 2.01 7.83 -52.48 -0.41 1.60 16 22 C -0.01 -0.32 5.49 -17.43 -0.10 -0.41 16 23 N -0.92 -26.41 10.11 55.49 0.56 -25.85 16 24 Si 0.91 21.83 29.55 -169.99 -5.02 16.80 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 27 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 28 C 0.14 2.80 6.98 -3.43 -0.02 2.78 16 29 C -0.11 -1.65 2.21 -90.36 -0.20 -1.85 16 30 H 0.06 0.93 6.11 -51.93 -0.32 0.61 16 31 C -0.11 -1.30 5.39 -27.07 -0.15 -1.45 16 32 H 0.06 0.69 8.05 -51.93 -0.42 0.27 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.09 0.55 8.11 -51.93 -0.42 0.13 16 40 H 0.40 4.34 6.79 -40.82 -0.28 4.06 16 41 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.06 0.80 8.13 -51.93 -0.42 0.38 16 43 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.06 0.83 7.76 -51.93 -0.40 0.43 16 45 H 0.10 2.73 5.93 -51.93 -0.31 2.43 16 46 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 47 H 0.25 7.01 8.31 -40.82 -0.34 6.68 16 48 H 0.02 0.44 8.08 -51.93 -0.42 0.02 16 49 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 50 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 51 H 0.08 0.96 8.06 -51.93 -0.42 0.54 16 LS Contribution 404.23 15.07 6.09 6.09 Total: -1.00 -32.09 404.23 -9.24 -41.33 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -8.41 Total: 1.69 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: -2.33 Total: -5.24 kcal Atomic # 7 Polarization: -53.88 SS G_CDS: 0.14 Total: -53.75 kcal Atomic # 8 Polarization: -7.22 SS G_CDS: 0.29 Total: -6.92 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.09 -9.24 -41.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980244934.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.903 kcal (2) G-P(sol) polarization free energy of solvation -32.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds