Wall clock time and date at job start Wed Apr 1 2020 06:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50697 * 109.47445 * 2 1 4 4 N 1.29933 * 125.37706 * 90.00031 * 3 2 1 5 5 C 1.36066 * 108.47978 * 179.97438 * 4 3 2 6 6 C 1.47416 * 126.45414 * 180.02562 * 5 4 3 7 7 O 1.21615 * 120.00381 * 179.97438 * 6 5 4 8 8 N 1.34776 * 119.99821 * 359.97120 * 6 5 4 9 9 C 1.47202 * 126.70495 * 180.02562 * 8 6 5 10 10 C 1.53762 * 106.40915 * 211.33792 * 9 8 6 11 11 C 1.52995 * 112.06903 * 103.40176 * 10 9 8 12 12 C 1.54315 * 109.07667 * 228.11121 * 10 9 8 13 13 N 1.50802 * 103.42860 * 88.72359 * 12 10 9 14 14 C 1.36930 * 127.62626 * 219.60640 * 13 12 10 15 15 H 1.08006 * 119.99724 * 163.80428 * 14 13 12 16 16 C 1.38806 * 120.00488 * 343.80459 * 14 13 12 17 17 N 1.31619 * 120.00141 * 351.60712 * 16 14 13 18 18 Si 1.86801 * 120.00146 * 171.60775 * 16 14 13 19 19 H 1.48496 * 109.47227 * 94.98182 * 18 16 14 20 20 H 1.48506 * 109.47080 * 214.97943 * 18 16 14 21 21 H 1.48496 * 109.47357 * 334.98060 * 18 16 14 22 22 C 1.48112 * 104.52361 * 39.78480 * 13 12 10 23 23 C 1.54316 * 104.71539 * 320.07687 * 22 13 12 24 24 C 1.53003 * 112.91734 * 146.34305 * 23 22 13 25 25 C 1.47209 * 126.70382 * 359.69058 * 8 6 5 26 26 C 1.36096 * 107.09962 * 359.97438 * 5 4 3 27 27 C 1.50699 * 126.52330 * 180.26548 * 26 5 4 28 28 O 1.34050 * 125.37864 * 269.97441 * 3 2 1 29 29 H 1.09003 * 109.46670 * 59.99672 * 1 2 3 30 30 H 1.08994 * 109.47392 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47088 * 300.00433 * 1 2 3 32 32 H 1.08998 * 109.47088 * 239.99567 * 2 1 3 33 33 H 1.09003 * 109.46670 * 120.00327 * 2 1 3 34 34 H 1.09002 * 110.07285 * 330.57040 * 9 8 6 35 35 H 1.08999 * 110.07230 * 92.04303 * 9 8 6 36 36 H 1.09008 * 109.46996 * 61.01705 * 11 10 9 37 37 H 1.09001 * 109.47137 * 181.01550 * 11 10 9 38 38 H 1.08993 * 109.47311 * 301.01851 * 11 10 9 39 39 H 1.09004 * 110.38867 * 207.14185 * 12 10 9 40 40 H 1.09003 * 110.38715 * 329.52490 * 12 10 9 41 41 H 0.96998 * 120.00571 * 180.02562 * 17 16 14 42 42 H 1.08998 * 110.38635 * 201.26408 * 22 13 12 43 43 H 1.09004 * 110.38744 * 78.88632 * 22 13 12 44 44 H 1.08997 * 109.47187 * 301.83585 * 24 23 22 45 45 H 1.09004 * 109.47123 * 61.83796 * 24 23 22 46 46 H 1.08999 * 109.47088 * 181.83402 * 24 23 22 47 47 H 1.09002 * 110.06458 * 267.91204 * 25 8 6 48 48 H 1.08997 * 110.06668 * 29.43199 * 25 8 6 49 49 H 1.09000 * 109.46783 * 179.71121 * 27 26 5 50 50 H 1.08998 * 109.47139 * 299.70658 * 27 26 5 51 51 H 1.09005 * 109.47373 * 59.71563 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2832 2.1300 1.0594 5 6 2.7178 3.3572 0.6639 6 6 3.1128 4.4720 1.5439 7 8 3.4859 5.5244 1.0619 8 7 3.0603 4.3250 2.8826 9 6 3.4173 5.3341 3.8931 10 6 3.9568 4.5606 5.1076 11 6 5.4827 4.6260 5.1991 12 6 3.2757 5.0911 6.3866 13 7 2.0358 4.2405 6.5016 14 6 0.7824 4.6373 6.8843 15 1 -0.0698 4.0061 6.6796 16 6 0.6069 5.8506 7.5352 17 7 1.6542 6.5421 7.9320 18 14 -1.1156 6.5022 7.8482 19 1 -1.5527 6.1107 9.2123 20 1 -1.1129 7.9829 7.7351 21 1 -2.0506 5.9310 6.8459 22 6 2.4798 2.8821 6.1126 23 6 3.4426 3.1087 4.9281 24 6 4.5854 2.0921 4.8863 25 6 2.6284 3.1263 3.6198 26 6 2.7203 3.3614 -0.6970 27 6 3.1312 4.5040 -1.5896 28 8 2.2916 2.1523 -1.0930 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 4.1866 5.9997 3.5017 35 1 2.5351 5.9083 4.1762 36 1 5.7958 5.6643 5.3097 37 1 5.8199 4.0510 6.0615 38 1 5.9193 4.2096 4.2914 39 1 3.9240 4.9450 7.2506 40 1 3.0242 6.1456 6.2734 41 1 1.5316 7.3898 8.3872 42 1 1.6275 2.2792 5.7993 43 1 3.0021 2.4018 6.9400 44 1 5.1479 2.1392 5.8187 45 1 4.1757 1.0900 4.7593 46 1 5.2465 2.3228 4.0510 47 1 1.5625 3.1864 3.8398 48 1 2.8402 2.2311 3.0351 49 1 3.0299 4.2046 -2.6328 50 1 2.4919 5.3651 -1.3951 51 1 4.1690 4.7686 -1.3867 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982642090.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:05:19 Heat of formation + Delta-G solvation = -3.513144 kcal Electronic energy + Delta-G solvation = -32656.660962 eV Core-core repulsion = 28557.661841 eV Total energy + Delta-G solvation = -4098.999121 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -44.54278 -41.75291 -39.79658 -36.50369 -36.04063 -35.08104 -34.56466 -33.15566 -32.61148 -32.36678 -29.04520 -28.22986 -27.27997 -27.00710 -26.47998 -25.31856 -24.02923 -23.43261 -22.22941 -21.69355 -20.63619 -19.22440 -18.91984 -18.23730 -18.07389 -17.20350 -16.87278 -16.69498 -16.40215 -15.71591 -15.66678 -15.49584 -15.28960 -14.96475 -14.78506 -14.62561 -14.48802 -14.35110 -14.15338 -13.65355 -13.54181 -13.44302 -13.33950 -13.26501 -13.01942 -12.93503 -12.76351 -12.62431 -12.60484 -12.49390 -12.38054 -12.15234 -12.03757 -11.92809 -11.78222 -11.74489 -11.46983 -11.24701 -11.14929 -11.07054 -10.66428 -10.01065 -9.61908 -8.83527 -7.88790 -5.22587 -0.03055 0.91727 1.39679 1.43275 1.44702 1.53256 1.86484 2.13007 2.47843 2.79638 3.30008 3.33668 3.53725 3.59420 3.61027 3.74729 3.95523 4.05757 4.22213 4.22637 4.25395 4.26935 4.34990 4.36818 4.43064 4.52939 4.53894 4.65256 4.77482 4.84716 4.85168 4.86813 4.91233 4.94878 4.96071 4.98506 5.00332 5.02358 5.08103 5.15645 5.19029 5.23992 5.31491 5.34348 5.39850 5.44039 5.50006 5.61118 5.75576 6.18350 6.37307 6.49816 6.94715 7.00988 7.69980 8.50459 9.25014 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011196 B = 0.003546 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2500.188914 B = 7895.019116 C = 8318.235649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.024 4.024 3 C 0.200 3.800 4 N -0.476 5.476 5 C -0.099 4.099 6 C 0.607 3.393 7 O -0.569 6.569 8 N -0.595 5.595 9 C 0.132 3.868 10 C -0.084 4.084 11 C -0.117 4.117 12 C 0.182 3.818 13 N -0.620 5.620 14 C -0.230 4.230 15 H 0.074 0.926 16 C -0.058 4.058 17 N -0.943 5.943 18 Si 0.968 3.032 19 H -0.284 1.284 20 H -0.296 1.296 21 H -0.274 1.274 22 C 0.141 3.859 23 C -0.075 4.075 24 C -0.114 4.114 25 C 0.129 3.871 26 C 0.045 3.955 27 C -0.064 4.064 28 O -0.193 6.193 29 H 0.056 0.944 30 H 0.099 0.901 31 H 0.044 0.956 32 H 0.123 0.877 33 H 0.120 0.880 34 H 0.072 0.928 35 H 0.038 0.962 36 H 0.054 0.946 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.012 0.988 40 H 0.050 0.950 41 H 0.248 0.752 42 H 0.051 0.949 43 H 0.030 0.970 44 H 0.067 0.933 45 H 0.071 0.929 46 H 0.059 0.941 47 H 0.040 0.960 48 H 0.114 0.886 49 H 0.109 0.891 50 H 0.092 0.908 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.014 -15.034 -19.226 24.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.061 4.061 3 C -0.009 4.009 4 N -0.205 5.205 5 C -0.217 4.217 6 C 0.397 3.603 7 O -0.450 6.450 8 N -0.325 5.325 9 C 0.010 3.990 10 C -0.086 4.086 11 C -0.174 4.174 12 C 0.057 3.943 13 N -0.344 5.344 14 C -0.359 4.359 15 H 0.091 0.909 16 C -0.252 4.252 17 N -0.592 5.592 18 Si 0.797 3.203 19 H -0.211 1.211 20 H -0.222 1.222 21 H -0.199 1.199 22 C 0.015 3.985 23 C -0.078 4.078 24 C -0.172 4.172 25 C 0.007 3.993 26 C -0.012 4.012 27 C -0.120 4.120 28 O -0.080 6.080 29 H 0.075 0.925 30 H 0.118 0.882 31 H 0.063 0.937 32 H 0.141 0.859 33 H 0.138 0.862 34 H 0.091 0.909 35 H 0.056 0.944 36 H 0.073 0.927 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.030 0.970 40 H 0.068 0.932 41 H 0.057 0.943 42 H 0.069 0.931 43 H 0.048 0.952 44 H 0.086 0.914 45 H 0.090 0.910 46 H 0.078 0.922 47 H 0.058 0.942 48 H 0.131 0.869 49 H 0.128 0.872 50 H 0.111 0.889 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 4.973 -14.517 -18.830 24.290 hybrid contribution -1.150 1.401 0.278 1.834 sum 3.823 -13.115 -18.552 23.039 Atomic orbital electron populations 1.21789 0.92620 1.04344 1.01937 1.20428 0.97026 0.81343 1.07324 1.27276 0.98193 0.97879 0.77546 1.70760 1.16628 1.02548 1.30595 1.21237 1.13087 0.94653 0.92732 1.16667 0.77624 0.85662 0.80370 1.90743 1.50663 1.28589 1.74963 1.48315 1.63276 1.16784 1.04092 1.21943 0.98720 0.90993 0.87390 1.22377 0.96652 0.94930 0.94678 1.21634 0.91492 1.01977 1.02298 1.21792 0.85714 0.95356 0.91443 1.45727 1.05815 1.04317 1.78536 1.19261 0.84074 1.03168 1.29411 0.90852 1.25556 1.00435 0.99382 0.99815 1.70053 1.29158 1.15523 1.44429 0.85229 0.80161 0.77021 0.77933 1.21065 1.22226 1.19893 1.21777 0.95411 0.87273 0.93999 1.22390 0.96064 0.94952 0.94369 1.21602 0.95948 0.97355 1.02259 1.22390 0.96880 0.88342 0.91738 1.24087 0.96685 0.86409 0.94010 1.20539 1.03345 0.90131 0.97987 1.84349 1.63746 1.21873 1.38050 0.92467 0.88240 0.93692 0.85894 0.86187 0.90911 0.94400 0.92689 0.91071 0.91630 0.97003 0.93154 0.94320 0.93086 0.95175 0.91402 0.90979 0.92153 0.94152 0.86851 0.87240 0.88927 0.88293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.89 71.98 0.71 -0.97 16 2 C -0.02 -0.27 6.56 29.85 0.20 -0.07 16 3 C 0.20 4.29 7.56 88.39 0.67 4.95 16 4 N -0.48 -13.44 8.39 -293.04 -2.46 -15.90 16 5 C -0.10 -3.09 6.83 40.41 0.28 -2.81 16 6 C 0.61 22.57 7.87 86.66 0.68 23.25 16 7 O -0.57 -22.78 15.84 -4.08 -0.06 -22.85 16 8 N -0.59 -22.59 3.32 -818.46 -2.71 -25.30 16 9 C 0.13 5.38 6.11 86.50 0.53 5.91 16 10 C -0.08 -3.17 1.06 -50.77 -0.05 -3.22 16 11 C -0.12 -3.53 7.47 71.98 0.54 -3.00 16 12 C 0.18 8.79 4.87 85.98 0.42 9.21 16 13 N -0.62 -31.59 3.43 -681.40 -2.33 -33.92 16 14 C -0.23 -12.96 10.36 84.03 0.87 -12.09 16 15 H 0.07 4.02 7.84 -2.91 -0.02 4.00 16 16 C -0.06 -3.32 5.42 84.86 0.46 -2.86 16 17 N -0.94 -56.84 10.87 21.65 0.24 -56.60 16 18 Si 0.97 46.63 29.56 68.60 2.03 48.66 16 19 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 20 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 21 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 22 C 0.14 5.71 6.11 86.52 0.53 6.24 16 23 C -0.08 -2.57 1.09 -50.65 -0.06 -2.63 16 24 C -0.11 -2.93 7.56 71.98 0.54 -2.38 16 25 C 0.13 4.55 5.61 86.62 0.49 5.04 16 26 C 0.05 1.14 7.44 25.19 0.19 1.33 16 27 C -0.06 -1.21 9.13 71.24 0.65 -0.56 16 28 O -0.19 -4.24 10.73 0.38 0.00 -4.24 16 29 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.07 2.86 7.61 -2.39 -0.02 2.85 16 35 H 0.04 1.83 7.48 -2.39 -0.02 1.81 16 36 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 37 H 0.07 1.99 7.17 -2.39 -0.02 1.97 16 38 H 0.06 1.79 7.08 -2.39 -0.02 1.77 16 39 H 0.01 0.60 7.97 -2.38 -0.02 0.58 16 40 H 0.05 2.79 6.17 -2.39 -0.01 2.78 16 41 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 42 H 0.05 2.01 7.66 -2.39 -0.02 1.99 16 43 H 0.03 1.20 7.99 -2.39 -0.02 1.18 16 44 H 0.07 1.65 7.15 -2.39 -0.02 1.64 16 45 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 46 H 0.06 1.47 7.10 -2.39 -0.02 1.46 16 47 H 0.04 1.65 7.47 -2.39 -0.02 1.63 16 48 H 0.11 3.61 5.42 -2.39 -0.01 3.60 16 49 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 50 H 0.09 1.91 8.08 -2.39 -0.02 1.89 16 51 H 0.10 1.91 8.07 -2.38 -0.02 1.89 16 Total: -1.00 -73.32 398.09 3.26 -70.06 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: 0.93 Total: 14.75 kcal Atomic # 6 Polarization: 17.70 SS G_CDS: 7.64 Total: 25.34 kcal Atomic # 7 Polarization: -124.46 SS G_CDS: -7.27 Total: -131.73 kcal Atomic # 8 Polarization: -27.03 SS G_CDS: -0.06 Total: -27.09 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.66 kcal Total: -73.32 3.26 -70.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982642090.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.549 kcal (2) G-P(sol) polarization free energy of solvation -73.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds