Wall clock time and date at job start Wed Apr 1 2020 05:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50701 * 109.46932 * 2 1 4 4 O 1.33488 * 126.82954 * 270.16505 * 3 2 1 5 5 N 1.20659 * 113.15681 * 180.31040 * 4 3 2 6 6 C 1.30013 * 112.29953 * 359.72467 * 5 4 3 7 7 C 1.50702 * 127.33389 * 179.97438 * 6 5 4 8 8 C 1.37355 * 126.82689 * 90.00471 * 3 2 1 9 9 C 1.47401 * 128.56642 * 359.97438 * 8 3 2 10 10 O 1.21606 * 120.00302 * 269.70838 * 9 8 3 11 11 N 1.34781 * 119.99340 * 89.70699 * 9 8 3 12 12 C 1.48662 * 125.78657 * 359.97438 * 11 9 8 13 13 C 1.53065 * 103.44376 * 155.64247 * 12 11 9 14 14 H 1.08997 * 111.35607 * 284.01593 * 13 12 11 15 15 C 1.51610 * 116.67886 * 155.89137 * 13 12 11 16 16 C 1.53810 * 107.02411 * 183.74150 * 15 13 12 17 17 C 1.52527 * 111.70509 * 57.53608 * 16 15 13 18 18 C 1.53848 * 111.65867 * 305.95389 * 17 16 15 19 19 H 1.08998 * 110.00784 * 297.78050 * 18 17 16 20 20 N 1.46496 * 109.93955 * 176.58046 * 18 17 16 21 21 C 1.36945 * 119.99718 * 87.40547 * 20 18 17 22 22 H 1.07997 * 119.99756 * 359.97438 * 21 20 18 23 23 C 1.38805 * 119.99878 * 179.97438 * 21 20 18 24 24 N 1.31624 * 120.00257 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99929 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47187 * 179.97438 * 25 23 21 27 27 H 1.48494 * 109.47141 * 300.00154 * 25 23 21 28 28 H 1.48498 * 109.47018 * 60.00200 * 25 23 21 29 29 C 1.51439 * 107.03693 * 57.19793 * 18 17 16 30 30 H 1.09004 * 109.87637 * 54.19624 * 29 18 17 31 31 C 1.48896 * 125.68796 * 180.46074 * 11 9 8 32 32 H 1.08997 * 109.47469 * 299.99797 * 1 2 3 33 33 H 1.09001 * 109.47271 * 59.99997 * 1 2 3 34 34 H 1.09005 * 109.47112 * 180.02562 * 1 2 3 35 35 H 1.08999 * 109.46904 * 239.99696 * 2 1 3 36 36 H 1.08996 * 109.46433 * 120.00231 * 2 1 3 37 37 H 1.08993 * 109.47076 * 270.03652 * 7 6 5 38 38 H 1.08999 * 109.47124 * 30.03937 * 7 6 5 39 39 H 1.08999 * 109.46975 * 150.03834 * 7 6 5 40 40 H 1.08996 * 110.62569 * 37.15594 * 12 11 9 41 41 H 1.09001 * 110.76308 * 274.19612 * 12 11 9 42 42 H 1.09009 * 109.94358 * 303.12090 * 15 13 12 43 43 H 1.08995 * 109.94796 * 64.27389 * 15 13 12 44 44 H 1.09007 * 109.03725 * 178.10567 * 16 15 13 45 45 H 1.08997 * 109.03506 * 296.96362 * 16 15 13 46 46 H 1.08997 * 109.04532 * 185.39305 * 17 16 15 47 47 H 1.08999 * 109.04293 * 66.51618 * 17 16 15 48 48 H 0.96996 * 120.00499 * 267.40278 * 20 18 17 49 49 H 0.97001 * 119.99885 * 179.97438 * 24 23 21 50 50 H 1.08999 * 110.55791 * 57.90728 * 31 11 9 51 51 H 1.09004 * 110.11389 * 295.89020 * 31 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2961 2.1763 -1.0685 5 7 2.6933 3.2794 -0.7833 6 6 2.7611 3.4623 0.5021 7 6 3.2100 4.7055 1.2260 8 6 2.3068 2.1970 1.0995 9 6 2.1826 1.8467 2.5258 10 8 1.1403 2.0584 3.1154 11 7 3.2242 1.2917 3.1765 12 6 4.5513 0.9775 2.5847 13 6 5.4897 0.9795 3.7940 14 1 5.7120 1.9948 4.1223 15 6 6.7660 0.1712 3.6665 16 6 7.4860 0.2494 5.0235 17 6 6.6065 -0.2638 6.1591 18 6 5.2465 0.4546 6.1932 19 1 5.3916 1.5193 6.3758 20 7 4.4033 -0.1218 7.2433 21 6 4.4813 0.3571 8.5239 22 1 5.1647 1.1593 8.7597 23 6 3.6819 -0.1887 9.5189 24 7 2.8493 -1.1668 9.2316 25 14 3.7888 0.4641 11.2659 26 1 2.8395 -0.2806 12.1315 27 1 5.1712 0.2847 11.7776 28 1 3.4403 1.9076 11.2771 29 6 4.6005 0.2460 4.8395 30 1 4.5582 -0.8185 4.6090 31 6 3.2352 0.8807 4.6076 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 -0.3633 -1.0277 0.0005 35 1 1.8933 -0.5139 -0.8900 36 1 1.8932 -0.5139 0.8900 37 1 4.2851 4.6573 1.3985 38 1 2.9780 5.5820 0.6209 39 1 2.6914 4.7765 2.1821 40 1 4.8446 1.7462 1.8699 41 1 4.5399 -0.0032 2.1092 42 1 6.5273 -0.8662 3.4316 43 1 7.3970 0.5934 2.8845 44 1 8.3949 -0.3506 4.9788 45 1 7.7556 1.2864 5.2236 46 1 7.1188 -0.1006 7.1073 47 1 6.4409 -1.3328 6.0253 48 1 3.7896 -0.8426 7.0317 49 1 2.2910 -1.5484 9.9270 50 1 2.4454 0.1555 4.8036 51 1 3.1127 1.7534 5.2492 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992902594.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:40 Heat of formation + Delta-G solvation = 6.041254 kcal Electronic energy + Delta-G solvation = -31879.929628 eV Core-core repulsion = 27781.344816 eV Total energy + Delta-G solvation = -4098.584812 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -45.97602 -41.57932 -39.87768 -36.95151 -35.86683 -35.62480 -35.55996 -33.29021 -32.07918 -31.12652 -30.51965 -29.80120 -28.12427 -26.77270 -25.62439 -24.86710 -24.25783 -22.15017 -21.71341 -21.30668 -21.04545 -20.40210 -19.20502 -18.91088 -18.48259 -17.57394 -17.20265 -16.72614 -16.60512 -15.77483 -15.74568 -15.57916 -15.31742 -15.09409 -14.89006 -14.73801 -14.38740 -14.26578 -14.09576 -13.91868 -13.85170 -13.63322 -13.51644 -13.46076 -13.26008 -12.85162 -12.80953 -12.60548 -12.58964 -12.53455 -12.23895 -12.03489 -11.89956 -11.87854 -11.71746 -11.51688 -11.40004 -11.26052 -10.98883 -10.88753 -10.82016 -10.49464 -9.86373 -8.97134 -7.92265 -5.19607 0.21623 0.78161 1.20780 1.46576 1.48864 1.54563 1.57977 2.01450 2.56752 2.97554 3.16182 3.26304 3.40468 3.49469 3.66318 3.76359 3.83978 4.06548 4.09612 4.17889 4.19876 4.22880 4.27264 4.40911 4.42506 4.45362 4.51689 4.53761 4.62505 4.63125 4.65351 4.69187 4.72773 4.75512 4.84639 4.88023 4.90923 4.98471 5.02398 5.07576 5.10402 5.25259 5.29221 5.32494 5.38289 5.43195 5.52689 5.53769 5.71128 6.29824 6.31143 6.87805 7.12468 7.36451 8.13340 8.35200 9.30794 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012927 B = 0.002934 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.457671 B = 9540.123285 C =10313.336716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.047 4.047 3 C 0.038 3.962 4 O 0.098 5.902 5 N -0.370 5.370 6 C 0.053 3.947 7 C -0.079 4.079 8 C -0.263 4.263 9 C 0.613 3.387 10 O -0.576 6.576 11 N -0.605 5.605 12 C 0.115 3.885 13 C -0.090 4.090 14 H 0.085 0.915 15 C -0.092 4.092 16 C -0.108 4.108 17 C -0.128 4.128 18 C 0.191 3.809 19 H 0.041 0.959 20 N -0.735 5.735 21 C -0.235 4.235 22 H 0.073 0.927 23 C -0.074 4.074 24 N -0.968 5.968 25 Si 0.965 3.035 26 H -0.298 1.298 27 H -0.277 1.277 28 H -0.282 1.282 29 C -0.098 4.098 30 H 0.082 0.918 31 C 0.133 3.867 32 H 0.034 0.966 33 H 0.069 0.931 34 H 0.093 0.907 35 H 0.130 0.870 36 H 0.097 0.903 37 H 0.105 0.895 38 H 0.095 0.905 39 H 0.073 0.927 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.074 0.926 43 H 0.094 0.906 44 H 0.073 0.927 45 H 0.062 0.938 46 H 0.037 0.963 47 H 0.046 0.954 48 H 0.372 0.628 49 H 0.249 0.751 50 H 0.051 0.949 51 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.623 3.519 -24.188 25.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.084 4.084 3 C -0.026 4.026 4 O 0.038 5.962 5 N -0.077 5.077 6 C -0.109 4.109 7 C -0.136 4.136 8 C -0.271 4.271 9 C 0.400 3.600 10 O -0.456 6.456 11 N -0.337 5.337 12 C -0.006 4.006 13 C -0.110 4.110 14 H 0.103 0.897 15 C -0.130 4.130 16 C -0.147 4.147 17 C -0.168 4.168 18 C 0.082 3.918 19 H 0.059 0.941 20 N -0.374 5.374 21 C -0.367 4.367 22 H 0.091 0.909 23 C -0.266 4.266 24 N -0.619 5.619 25 Si 0.795 3.205 26 H -0.224 1.224 27 H -0.203 1.203 28 H -0.208 1.208 29 C -0.117 4.117 30 H 0.101 0.899 31 C 0.011 3.989 32 H 0.053 0.947 33 H 0.088 0.912 34 H 0.111 0.889 35 H 0.148 0.852 36 H 0.115 0.885 37 H 0.124 0.876 38 H 0.114 0.886 39 H 0.092 0.908 40 H 0.110 0.890 41 H 0.112 0.888 42 H 0.093 0.907 43 H 0.113 0.887 44 H 0.092 0.908 45 H 0.080 0.920 46 H 0.056 0.944 47 H 0.065 0.935 48 H 0.204 0.796 49 H 0.058 0.942 50 H 0.070 0.930 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 6.334 4.522 -24.822 26.013 hybrid contribution -0.926 -0.235 2.500 2.676 sum 5.408 4.287 -22.322 23.365 Atomic orbital electron populations 1.21790 0.92892 1.04115 1.02010 1.20459 0.97099 0.84189 1.06700 1.25093 0.96483 0.96755 0.84234 1.84508 1.61357 1.17435 1.32863 1.73602 1.18318 0.99254 1.16559 1.25075 0.99837 0.97060 0.88952 1.20337 1.03228 0.90894 0.99181 1.21686 1.14810 0.96621 0.93954 1.16750 0.82048 0.76659 0.84497 1.90827 1.29984 1.55795 1.68952 1.49329 1.13647 1.59359 1.11380 1.22290 0.79728 1.02657 0.95945 1.22082 0.95060 1.00443 0.93369 0.89661 1.21309 0.94207 1.00150 0.97321 1.21485 0.98062 1.01551 0.93565 1.22135 0.96592 0.99907 0.98201 1.20172 0.90128 0.95555 0.85938 0.94075 1.42589 1.46751 1.42701 1.05332 1.19536 1.16997 1.13398 0.86788 0.90890 1.25457 0.99707 0.99712 1.01743 1.69797 1.29036 1.29721 1.33358 0.85334 0.77149 0.77446 0.80599 1.22447 1.20331 1.20815 1.22006 0.92662 1.00332 0.96744 0.89924 1.21519 0.98538 0.98511 0.80307 0.94669 0.91203 0.88868 0.85181 0.88499 0.87635 0.88625 0.90829 0.89014 0.88782 0.90740 0.88731 0.90787 0.91966 0.94375 0.93517 0.79609 0.94225 0.93003 0.93403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 9.89 71.98 0.71 -1.55 16 2 C -0.05 -0.64 6.38 29.85 0.19 -0.45 16 3 C 0.04 0.76 6.80 25.48 0.17 0.93 16 4 O 0.10 2.05 11.06 77.03 0.85 2.90 16 5 N -0.37 -8.55 12.01 -44.78 -0.54 -9.09 16 6 C 0.05 1.21 7.59 45.16 0.34 1.55 16 7 C -0.08 -1.41 10.49 71.24 0.75 -0.66 16 8 C -0.26 -6.52 5.18 -18.74 -0.10 -6.61 16 9 C 0.61 18.87 7.65 86.66 0.66 19.54 16 10 O -0.58 -23.35 17.45 -4.05 -0.07 -23.42 16 11 N -0.60 -16.50 3.40 -815.00 -2.77 -19.27 16 12 C 0.11 2.11 6.33 85.98 0.54 2.65 16 13 C -0.09 -1.80 2.51 -10.33 -0.03 -1.82 16 14 H 0.09 1.79 8.01 -2.39 -0.02 1.77 16 15 C -0.09 -1.45 5.71 30.41 0.17 -1.28 16 16 C -0.11 -2.23 5.83 30.71 0.18 -2.05 16 17 C -0.13 -3.97 5.47 30.72 0.17 -3.80 16 18 C 0.19 6.89 2.52 44.77 0.11 7.00 16 19 H 0.04 1.57 7.98 -2.39 -0.02 1.55 16 20 N -0.73 -35.63 5.04 -324.03 -1.63 -37.26 16 21 C -0.24 -12.84 9.95 84.03 0.84 -12.00 16 22 H 0.07 3.84 7.83 -2.91 -0.02 3.82 16 23 C -0.07 -4.23 5.50 84.86 0.47 -3.77 16 24 N -0.97 -59.29 13.06 21.65 0.28 -59.01 16 25 Si 0.97 46.42 29.55 68.60 2.03 48.45 16 26 H -0.30 -14.55 7.11 99.48 0.71 -13.85 16 27 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 28 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 29 C -0.10 -2.83 1.80 -10.62 -0.02 -2.85 16 30 H 0.08 2.37 7.92 -2.39 -0.02 2.35 16 31 C 0.13 4.47 6.56 85.70 0.56 5.03 16 32 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 35 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.10 1.40 8.11 -2.39 -0.02 1.38 16 37 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.09 1.41 7.74 -2.39 -0.02 1.40 16 41 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.07 1.12 7.98 -2.38 -0.02 1.11 16 43 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 45 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 46 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 47 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 48 H 0.37 19.61 7.81 -92.71 -0.72 18.89 16 49 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 50 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 51 H 0.05 1.87 8.08 -2.39 -0.02 1.85 16 Total: -1.00 -73.54 412.81 4.08 -69.46 By element: Atomic # 1 Polarization: 27.19 SS G_CDS: 0.20 Total: 27.39 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: 5.73 Total: -0.14 kcal Atomic # 7 Polarization: -119.98 SS G_CDS: -4.66 Total: -124.63 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: 0.78 Total: -20.52 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.45 kcal Total: -73.54 4.08 -69.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992902594.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.497 kcal (2) G-P(sol) polarization free energy of solvation -73.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds