Wall clock time and date at job start Wed Apr 1 2020 05:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47466 * 2 1 4 4 O 1.33494 * 126.83048 * 269.68541 * 3 2 1 5 5 N 1.20654 * 113.15450 * 179.81545 * 4 3 2 6 6 C 1.30020 * 112.30662 * 0.46612 * 5 4 3 7 7 C 1.50695 * 127.33758 * 179.68590 * 6 5 4 8 8 C 1.37365 * 126.82874 * 89.99772 * 3 2 1 9 9 C 1.47396 * 128.56348 * 359.97438 * 8 3 2 10 10 O 1.21610 * 119.99857 * 89.99670 * 9 8 3 11 11 N 1.34775 * 120.00357 * 270.00098 * 9 8 3 12 12 C 1.46499 * 120.00279 * 180.02562 * 11 9 8 13 13 H 1.08999 * 109.73592 * 34.34248 * 12 11 9 14 14 C 1.53328 * 109.73412 * 273.63411 * 12 11 9 15 15 C 1.52939 * 107.72093 * 175.23461 * 14 12 11 16 16 C 1.53006 * 110.46654 * 63.73492 * 15 14 12 17 17 H 1.08995 * 112.08075 * 72.28450 * 16 15 14 18 18 C 1.55345 * 106.41655 * 196.16328 * 16 15 14 19 19 N 1.47174 * 106.96495 * 91.60226 * 18 16 15 20 20 C 1.36936 * 125.64842 * 180.93152 * 19 18 16 21 21 H 1.08008 * 119.99868 * 180.02562 * 20 19 18 22 22 C 1.38810 * 120.00249 * 0.02562 * 20 19 18 23 23 N 1.31618 * 120.00036 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00114 * 180.02562 * 22 20 19 25 25 H 1.48509 * 109.47006 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47027 * 119.99810 * 24 22 20 27 27 H 1.48494 * 109.47265 * 240.00166 * 24 22 20 28 28 C 1.47288 * 108.39437 * 0.36026 * 19 18 16 29 29 C 1.53906 * 104.31477 * 24.34429 * 28 19 18 30 30 H 1.09002 * 109.21017 * 76.12640 * 29 28 19 31 31 C 1.50739 * 113.02388 * 197.98120 * 29 28 19 32 32 H 1.09002 * 109.47153 * 59.99773 * 1 2 3 33 33 H 1.09001 * 109.46832 * 299.99964 * 1 2 3 34 34 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 35 35 H 1.09002 * 109.47153 * 120.00227 * 2 1 3 36 36 H 1.08998 * 109.47533 * 239.99856 * 2 1 3 37 37 H 1.08999 * 109.47220 * 270.04311 * 7 6 5 38 38 H 1.09005 * 109.47082 * 30.04801 * 7 6 5 39 39 H 1.08999 * 109.47037 * 150.04349 * 7 6 5 40 40 H 0.97004 * 119.99822 * 359.97438 * 11 9 8 41 41 H 1.08994 * 109.68121 * 295.95124 * 14 12 11 42 42 H 1.08998 * 109.68154 * 56.49748 * 14 12 11 43 43 H 1.09001 * 110.30161 * 302.96163 * 15 14 12 44 44 H 1.08996 * 108.61175 * 183.42648 * 15 14 12 45 45 H 1.08996 * 109.96737 * 210.97961 * 18 16 15 46 46 H 1.09001 * 109.96170 * 332.22799 * 18 16 15 47 47 H 0.96996 * 120.00256 * 180.02562 * 23 22 20 48 48 H 1.08996 * 110.85416 * 265.38418 * 28 19 18 49 49 H 1.08996 * 109.92272 * 142.83577 * 28 19 18 50 50 H 1.08997 * 109.02294 * 304.52941 * 31 29 28 51 51 H 1.09002 * 109.02219 * 185.69941 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.3047 2.1732 -1.0685 5 7 2.6907 3.2802 -0.7832 6 6 2.7555 3.4643 0.5022 7 6 3.1971 4.7101 1.2260 8 6 2.3069 2.1971 1.0995 9 6 2.1824 1.8468 2.5258 10 8 3.1238 1.3508 3.1145 11 7 1.0252 2.0761 3.1776 12 6 0.9017 1.7285 4.5954 13 1 1.8561 1.8867 5.0977 14 6 0.4796 0.2610 4.7338 15 6 0.4811 -0.0854 6.2234 16 6 -0.5653 0.7469 6.9673 17 1 -1.5815 0.4220 6.7442 18 6 -0.2154 0.6444 8.4773 19 7 0.6735 1.7749 8.7899 20 6 1.2269 2.0403 10.0141 21 1 1.8689 2.8994 10.1417 22 6 0.9629 1.2051 11.0909 23 7 0.1809 0.1579 10.9353 24 14 1.7173 1.5675 12.7609 25 1 2.5507 2.7935 12.6721 26 1 0.6364 1.7756 13.7577 27 1 2.5640 0.4221 13.1807 28 6 0.8756 2.5609 7.5608 29 6 -0.3638 2.2506 6.7026 30 1 -1.2186 2.8015 7.0947 31 6 -0.1746 2.5955 5.2475 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 0.5138 0.8900 34 1 -0.3634 -1.0277 -0.0005 35 1 1.8933 -0.5139 0.8900 36 1 1.8934 -0.5138 -0.8899 37 1 4.2722 4.6673 1.4002 38 1 2.9616 5.5851 0.6201 39 1 2.6767 4.7790 2.1813 40 1 0.2744 2.4721 2.7081 41 1 -0.5127 0.1224 4.3046 42 1 1.1960 -0.3774 4.2167 43 1 1.4635 0.1060 6.6552 44 1 0.2422 -1.1430 6.3349 45 1 -1.1243 0.7093 9.0753 46 1 0.2958 -0.2973 8.6777 47 1 -0.0039 -0.4255 11.6878 48 1 1.7844 2.2494 7.0460 49 1 0.9168 3.6231 7.8018 50 1 0.1149 3.6431 5.1654 51 1 -1.1177 2.4466 4.7216 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980258577.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:57 Heat of formation + Delta-G solvation = 30.334710 kcal Electronic energy + Delta-G solvation = -31580.083767 eV Core-core repulsion = 27482.552398 eV Total energy + Delta-G solvation = -4097.531368 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -45.15910 -40.23209 -38.88403 -35.64194 -35.20028 -34.82251 -33.41423 -31.66176 -31.01737 -30.49115 -29.15106 -28.86455 -26.26109 -25.36269 -24.50298 -23.92919 -22.21631 -21.73299 -20.94175 -20.11526 -19.89844 -18.66676 -18.03186 -17.74934 -16.86910 -16.50176 -16.46395 -15.48166 -15.09407 -14.77457 -14.63608 -14.18470 -13.92538 -13.85033 -13.72311 -13.60913 -13.57221 -13.43981 -13.24190 -12.90058 -12.57072 -12.41133 -12.11461 -12.04386 -11.91880 -11.68602 -11.63541 -11.25768 -11.12651 -11.03451 -10.98907 -10.68500 -10.57552 -10.38591 -10.15706 -9.97574 -9.88185 -9.70568 -9.64981 -9.55346 -9.44487 -9.04082 -8.57118 -6.78170 -5.68346 -3.01095 1.00145 1.62098 2.24147 2.51369 3.08171 3.41472 3.47195 3.49426 3.81221 3.91364 4.45895 4.50709 4.52500 4.67706 4.75239 4.83732 4.88520 4.91997 5.11541 5.16739 5.25804 5.30383 5.36044 5.38219 5.39100 5.44234 5.50664 5.53522 5.58039 5.69791 5.70855 5.72944 5.77724 5.80954 5.91786 6.03846 6.15206 6.21091 6.32949 6.42341 6.44439 6.53756 6.63391 6.80280 6.93058 7.02563 7.31881 7.60340 7.65720 7.86383 7.92529 8.01065 8.28867 9.25392 9.85999 10.52890 11.43387 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019923 B = 0.002402 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.108279 B =11654.279771 C =12338.442898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.049 4.049 3 C 0.021 3.979 4 O 0.096 5.904 5 N -0.357 5.357 6 C 0.055 3.945 7 C -0.079 4.079 8 C -0.248 4.248 9 C 0.598 3.402 10 O -0.519 6.519 11 N -0.712 5.712 12 C 0.142 3.858 13 H 0.097 0.903 14 C -0.123 4.123 15 C -0.104 4.104 16 C -0.113 4.113 17 H 0.072 0.928 18 C 0.182 3.818 19 N -0.605 5.605 20 C -0.224 4.224 21 H 0.077 0.923 22 C -0.010 4.010 23 N -0.922 5.922 24 Si 0.910 3.090 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.291 1.291 28 C 0.140 3.860 29 C -0.093 4.093 30 H 0.073 0.927 31 C -0.106 4.106 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.100 0.900 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.398 0.602 41 H 0.062 0.938 42 H 0.059 0.941 43 H 0.072 0.928 44 H 0.058 0.942 45 H 0.039 0.961 46 H 0.048 0.952 47 H 0.251 0.749 48 H 0.020 0.980 49 H 0.035 0.965 50 H 0.064 0.936 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.219 2.544 -24.461 24.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.087 4.087 3 C -0.042 4.042 4 O 0.035 5.965 5 N -0.064 5.064 6 C -0.107 4.107 7 C -0.136 4.136 8 C -0.255 4.255 9 C 0.381 3.619 10 O -0.394 6.394 11 N -0.362 5.362 12 C 0.039 3.961 13 H 0.115 0.885 14 C -0.161 4.161 15 C -0.142 4.142 16 C -0.132 4.132 17 H 0.091 0.909 18 C 0.057 3.943 19 N -0.331 5.331 20 C -0.353 4.353 21 H 0.095 0.905 22 C -0.206 4.206 23 N -0.570 5.570 24 Si 0.741 3.259 25 H -0.206 1.206 26 H -0.218 1.218 27 H -0.218 1.218 28 C 0.014 3.986 29 C -0.113 4.113 30 H 0.091 0.909 31 C -0.145 4.145 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.093 0.907 35 H 0.119 0.881 36 H 0.114 0.886 37 H 0.105 0.895 38 H 0.101 0.899 39 H 0.103 0.897 40 H 0.232 0.768 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.091 0.909 44 H 0.077 0.923 45 H 0.057 0.943 46 H 0.066 0.934 47 H 0.061 0.939 48 H 0.037 0.963 49 H 0.053 0.947 50 H 0.082 0.918 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.261 2.859 -24.843 25.039 hybrid contribution -0.036 0.068 1.424 1.426 sum -1.297 2.927 -23.419 23.637 Atomic orbital electron populations 1.21791 0.92720 1.03345 1.02873 1.20285 0.97163 0.85811 1.05470 1.24679 0.98135 0.96309 0.85122 1.84528 1.61630 1.17384 1.32981 1.73619 1.17572 0.98585 1.16607 1.24772 1.00347 0.96598 0.88991 1.20241 1.02639 0.91138 0.99584 1.21996 1.12713 0.95527 0.95301 1.16848 0.82996 0.78221 0.83793 1.90871 1.38446 1.42705 1.67385 1.46123 1.14311 1.63577 1.12191 1.21240 1.00965 0.95082 0.78829 0.88463 1.21970 1.00807 0.95249 0.98121 1.21546 1.00661 0.99370 0.92660 1.22481 0.97687 0.93645 0.99430 0.90919 1.21461 0.94196 0.91488 0.87117 1.44448 1.55608 1.28317 1.04771 1.19100 1.23059 1.08307 0.84804 0.90491 1.24785 1.00167 0.97530 0.98093 1.69966 1.40612 1.16548 1.29886 0.86063 0.78303 0.77383 0.84149 1.20552 1.21838 1.21797 1.21394 0.94181 0.95084 0.87987 1.21378 1.00132 0.97191 0.92629 0.90909 1.21134 0.97732 0.99152 0.96443 0.91844 0.91942 0.90714 0.88121 0.88619 0.89474 0.89893 0.89689 0.76795 0.91962 0.92229 0.90929 0.92320 0.94327 0.93379 0.93886 0.96268 0.94717 0.91758 0.91909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.89 37.16 0.37 -0.41 16 2 C -0.05 -0.32 6.38 -27.89 -0.18 -0.50 16 3 C 0.02 0.20 6.80 -34.63 -0.24 -0.04 16 4 O 0.10 1.00 11.06 18.65 0.21 1.21 16 5 N -0.36 -4.11 12.01 34.78 0.42 -3.69 16 6 C 0.06 0.60 7.59 -79.77 -0.61 -0.01 16 7 C -0.08 -0.66 10.49 36.00 0.38 -0.28 16 8 C -0.25 -2.73 6.24 -102.89 -0.64 -3.37 16 9 C 0.60 7.50 7.58 -12.53 -0.10 7.40 16 10 O -0.52 -8.74 16.77 5.27 0.09 -8.66 16 11 N -0.71 -7.39 5.09 -54.82 -0.28 -7.67 16 12 C 0.14 1.80 2.28 -67.85 -0.15 1.64 16 13 H 0.10 1.54 6.22 -51.93 -0.32 1.22 16 14 C -0.12 -1.59 5.56 -26.59 -0.15 -1.74 16 15 C -0.10 -1.68 4.62 -26.76 -0.12 -1.81 16 16 C -0.11 -1.97 3.59 -88.85 -0.32 -2.29 16 17 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 18 C 0.18 4.31 4.66 -2.43 -0.01 4.29 16 19 N -0.61 -15.26 3.39 -170.05 -0.58 -15.84 16 20 C -0.22 -6.27 10.29 -15.06 -0.15 -6.42 16 21 H 0.08 2.09 7.83 -52.48 -0.41 1.68 16 22 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 23 N -0.92 -27.08 10.32 55.49 0.57 -26.51 16 24 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 26 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 27 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 28 C 0.14 2.82 6.13 -3.14 -0.02 2.80 16 29 C -0.09 -1.51 2.86 -90.76 -0.26 -1.77 16 30 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 31 C -0.11 -1.28 4.86 -27.96 -0.14 -1.41 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 35 H 0.10 0.73 8.11 -51.93 -0.42 0.31 16 36 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.40 3.09 8.60 -40.82 -0.35 2.74 16 41 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.07 1.39 7.08 -51.93 -0.37 1.02 16 44 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.04 1.02 7.51 -51.93 -0.39 0.63 16 46 H 0.05 1.27 6.99 -51.93 -0.36 0.91 16 47 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 48 H 0.02 0.40 6.07 -51.93 -0.32 0.09 16 49 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 50 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 51 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 403.68 15.07 6.08 6.08 Total: -1.00 -33.28 403.68 -9.36 -42.64 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -8.42 Total: -0.53 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: -2.43 Total: -4.28 kcal Atomic # 7 Polarization: -53.85 SS G_CDS: 0.13 Total: -53.71 kcal Atomic # 8 Polarization: -7.74 SS G_CDS: 0.29 Total: -7.45 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.28 -9.36 -42.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980258577.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.977 kcal (2) G-P(sol) polarization free energy of solvation -33.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds