Wall clock time and date at job start Wed Apr 1 2020 06:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50697 * 109.47445 * 2 1 4 4 N 1.29933 * 125.37706 * 90.00031 * 3 2 1 5 5 C 1.36066 * 108.47978 * 179.97438 * 4 3 2 6 6 C 1.47416 * 126.45414 * 180.02562 * 5 4 3 7 7 O 1.21615 * 120.00381 * 179.97438 * 6 5 4 8 8 N 1.34776 * 119.99821 * 359.97120 * 6 5 4 9 9 C 1.47202 * 126.70495 * 180.02562 * 8 6 5 10 10 C 1.53762 * 106.40915 * 211.33792 * 9 8 6 11 11 C 1.52995 * 112.06903 * 103.40176 * 10 9 8 12 12 C 1.54315 * 109.07667 * 228.11121 * 10 9 8 13 13 N 1.50802 * 103.42860 * 88.72359 * 12 10 9 14 14 C 1.36930 * 127.62626 * 219.60640 * 13 12 10 15 15 H 1.08006 * 119.99724 * 163.80428 * 14 13 12 16 16 C 1.38806 * 120.00488 * 343.80459 * 14 13 12 17 17 N 1.31619 * 120.00141 * 351.60712 * 16 14 13 18 18 Si 1.86801 * 120.00146 * 171.60775 * 16 14 13 19 19 H 1.48496 * 109.47227 * 94.98182 * 18 16 14 20 20 H 1.48506 * 109.47080 * 214.97943 * 18 16 14 21 21 H 1.48496 * 109.47357 * 334.98060 * 18 16 14 22 22 C 1.48112 * 104.52361 * 39.78480 * 13 12 10 23 23 C 1.54316 * 104.71539 * 320.07687 * 22 13 12 24 24 C 1.53003 * 112.91734 * 146.34305 * 23 22 13 25 25 C 1.47209 * 126.70382 * 359.69058 * 8 6 5 26 26 C 1.36096 * 107.09962 * 359.97438 * 5 4 3 27 27 C 1.50699 * 126.52330 * 180.26548 * 26 5 4 28 28 O 1.34050 * 125.37864 * 269.97441 * 3 2 1 29 29 H 1.09003 * 109.46670 * 59.99672 * 1 2 3 30 30 H 1.08994 * 109.47392 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47088 * 300.00433 * 1 2 3 32 32 H 1.08998 * 109.47088 * 239.99567 * 2 1 3 33 33 H 1.09003 * 109.46670 * 120.00327 * 2 1 3 34 34 H 1.09002 * 110.07285 * 330.57040 * 9 8 6 35 35 H 1.08999 * 110.07230 * 92.04303 * 9 8 6 36 36 H 1.09008 * 109.46996 * 61.01705 * 11 10 9 37 37 H 1.09001 * 109.47137 * 181.01550 * 11 10 9 38 38 H 1.08993 * 109.47311 * 301.01851 * 11 10 9 39 39 H 1.09004 * 110.38867 * 207.14185 * 12 10 9 40 40 H 1.09003 * 110.38715 * 329.52490 * 12 10 9 41 41 H 0.96998 * 120.00571 * 180.02562 * 17 16 14 42 42 H 1.08998 * 110.38635 * 201.26408 * 22 13 12 43 43 H 1.09004 * 110.38744 * 78.88632 * 22 13 12 44 44 H 1.08997 * 109.47187 * 301.83585 * 24 23 22 45 45 H 1.09004 * 109.47123 * 61.83796 * 24 23 22 46 46 H 1.08999 * 109.47088 * 181.83402 * 24 23 22 47 47 H 1.09002 * 110.06458 * 267.91204 * 25 8 6 48 48 H 1.08997 * 110.06668 * 29.43199 * 25 8 6 49 49 H 1.09000 * 109.46783 * 179.71121 * 27 26 5 50 50 H 1.08998 * 109.47139 * 299.70658 * 27 26 5 51 51 H 1.09005 * 109.47373 * 59.71563 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2832 2.1300 1.0594 5 6 2.7178 3.3572 0.6639 6 6 3.1128 4.4720 1.5439 7 8 3.4859 5.5244 1.0619 8 7 3.0603 4.3250 2.8826 9 6 3.4173 5.3341 3.8931 10 6 3.9568 4.5606 5.1076 11 6 5.4827 4.6260 5.1991 12 6 3.2757 5.0911 6.3866 13 7 2.0358 4.2405 6.5016 14 6 0.7824 4.6373 6.8843 15 1 -0.0698 4.0061 6.6796 16 6 0.6069 5.8506 7.5352 17 7 1.6542 6.5421 7.9320 18 14 -1.1156 6.5022 7.8482 19 1 -1.5527 6.1107 9.2123 20 1 -1.1129 7.9829 7.7351 21 1 -2.0506 5.9310 6.8459 22 6 2.4798 2.8821 6.1126 23 6 3.4426 3.1087 4.9281 24 6 4.5854 2.0921 4.8863 25 6 2.6284 3.1263 3.6198 26 6 2.7203 3.3614 -0.6970 27 6 3.1312 4.5040 -1.5896 28 8 2.2916 2.1523 -1.0930 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 4.1866 5.9997 3.5017 35 1 2.5351 5.9083 4.1762 36 1 5.7958 5.6643 5.3097 37 1 5.8199 4.0510 6.0615 38 1 5.9193 4.2096 4.2914 39 1 3.9240 4.9450 7.2506 40 1 3.0242 6.1456 6.2734 41 1 1.5316 7.3898 8.3872 42 1 1.6275 2.2792 5.7993 43 1 3.0021 2.4018 6.9400 44 1 5.1479 2.1392 5.8187 45 1 4.1757 1.0900 4.7593 46 1 5.2465 2.3228 4.0510 47 1 1.5625 3.1864 3.8398 48 1 2.8402 2.2311 3.0351 49 1 3.0299 4.2046 -2.6328 50 1 2.4919 5.3651 -1.3951 51 1 4.1690 4.7686 -1.3867 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000982642090.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:05:20 Heat of formation + Delta-G solvation = 16.885270 kcal Electronic energy + Delta-G solvation = -32655.776421 eV Core-core repulsion = 28557.661841 eV Total energy + Delta-G solvation = -4098.114580 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.53330 -40.22727 -38.30946 -35.25132 -34.59158 -34.23750 -32.83878 -31.76811 -31.62395 -30.55185 -27.83952 -26.69956 -25.83599 -25.59138 -24.83957 -24.31989 -22.85273 -21.92558 -21.18287 -20.03609 -19.37893 -17.76597 -17.30086 -17.06843 -16.49834 -15.97492 -15.40093 -15.28313 -14.89043 -14.63594 -14.44067 -14.09943 -13.83523 -13.63374 -13.43576 -13.32779 -13.21832 -13.13045 -12.84467 -12.78830 -12.60624 -12.10042 -11.98661 -11.92286 -11.68884 -11.52365 -11.41825 -11.38364 -11.27572 -11.26022 -10.83981 -10.73787 -10.66074 -10.40684 -10.01355 -10.00390 -9.91920 -9.65955 -9.60545 -9.46965 -8.88984 -8.63445 -8.16547 -6.81051 -5.76096 -3.09551 1.04965 1.99074 2.34083 3.22879 3.39721 3.45819 3.46257 3.47587 3.76056 4.47197 4.48728 4.62909 4.74855 4.81485 4.96105 5.01266 5.08546 5.13812 5.24335 5.33745 5.36449 5.45163 5.48595 5.59056 5.61975 5.66488 5.74530 5.78513 5.81118 5.84684 5.87983 5.89139 5.94692 6.10472 6.17918 6.28380 6.31895 6.36033 6.36983 6.49991 6.56306 6.60524 6.65094 6.82958 6.89750 7.01337 7.30258 7.43471 7.57190 7.73062 7.91505 8.19106 8.38185 9.10790 9.76629 10.54292 11.38413 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011196 B = 0.003546 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2500.188914 B = 7895.019116 C = 8318.235649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.024 4.024 3 C 0.188 3.812 4 N -0.447 5.447 5 C -0.062 4.062 6 C 0.610 3.390 7 O -0.548 6.548 8 N -0.590 5.590 9 C 0.126 3.874 10 C -0.094 4.094 11 C -0.124 4.124 12 C 0.174 3.826 13 N -0.597 5.597 14 C -0.222 4.222 15 H 0.074 0.926 16 C -0.004 4.004 17 N -0.915 5.915 18 Si 0.907 3.093 19 H -0.289 1.289 20 H -0.290 1.290 21 H -0.281 1.281 22 C 0.143 3.857 23 C -0.086 4.086 24 C -0.122 4.122 25 C 0.117 3.883 26 C 0.031 3.969 27 C -0.064 4.064 28 O -0.198 6.198 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.092 0.908 33 H 0.108 0.892 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.053 0.947 37 H 0.058 0.942 38 H 0.047 0.953 39 H 0.028 0.972 40 H 0.088 0.912 41 H 0.253 0.747 42 H 0.048 0.952 43 H 0.024 0.976 44 H 0.058 0.942 45 H 0.051 0.949 46 H 0.050 0.950 47 H 0.069 0.931 48 H 0.095 0.905 49 H 0.075 0.925 50 H 0.098 0.902 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.438 -12.201 -17.060 21.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.062 4.062 3 C -0.021 4.021 4 N -0.177 5.177 5 C -0.182 4.182 6 C 0.398 3.602 7 O -0.428 6.428 8 N -0.319 5.319 9 C 0.004 3.996 10 C -0.096 4.096 11 C -0.182 4.182 12 C 0.049 3.951 13 N -0.321 5.321 14 C -0.350 4.350 15 H 0.092 0.908 16 C -0.201 4.201 17 N -0.562 5.562 18 Si 0.738 3.262 19 H -0.216 1.216 20 H -0.216 1.216 21 H -0.206 1.206 22 C 0.016 3.984 23 C -0.088 4.088 24 C -0.179 4.179 25 C -0.006 4.006 26 C -0.025 4.025 27 C -0.120 4.120 28 O -0.086 6.086 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.110 0.890 33 H 0.126 0.874 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.066 0.934 39 H 0.046 0.954 40 H 0.106 0.894 41 H 0.063 0.937 42 H 0.066 0.934 43 H 0.041 0.959 44 H 0.077 0.923 45 H 0.070 0.930 46 H 0.069 0.931 47 H 0.088 0.912 48 H 0.113 0.887 49 H 0.094 0.906 50 H 0.117 0.883 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 4.392 -11.646 -16.657 20.793 hybrid contribution -0.903 0.578 -0.310 1.116 sum 3.489 -11.068 -16.967 20.556 Atomic orbital electron populations 1.21798 0.92962 1.03029 1.03184 1.20088 0.96965 0.83927 1.05236 1.26321 1.00418 0.96952 0.78389 1.70859 1.15059 1.02601 1.29158 1.21500 1.10184 0.94419 0.92061 1.16267 0.78357 0.85111 0.80453 1.90774 1.49785 1.27528 1.74665 1.48281 1.62831 1.16960 1.03869 1.22195 1.00412 0.90615 0.86391 1.22511 0.94889 0.94485 0.97748 1.21676 0.94245 1.01336 1.00900 1.22023 0.86018 0.97215 0.89846 1.45486 1.06093 1.02018 1.78462 1.18957 0.82701 1.03084 1.30249 0.90843 1.24838 0.97164 0.98921 0.99208 1.69877 1.27490 1.15468 1.43340 0.86181 0.83902 0.78207 0.77950 1.21607 1.21648 1.20647 1.21614 0.94579 0.89320 0.92880 1.22415 0.95613 0.94862 0.95956 1.21636 0.97306 0.97643 1.01358 1.22502 0.98584 0.88012 0.91463 1.23656 0.98661 0.85699 0.94514 1.20413 1.03689 0.91365 0.96576 1.84298 1.63941 1.22306 1.38032 0.92256 0.90823 0.91419 0.88961 0.87361 0.91249 0.90289 0.92805 0.92346 0.93388 0.95442 0.89411 0.93673 0.93391 0.95865 0.92288 0.93026 0.93122 0.91242 0.88671 0.90562 0.88322 0.88359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.89 37.16 0.37 -0.69 16 2 C -0.02 -0.18 6.56 -27.88 -0.18 -0.36 16 3 C 0.19 2.23 7.56 -13.08 -0.10 2.13 16 4 N -0.45 -6.61 8.39 -7.66 -0.06 -6.67 16 5 C -0.06 -0.99 6.83 -83.02 -0.57 -1.55 16 6 C 0.61 11.25 7.87 -12.52 -0.10 11.16 16 7 O -0.55 -10.83 15.84 5.26 0.08 -10.74 16 8 N -0.59 -11.02 3.32 -172.67 -0.57 -11.59 16 9 C 0.13 2.46 6.11 -3.26 -0.02 2.44 16 10 C -0.09 -1.75 1.06 -152.33 -0.16 -1.91 16 11 C -0.12 -1.96 7.47 37.16 0.28 -1.68 16 12 C 0.17 4.03 4.87 -0.93 0.00 4.02 16 13 N -0.60 -14.73 3.43 -166.73 -0.57 -15.30 16 14 C -0.22 -6.05 10.36 -15.06 -0.16 -6.21 16 15 H 0.07 1.96 7.84 -52.48 -0.41 1.55 16 16 C 0.00 -0.12 5.42 -17.43 -0.09 -0.21 16 17 N -0.92 -26.43 10.87 55.49 0.60 -25.82 16 18 Si 0.91 22.03 29.56 -169.99 -5.03 17.01 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 C 0.14 2.90 6.11 -2.47 -0.02 2.88 16 23 C -0.09 -1.50 1.09 -152.14 -0.17 -1.66 16 24 C -0.12 -1.75 7.56 37.16 0.28 -1.47 16 25 C 0.12 2.07 5.61 -3.08 -0.02 2.05 16 26 C 0.03 0.41 7.44 -35.08 -0.26 0.15 16 27 C -0.06 -0.66 9.13 36.01 0.33 -0.33 16 28 O -0.20 -2.44 10.73 6.51 0.07 -2.37 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 1.32 7.61 -51.93 -0.40 0.92 16 35 H 0.08 1.77 7.48 -51.93 -0.39 1.38 16 36 H 0.05 0.83 8.14 -51.92 -0.42 0.40 16 37 H 0.06 0.88 7.17 -51.93 -0.37 0.51 16 38 H 0.05 0.71 7.08 -51.93 -0.37 0.35 16 39 H 0.03 0.67 7.97 -51.93 -0.41 0.25 16 40 H 0.09 2.28 6.17 -51.93 -0.32 1.96 16 41 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 42 H 0.05 0.95 7.66 -51.93 -0.40 0.55 16 43 H 0.02 0.48 7.99 -51.93 -0.42 0.06 16 44 H 0.06 0.82 7.15 -51.93 -0.37 0.45 16 45 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.05 0.71 7.10 -51.93 -0.37 0.34 16 47 H 0.07 1.38 7.47 -51.93 -0.39 0.99 16 48 H 0.10 1.57 5.42 -51.93 -0.28 1.29 16 49 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 50 H 0.10 1.06 8.08 -51.93 -0.42 0.64 16 51 H 0.10 1.02 8.07 -51.93 -0.42 0.60 16 LS Contribution 398.09 15.07 6.00 6.00 Total: -1.00 -32.17 398.09 -8.31 -40.48 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -8.25 Total: 0.25 kcal Atomic # 6 Polarization: 9.35 SS G_CDS: -0.59 Total: 8.76 kcal Atomic # 7 Polarization: -58.78 SS G_CDS: -0.60 Total: -59.38 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: 0.15 Total: -13.11 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.03 Total: 17.01 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.17 -8.31 -40.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982642090.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.362 kcal (2) G-P(sol) polarization free energy of solvation -32.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds