Wall clock time and date at job start Wed Apr 1 2020 05:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50700 * 109.47187 * 2 1 4 4 N 1.30010 * 127.33886 * 269.95870 * 3 2 1 5 5 O 1.20660 * 112.30521 * 180.02562 * 4 3 2 6 6 C 1.33492 * 113.15090 * 359.71506 * 5 4 3 7 7 C 1.50699 * 126.82388 * 180.30930 * 6 5 4 8 8 C 1.37358 * 106.34540 * 0.45445 * 6 5 4 9 9 C 1.47399 * 128.56415 * 179.85396 * 8 6 5 10 10 O 1.21602 * 120.00319 * 269.67235 * 9 8 6 11 11 N 1.34785 * 119.99730 * 89.67810 * 9 8 6 12 12 C 1.48109 * 127.84473 * 180.02562 * 11 9 8 13 13 C 1.54312 * 104.71400 * 140.19828 * 12 11 9 14 14 C 1.52998 * 112.07319 * 146.94745 * 13 12 11 15 15 C 1.53768 * 109.07993 * 271.64028 * 13 12 11 16 16 N 1.47198 * 106.40102 * 94.29154 * 15 13 12 17 17 C 1.36941 * 126.70163 * 211.29151 * 16 15 13 18 18 H 1.08001 * 119.99962 * 180.02562 * 17 16 15 19 19 C 1.38816 * 119.99764 * 0.04798 * 17 16 15 20 20 N 1.31615 * 119.99866 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99582 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47579 * 60.00113 * 21 19 17 23 23 H 1.48512 * 109.46858 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47318 * 299.99641 * 21 19 17 25 25 C 1.47202 * 106.59830 * 31.33212 * 16 15 13 26 26 C 1.53757 * 106.45330 * 328.64500 * 25 16 15 27 27 C 1.52998 * 112.06541 * 141.01786 * 26 25 16 28 28 C 1.48111 * 127.84313 * 359.97173 * 11 9 8 29 29 H 1.09005 * 109.46869 * 300.00022 * 1 2 3 30 30 H 1.09002 * 109.47423 * 59.99481 * 1 2 3 31 31 H 1.08996 * 109.47315 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46662 * 240.00217 * 2 1 3 33 33 H 1.08999 * 109.47114 * 120.00093 * 2 1 3 34 34 H 1.09007 * 109.47362 * 270.17052 * 7 6 5 35 35 H 1.08997 * 109.47676 * 30.17168 * 7 6 5 36 36 H 1.09008 * 109.46990 * 150.17050 * 7 6 5 37 37 H 1.09005 * 110.38581 * 21.38874 * 12 11 9 38 38 H 1.08995 * 110.38564 * 259.01091 * 12 11 9 39 39 H 1.08999 * 109.47264 * 182.01095 * 14 13 12 40 40 H 1.08995 * 109.47303 * 302.01110 * 14 13 12 41 41 H 1.09002 * 109.47209 * 62.01348 * 14 13 12 42 42 H 1.08995 * 110.06783 * 335.05851 * 15 13 12 43 43 H 1.08999 * 110.06816 * 213.52600 * 15 13 12 44 44 H 0.97005 * 119.99299 * 179.97438 * 20 19 17 45 45 H 1.09002 * 110.07031 * 87.91087 * 25 16 15 46 46 H 1.08997 * 110.07121 * 209.38414 * 25 16 15 47 47 H 1.08998 * 109.47276 * 61.01840 * 27 26 25 48 48 H 1.09001 * 109.47182 * 181.01570 * 27 26 25 49 49 H 1.08999 * 109.47149 * 301.01458 * 27 26 25 50 50 H 1.08998 * 110.38939 * 338.60776 * 28 11 9 51 51 H 1.08993 * 110.39045 * 100.88666 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2959 2.1640 -1.0337 5 8 2.6846 3.2626 -0.7207 6 6 2.7412 3.4425 0.6008 7 6 3.1741 4.6914 1.3247 8 6 2.3296 2.2620 1.1697 9 6 2.2092 1.9237 2.5993 10 8 3.1522 1.4327 3.1894 11 7 1.0537 2.1584 3.2523 12 6 0.7434 1.8896 4.6754 13 6 -0.0880 3.1068 5.1319 14 6 -1.1359 2.7269 6.1799 15 6 0.8632 4.2041 5.6376 16 7 1.1094 5.0995 4.4955 17 6 2.2531 5.8092 4.2437 18 1 2.3168 6.4377 3.3676 19 6 3.3308 5.7205 5.1141 20 7 3.2531 4.9546 6.1817 21 14 4.8906 6.6892 4.7709 22 1 4.5752 8.1399 4.7373 23 1 5.8840 6.4239 5.8426 24 1 5.4528 6.2743 3.4605 25 6 -0.1143 5.0838 3.6775 26 6 -0.7308 3.6850 3.8429 27 6 -2.2575 3.7364 3.9305 28 6 -0.1936 2.7448 2.7100 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 4.2492 4.6549 1.5011 35 1 2.9350 5.5646 0.7177 36 1 2.6513 4.7580 2.2789 37 1 1.6623 1.8175 5.2573 38 1 0.1599 0.9739 4.7703 39 1 -1.7205 3.6077 6.4452 40 1 -1.7965 1.9617 5.7724 41 1 -0.6373 2.3405 7.0689 42 1 1.8003 3.7607 5.9741 43 1 0.3965 4.7571 6.4527 44 1 4.0064 4.8924 6.7897 45 1 -0.8108 5.8438 4.0316 46 1 0.1330 5.2620 2.6310 47 1 -2.6600 4.1623 3.0114 48 1 -2.6479 2.7276 4.0649 49 1 -2.5521 4.3559 4.7775 50 1 0.0175 3.3186 1.8077 51 1 -0.9214 1.9612 2.4994 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000982792972.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:43:51 Heat of formation + Delta-G solvation = 54.932132 kcal Electronic energy + Delta-G solvation = -34273.191824 eV Core-core repulsion = 30176.727080 eV Total energy + Delta-G solvation = -4096.464744 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -44.61864 -40.24790 -38.13438 -35.21339 -34.71058 -33.44688 -32.81449 -31.65445 -31.25166 -30.69344 -27.90762 -26.90113 -25.93817 -25.78029 -24.92717 -24.50159 -23.40214 -22.09425 -20.03511 -19.93292 -19.12444 -17.81668 -17.57385 -17.28710 -16.67229 -16.04587 -15.49090 -15.32582 -14.77627 -14.41628 -14.19420 -13.93282 -13.72375 -13.53685 -13.31178 -13.22107 -13.02456 -12.86246 -12.78121 -12.67027 -12.27663 -12.04509 -11.98428 -11.70405 -11.64653 -11.54649 -11.44311 -11.39796 -11.35033 -10.91525 -10.87434 -10.72779 -10.65458 -10.18072 -9.98772 -9.86991 -9.79097 -9.74207 -9.61054 -9.41504 -9.02079 -8.77610 -8.21388 -6.89652 -5.70245 -3.13860 1.60063 2.09756 2.88993 3.06228 3.34388 3.38999 3.42648 3.53074 4.16213 4.41128 4.46345 4.73517 4.81013 5.07684 5.10425 5.14093 5.19693 5.27109 5.33692 5.39605 5.46703 5.49242 5.62367 5.65387 5.70426 5.72124 5.73770 5.82922 5.87630 5.90415 5.95016 5.97889 6.07751 6.08458 6.10673 6.13229 6.17647 6.27581 6.29996 6.46957 6.48631 6.57645 6.65826 6.69897 6.79450 6.94745 7.40660 7.50498 7.80672 7.97997 8.36800 8.41944 8.57649 9.14140 9.76368 10.45034 11.30205 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009411 B = 0.006175 C = 0.004488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2974.585982 B = 4533.535799 C = 6236.927784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.045 4.045 3 C 0.053 3.947 4 N -0.363 5.363 5 O 0.086 5.914 6 C 0.034 3.966 7 C -0.103 4.103 8 C -0.245 4.245 9 C 0.629 3.371 10 O -0.527 6.527 11 N -0.592 5.592 12 C 0.128 3.872 13 C -0.096 4.096 14 C -0.122 4.122 15 C 0.148 3.852 16 N -0.591 5.591 17 C -0.225 4.225 18 H 0.078 0.922 19 C -0.001 4.001 20 N -0.910 5.910 21 Si 0.904 3.096 22 H -0.285 1.285 23 H -0.289 1.289 24 H -0.282 1.282 25 C 0.145 3.855 26 C -0.087 4.087 27 C -0.122 4.122 28 C 0.121 3.879 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.138 0.862 37 H 0.087 0.913 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.049 0.951 41 H 0.054 0.946 42 H 0.126 0.874 43 H 0.006 0.994 44 H 0.254 0.746 45 H 0.018 0.982 46 H 0.037 0.963 47 H 0.051 0.949 48 H 0.054 0.946 49 H 0.062 0.938 50 H 0.069 0.931 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.192 -6.507 -7.427 14.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.083 4.083 3 C -0.110 4.110 4 N -0.070 5.070 5 O 0.026 5.974 6 C -0.029 4.029 7 C -0.160 4.160 8 C -0.252 4.252 9 C 0.415 3.585 10 O -0.404 6.404 11 N -0.324 5.324 12 C 0.005 3.995 13 C -0.098 4.098 14 C -0.180 4.180 15 C 0.023 3.977 16 N -0.314 5.314 17 C -0.353 4.353 18 H 0.096 0.904 19 C -0.198 4.198 20 N -0.557 5.557 21 Si 0.734 3.266 22 H -0.212 1.212 23 H -0.215 1.215 24 H -0.208 1.208 25 C 0.019 3.981 26 C -0.090 4.090 27 C -0.180 4.180 28 C -0.003 4.003 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.102 0.898 33 H 0.105 0.895 34 H 0.109 0.891 35 H 0.100 0.900 36 H 0.155 0.845 37 H 0.106 0.894 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.143 0.857 43 H 0.024 0.976 44 H 0.065 0.935 45 H 0.036 0.964 46 H 0.056 0.944 47 H 0.070 0.930 48 H 0.073 0.927 49 H 0.081 0.919 50 H 0.087 0.913 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.348 -6.890 -8.388 14.325 hybrid contribution 0.797 0.573 0.552 1.126 sum -8.551 -6.317 -7.836 13.207 Atomic orbital electron populations 1.21736 0.93718 1.02300 1.02562 1.19941 0.96544 0.87870 1.03940 1.24649 1.00903 0.98529 0.86903 1.73536 1.17141 0.92807 1.23554 1.84497 1.63154 1.26540 1.23243 1.24935 0.97341 0.97790 0.82829 1.21129 1.04032 0.89195 1.01620 1.21823 1.13202 0.95075 0.95108 1.16173 0.80976 0.77884 0.83424 1.90808 1.37125 1.44567 1.67860 1.48371 1.11458 1.60992 1.11574 1.22375 0.99797 0.96076 0.81202 1.22587 0.95895 0.96890 0.94467 1.21619 0.97636 1.00744 0.98029 1.21999 0.98716 0.88449 0.88579 1.44342 1.10655 1.51855 1.24557 1.18856 0.89689 1.19912 1.06839 0.90393 1.24728 0.98315 0.99814 0.96950 1.69560 1.30687 1.41285 1.14155 0.86328 0.83195 0.79484 0.77591 1.21156 1.21484 1.20824 1.21343 0.89452 0.92257 0.95098 1.22786 0.94604 0.97028 0.94556 1.21588 0.93387 1.01404 1.01583 1.22709 0.85340 0.95565 0.96641 0.92124 0.92342 0.91592 0.89813 0.89535 0.89133 0.90035 0.84451 0.89431 0.92492 0.92319 0.93236 0.92649 0.85705 0.97586 0.93452 0.96407 0.94441 0.93009 0.92692 0.91858 0.91269 0.92015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.89 37.16 0.37 -1.13 16 2 C -0.04 -0.56 6.55 -27.88 -0.18 -0.74 16 3 C 0.05 0.84 6.84 -79.77 -0.55 0.29 16 4 N -0.36 -5.98 12.01 34.78 0.42 -5.56 16 5 O 0.09 1.42 11.06 18.65 0.21 1.63 16 6 C 0.03 0.59 7.55 -34.63 -0.26 0.33 16 7 C -0.10 -1.77 10.32 36.00 0.37 -1.40 16 8 C -0.24 -4.42 5.14 -102.89 -0.53 -4.95 16 9 C 0.63 12.67 7.70 -12.53 -0.10 12.57 16 10 O -0.53 -12.68 17.37 5.28 0.09 -12.59 16 11 N -0.59 -10.56 3.32 -169.20 -0.56 -11.12 16 12 C 0.13 2.23 6.05 -2.47 -0.01 2.21 16 13 C -0.10 -1.61 1.06 -152.25 -0.16 -1.77 16 14 C -0.12 -1.66 7.50 37.16 0.28 -1.38 16 15 C 0.15 3.27 5.31 -3.26 -0.02 3.25 16 16 N -0.59 -13.38 3.39 -171.18 -0.58 -13.96 16 17 C -0.23 -5.58 8.00 -15.06 -0.12 -5.70 16 18 H 0.08 1.84 7.35 -52.49 -0.39 1.46 16 19 C 0.00 -0.03 5.49 -17.43 -0.10 -0.13 16 20 N -0.91 -25.19 10.08 55.49 0.56 -24.63 16 21 Si 0.90 21.08 29.55 -169.99 -5.02 16.05 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 C 0.15 2.69 6.31 -3.26 -0.02 2.67 16 26 C -0.09 -1.33 1.15 -150.94 -0.17 -1.50 16 27 C -0.12 -1.44 7.65 37.16 0.28 -1.15 16 28 C 0.12 1.80 6.03 -1.15 -0.01 1.80 16 29 H 0.06 0.67 7.49 -51.93 -0.39 0.28 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 35 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.14 2.78 4.91 -51.92 -0.26 2.53 16 37 H 0.09 1.81 7.16 -51.93 -0.37 1.44 16 38 H 0.06 0.84 7.97 -51.93 -0.41 0.43 16 39 H 0.06 0.78 7.06 -51.93 -0.37 0.42 16 40 H 0.05 0.56 7.20 -51.93 -0.37 0.19 16 41 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.13 3.23 4.66 -51.93 -0.24 2.99 16 43 H 0.01 0.15 7.88 -51.93 -0.41 -0.26 16 44 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 45 H 0.02 0.34 7.88 -51.93 -0.41 -0.07 16 46 H 0.04 0.68 7.45 -51.93 -0.39 0.29 16 47 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.05 0.57 7.20 -51.93 -0.37 0.19 16 49 H 0.06 0.76 7.06 -51.93 -0.37 0.39 16 50 H 0.07 1.07 6.80 -51.93 -0.35 0.71 16 51 H 0.06 0.78 7.41 -51.93 -0.38 0.39 16 LS Contribution 395.60 15.07 5.96 5.96 Total: -1.00 -29.93 395.60 -7.85 -37.78 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -8.00 Total: 3.17 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: -0.92 Total: 3.26 kcal Atomic # 7 Polarization: -55.10 SS G_CDS: -0.17 Total: -55.27 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: 0.30 Total: -10.96 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -29.93 -7.85 -37.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982792972.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.717 kcal (2) G-P(sol) polarization free energy of solvation -29.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds