Wall clock time and date at job start Wed Apr 1 2020 05:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50701 * 109.46932 * 2 1 4 4 O 1.33488 * 126.82954 * 270.16505 * 3 2 1 5 5 N 1.20659 * 113.15681 * 180.31040 * 4 3 2 6 6 C 1.30013 * 112.29953 * 359.72467 * 5 4 3 7 7 C 1.50702 * 127.33389 * 179.97438 * 6 5 4 8 8 C 1.37355 * 126.82689 * 90.00471 * 3 2 1 9 9 C 1.47401 * 128.56642 * 359.97438 * 8 3 2 10 10 O 1.21606 * 120.00302 * 269.70838 * 9 8 3 11 11 N 1.34781 * 119.99340 * 89.70699 * 9 8 3 12 12 C 1.48662 * 125.78657 * 359.97438 * 11 9 8 13 13 C 1.53065 * 103.44376 * 155.64247 * 12 11 9 14 14 H 1.08997 * 111.35607 * 284.01593 * 13 12 11 15 15 C 1.51610 * 116.67886 * 155.89137 * 13 12 11 16 16 C 1.53810 * 107.02411 * 183.74150 * 15 13 12 17 17 C 1.52527 * 111.70509 * 57.53608 * 16 15 13 18 18 C 1.53848 * 111.65867 * 305.95389 * 17 16 15 19 19 H 1.08998 * 110.00784 * 297.78050 * 18 17 16 20 20 N 1.46496 * 109.93955 * 176.58046 * 18 17 16 21 21 C 1.36945 * 119.99718 * 87.40547 * 20 18 17 22 22 H 1.07997 * 119.99756 * 359.97438 * 21 20 18 23 23 C 1.38805 * 119.99878 * 179.97438 * 21 20 18 24 24 N 1.31624 * 120.00257 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99929 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47187 * 179.97438 * 25 23 21 27 27 H 1.48494 * 109.47141 * 300.00154 * 25 23 21 28 28 H 1.48498 * 109.47018 * 60.00200 * 25 23 21 29 29 C 1.51439 * 107.03693 * 57.19793 * 18 17 16 30 30 H 1.09004 * 109.87637 * 54.19624 * 29 18 17 31 31 C 1.48896 * 125.68796 * 180.46074 * 11 9 8 32 32 H 1.08997 * 109.47469 * 299.99797 * 1 2 3 33 33 H 1.09001 * 109.47271 * 59.99997 * 1 2 3 34 34 H 1.09005 * 109.47112 * 180.02562 * 1 2 3 35 35 H 1.08999 * 109.46904 * 239.99696 * 2 1 3 36 36 H 1.08996 * 109.46433 * 120.00231 * 2 1 3 37 37 H 1.08993 * 109.47076 * 270.03652 * 7 6 5 38 38 H 1.08999 * 109.47124 * 30.03937 * 7 6 5 39 39 H 1.08999 * 109.46975 * 150.03834 * 7 6 5 40 40 H 1.08996 * 110.62569 * 37.15594 * 12 11 9 41 41 H 1.09001 * 110.76308 * 274.19612 * 12 11 9 42 42 H 1.09009 * 109.94358 * 303.12090 * 15 13 12 43 43 H 1.08995 * 109.94796 * 64.27389 * 15 13 12 44 44 H 1.09007 * 109.03725 * 178.10567 * 16 15 13 45 45 H 1.08997 * 109.03506 * 296.96362 * 16 15 13 46 46 H 1.08997 * 109.04532 * 185.39305 * 17 16 15 47 47 H 1.08999 * 109.04293 * 66.51618 * 17 16 15 48 48 H 0.96996 * 120.00499 * 267.40278 * 20 18 17 49 49 H 0.97001 * 119.99885 * 179.97438 * 24 23 21 50 50 H 1.08999 * 110.55791 * 57.90728 * 31 11 9 51 51 H 1.09004 * 110.11389 * 295.89020 * 31 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2961 2.1763 -1.0685 5 7 2.6933 3.2794 -0.7833 6 6 2.7611 3.4623 0.5021 7 6 3.2100 4.7055 1.2260 8 6 2.3068 2.1970 1.0995 9 6 2.1826 1.8467 2.5258 10 8 1.1403 2.0584 3.1154 11 7 3.2242 1.2917 3.1765 12 6 4.5513 0.9775 2.5847 13 6 5.4897 0.9795 3.7940 14 1 5.7120 1.9948 4.1223 15 6 6.7660 0.1712 3.6665 16 6 7.4860 0.2494 5.0235 17 6 6.6065 -0.2638 6.1591 18 6 5.2465 0.4546 6.1932 19 1 5.3916 1.5193 6.3758 20 7 4.4033 -0.1218 7.2433 21 6 4.4813 0.3571 8.5239 22 1 5.1647 1.1593 8.7597 23 6 3.6819 -0.1887 9.5189 24 7 2.8493 -1.1668 9.2316 25 14 3.7888 0.4641 11.2659 26 1 2.8395 -0.2806 12.1315 27 1 5.1712 0.2847 11.7776 28 1 3.4403 1.9076 11.2771 29 6 4.6005 0.2460 4.8395 30 1 4.5582 -0.8185 4.6090 31 6 3.2352 0.8807 4.6076 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 -0.3633 -1.0277 0.0005 35 1 1.8933 -0.5139 -0.8900 36 1 1.8932 -0.5139 0.8900 37 1 4.2851 4.6573 1.3985 38 1 2.9780 5.5820 0.6209 39 1 2.6914 4.7765 2.1821 40 1 4.8446 1.7462 1.8699 41 1 4.5399 -0.0032 2.1092 42 1 6.5273 -0.8662 3.4316 43 1 7.3970 0.5934 2.8845 44 1 8.3949 -0.3506 4.9788 45 1 7.7556 1.2864 5.2236 46 1 7.1188 -0.1006 7.1073 47 1 6.4409 -1.3328 6.0253 48 1 3.7896 -0.8426 7.0317 49 1 2.2910 -1.5484 9.9270 50 1 2.4454 0.1555 4.8036 51 1 3.1127 1.7534 5.2492 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992902594.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:41 Heat of formation + Delta-G solvation = 24.700606 kcal Electronic energy + Delta-G solvation = -31879.120498 eV Core-core repulsion = 27781.344816 eV Total energy + Delta-G solvation = -4097.775681 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -45.05956 -40.40026 -38.62986 -35.55452 -35.06072 -34.72154 -34.02061 -31.58767 -30.99799 -30.16536 -29.06733 -28.89922 -26.84957 -25.65567 -24.28515 -23.71886 -23.04873 -21.01892 -20.56517 -20.32862 -19.79025 -19.36353 -18.01673 -17.58724 -17.10300 -16.46814 -16.05736 -15.59097 -14.98881 -14.90015 -14.41815 -14.22890 -14.12998 -14.05333 -13.68071 -13.63343 -13.40622 -13.17813 -13.10546 -12.85303 -12.76538 -12.63039 -12.42788 -12.20429 -11.94425 -11.89827 -11.74289 -11.50390 -11.14105 -11.02528 -10.91902 -10.83311 -10.56106 -10.32127 -10.26793 -10.22729 -10.18633 -10.02137 -9.82425 -9.57801 -9.49294 -8.90542 -8.65003 -6.99243 -5.78249 -3.07585 1.10909 1.71418 2.37123 2.58902 3.01454 3.43225 3.48127 3.48830 3.86567 4.00752 4.30288 4.46875 4.56060 4.62155 4.77362 4.78306 4.82450 4.93751 5.00388 5.19188 5.21230 5.23696 5.31248 5.32125 5.38473 5.43368 5.48012 5.51355 5.53441 5.56527 5.64265 5.65912 5.77720 5.81215 5.81879 5.88739 5.91398 6.01651 6.02890 6.09183 6.17536 6.29622 6.37917 6.47694 6.54390 6.59319 6.82552 7.04089 7.44772 7.68064 8.01860 8.07218 8.39739 9.51353 10.07098 10.41669 11.44010 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012927 B = 0.002934 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.457671 B = 9540.123285 C =10313.336716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.046 4.046 3 C 0.018 3.982 4 O 0.096 5.904 5 N -0.357 5.357 6 C 0.054 3.946 7 C -0.078 4.078 8 C -0.237 4.237 9 C 0.609 3.391 10 O -0.523 6.523 11 N -0.611 5.611 12 C 0.113 3.887 13 C -0.105 4.105 14 H 0.086 0.914 15 C -0.100 4.100 16 C -0.114 4.114 17 C -0.138 4.138 18 C 0.196 3.804 19 H 0.052 0.948 20 N -0.722 5.722 21 C -0.241 4.241 22 H 0.069 0.931 23 C -0.010 4.010 24 N -0.931 5.931 25 Si 0.905 3.095 26 H -0.291 1.291 27 H -0.287 1.287 28 H -0.286 1.286 29 C -0.103 4.103 30 H 0.078 0.922 31 C 0.127 3.873 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.065 0.935 43 H 0.060 0.940 44 H 0.054 0.946 45 H 0.056 0.944 46 H 0.061 0.939 47 H 0.054 0.946 48 H 0.384 0.616 49 H 0.256 0.744 50 H 0.077 0.923 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.189 3.401 -21.408 22.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.084 4.084 3 C -0.046 4.046 4 O 0.034 5.966 5 N -0.064 5.064 6 C -0.108 4.108 7 C -0.136 4.136 8 C -0.244 4.244 9 C 0.395 3.605 10 O -0.399 6.399 11 N -0.345 5.345 12 C -0.010 4.010 13 C -0.125 4.125 14 H 0.105 0.895 15 C -0.138 4.138 16 C -0.153 4.153 17 C -0.179 4.179 18 C 0.085 3.915 19 H 0.070 0.930 20 N -0.362 5.362 21 C -0.372 4.372 22 H 0.087 0.913 23 C -0.206 4.206 24 N -0.579 5.579 25 Si 0.736 3.264 26 H -0.217 1.217 27 H -0.213 1.213 28 H -0.213 1.213 29 C -0.123 4.123 30 H 0.097 0.903 31 C 0.007 3.993 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.113 0.887 36 H 0.116 0.884 37 H 0.104 0.896 38 H 0.101 0.899 39 H 0.104 0.896 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.084 0.916 43 H 0.079 0.921 44 H 0.073 0.927 45 H 0.074 0.926 46 H 0.080 0.920 47 H 0.073 0.927 48 H 0.218 0.782 49 H 0.066 0.934 50 H 0.095 0.905 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.818 4.383 -21.989 22.744 hybrid contribution -0.172 -0.225 1.684 1.708 sum 3.646 4.157 -20.305 21.044 Atomic orbital electron populations 1.21801 0.92745 1.03174 1.03262 1.20247 0.97385 0.85707 1.05035 1.24646 0.98705 0.96138 0.85083 1.84513 1.61534 1.17588 1.32942 1.73605 1.17476 0.98765 1.16560 1.24741 1.00355 0.96730 0.88988 1.20234 1.02198 0.91304 0.99842 1.21913 1.12117 0.95318 0.95100 1.16461 0.82755 0.77614 0.83684 1.90859 1.27873 1.53632 1.67556 1.49328 1.12483 1.60238 1.12441 1.22058 0.82146 1.00679 0.96116 1.22084 0.94881 1.00756 0.94773 0.89525 1.21312 0.95127 0.99682 0.97702 1.21538 0.98254 1.01132 0.94349 1.22328 0.97730 1.00618 0.97200 1.19941 0.89332 0.96372 0.85812 0.93039 1.42387 1.45934 1.42881 1.04978 1.19163 1.18311 1.14334 0.85435 0.91274 1.24721 0.99106 0.98742 0.98072 1.69642 1.27613 1.27916 1.32746 0.86308 0.77125 0.78155 0.84827 1.21722 1.21328 1.21258 1.22190 0.92859 0.99799 0.97478 0.90328 1.21798 0.98198 1.00374 0.78941 0.91460 0.91963 0.90846 0.88709 0.88399 0.89616 0.89936 0.89626 0.91073 0.91116 0.91604 0.92123 0.92676 0.92559 0.91973 0.92702 0.78209 0.93440 0.90458 0.90404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.89 37.16 0.37 -0.87 16 2 C -0.05 -0.37 6.38 -27.88 -0.18 -0.55 16 3 C 0.02 0.19 6.80 -34.63 -0.24 -0.04 16 4 O 0.10 1.11 11.06 18.66 0.21 1.31 16 5 N -0.36 -4.48 12.01 34.78 0.42 -4.07 16 6 C 0.05 0.66 7.59 -79.77 -0.61 0.05 16 7 C -0.08 -0.75 10.49 36.01 0.38 -0.38 16 8 C -0.24 -3.05 5.18 -102.89 -0.53 -3.58 16 9 C 0.61 9.26 7.65 -12.53 -0.10 9.16 16 10 O -0.52 -10.05 17.45 5.27 0.09 -9.96 16 11 N -0.61 -8.44 3.40 -171.58 -0.58 -9.02 16 12 C 0.11 1.21 6.33 -2.81 -0.02 1.19 16 13 C -0.11 -1.20 2.51 -89.90 -0.23 -1.42 16 14 H 0.09 1.03 8.01 -51.93 -0.42 0.61 16 15 C -0.10 -1.02 5.71 -27.01 -0.15 -1.17 16 16 C -0.11 -1.36 5.83 -26.55 -0.15 -1.52 16 17 C -0.14 -2.20 5.47 -26.53 -0.15 -2.34 16 18 C 0.20 3.51 2.52 -68.28 -0.17 3.33 16 19 H 0.05 0.97 7.98 -51.93 -0.41 0.55 16 20 N -0.72 -16.89 5.04 -53.77 -0.27 -17.16 16 21 C -0.24 -6.42 9.95 -15.06 -0.15 -6.57 16 22 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 23 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 24 N -0.93 -27.50 13.06 55.49 0.72 -26.77 16 25 Si 0.90 22.07 29.55 -169.99 -5.02 17.05 16 26 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 27 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 28 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 29 C -0.10 -1.51 1.80 -90.36 -0.16 -1.68 16 30 H 0.08 1.16 7.92 -51.93 -0.41 0.75 16 31 C 0.13 2.05 6.56 -3.05 -0.02 2.03 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.10 0.81 8.11 -51.93 -0.42 0.39 16 37 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.07 0.70 7.74 -51.93 -0.40 0.30 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.07 0.66 7.98 -51.92 -0.41 0.24 16 43 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 47 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 48 H 0.38 9.66 7.81 -40.82 -0.32 9.34 16 49 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 50 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 51 H 0.08 1.42 8.08 -51.93 -0.42 1.00 16 LS Contribution 412.81 15.07 6.22 6.22 Total: -1.00 -31.88 412.81 -9.10 -40.97 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: -8.68 Total: 6.16 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: -2.20 Total: -4.74 kcal Atomic # 7 Polarization: -57.31 SS G_CDS: 0.29 Total: -57.02 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: 0.30 Total: -8.65 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -31.88 -9.10 -40.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992902594.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.675 kcal (2) G-P(sol) polarization free energy of solvation -31.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds