Wall clock time and date at job start Wed Apr 1 2020 05:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50706 * 109.46925 * 2 1 4 4 N 1.30013 * 127.33065 * 90.02913 * 3 2 1 5 5 O 1.20661 * 112.29570 * 179.97438 * 4 3 2 6 6 C 1.33493 * 113.15824 * 0.02562 * 5 4 3 7 7 C 1.50701 * 126.82617 * 180.02562 * 6 5 4 8 8 C 1.37360 * 106.34237 * 359.73602 * 6 5 4 9 9 C 1.47395 * 128.56547 * 180.25775 * 8 6 5 10 10 O 1.21609 * 120.00094 * 270.13966 * 9 8 6 11 11 N 1.34780 * 119.99949 * 90.14016 * 9 8 6 12 12 C 1.47679 * 125.79586 * 0.02562 * 11 9 8 13 13 C 1.55676 * 104.33819 * 205.39466 * 12 11 9 14 14 H 1.08995 * 112.68619 * 200.90585 * 13 12 11 15 15 C 1.52911 * 107.12364 * 76.12684 * 13 12 11 16 16 C 1.52280 * 110.13821 * 193.16688 * 15 13 12 17 17 C 1.51801 * 110.56780 * 61.37162 * 16 15 13 18 18 C 1.50793 * 113.09916 * 307.28988 * 17 16 15 19 19 H 1.09003 * 108.00709 * 164.47283 * 18 17 16 20 20 N 1.46505 * 108.16128 * 281.16889 * 18 17 16 21 21 C 1.36935 * 120.00121 * 281.46147 * 20 18 17 22 22 H 1.08006 * 119.99676 * 359.97438 * 21 20 18 23 23 C 1.38809 * 120.00417 * 180.02562 * 21 20 18 24 24 N 1.31627 * 119.99639 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00534 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.46620 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.46958 * 119.99655 * 25 23 21 28 28 H 1.48499 * 109.47238 * 239.99912 * 25 23 21 29 29 C 1.49861 * 116.06260 * 42.87630 * 18 17 16 30 30 H 1.09002 * 108.36568 * 197.45685 * 29 18 17 31 31 C 1.47486 * 125.79707 * 179.71389 * 11 9 8 32 32 H 1.09004 * 109.46930 * 299.99901 * 1 2 3 33 33 H 1.09004 * 109.47059 * 59.99503 * 1 2 3 34 34 H 1.08992 * 109.47060 * 179.97438 * 1 2 3 35 35 H 1.09000 * 109.46497 * 240.00263 * 2 1 3 36 36 H 1.09000 * 109.47312 * 120.00043 * 2 1 3 37 37 H 1.08998 * 109.47532 * 359.97035 * 7 6 5 38 38 H 1.08997 * 109.47625 * 119.97433 * 7 6 5 39 39 H 1.09008 * 109.46890 * 239.96982 * 7 6 5 40 40 H 1.09003 * 110.45842 * 324.11353 * 12 11 9 41 41 H 1.09001 * 110.45941 * 86.54947 * 12 11 9 42 42 H 1.08996 * 109.36304 * 313.37122 * 15 13 12 43 43 H 1.08997 * 109.36198 * 72.96593 * 15 13 12 44 44 H 1.09001 * 109.25877 * 301.09003 * 16 15 13 45 45 H 1.08998 * 109.25644 * 181.64855 * 16 15 13 46 46 H 1.08993 * 108.75922 * 186.35405 * 17 16 15 47 47 H 1.09000 * 108.66421 * 68.15231 * 17 16 15 48 48 H 0.97007 * 120.00093 * 101.45916 * 20 18 17 49 49 H 0.97000 * 119.99621 * 180.02562 * 24 23 21 50 50 H 1.08996 * 110.03476 * 298.12426 * 31 11 9 51 51 H 1.08996 * 110.03420 * 59.56456 * 31 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2956 2.1641 1.0338 5 8 2.6843 3.2626 0.7208 6 6 2.7464 3.4407 -0.6007 7 6 3.1876 4.6867 -1.3245 8 6 2.3345 2.2603 -1.1696 9 6 2.2211 1.9195 -2.5992 10 8 1.1815 2.1301 -3.1938 11 7 3.2697 1.3745 -3.2473 12 6 4.5860 1.0649 -2.6536 13 6 5.5708 1.1020 -3.8587 14 1 6.4925 0.5533 -3.6655 15 6 5.8135 2.5735 -4.1966 16 6 6.4981 2.6942 -5.5515 17 6 5.6206 2.1141 -6.6460 18 6 5.1611 0.7081 -6.3528 19 1 4.3353 0.4764 -7.0256 20 7 6.2647 -0.2059 -6.6576 21 6 6.5287 -0.5517 -7.9560 22 1 5.9230 -0.1508 -8.7554 23 6 7.5740 -1.4181 -8.2448 24 7 8.3118 -1.9070 -7.2705 25 14 7.9337 -1.8904 -10.0159 26 1 6.9668 -1.2112 -10.9153 27 1 9.3149 -1.4742 -10.3684 28 1 7.8050 -3.3615 -10.1719 29 6 4.7087 0.4425 -4.9490 30 1 4.7058 -0.6354 -4.7873 31 6 3.2953 0.9802 -4.6682 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3633 -1.0276 -0.0005 35 1 1.8932 -0.5138 -0.8900 36 1 1.8934 -0.5138 0.8900 37 1 3.4591 5.4523 -0.5977 38 1 4.0503 4.4575 -1.9500 39 1 2.3725 5.0518 -1.9495 40 1 4.8581 1.8196 -1.9157 41 1 4.5751 0.0746 -2.1983 42 1 4.8595 3.0997 -4.2257 43 1 6.4472 3.0204 -3.4306 44 1 7.4446 2.1543 -5.5255 45 1 6.6905 3.7457 -5.7646 46 1 6.1815 2.1118 -7.5805 47 1 4.7445 2.7515 -6.7652 48 1 6.8085 -0.5662 -5.9396 49 1 9.0425 -2.5122 -7.4723 50 1 2.5542 0.2027 -4.8534 51 1 3.0948 1.8458 -5.2996 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992905073.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:44:25 Heat of formation + Delta-G solvation = 25.995173 kcal Electronic energy + Delta-G solvation = -32108.067141 eV Core-core repulsion = 28010.347596 eV Total energy + Delta-G solvation = -4097.719545 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -45.09934 -40.62628 -38.66006 -35.69935 -35.54907 -33.90218 -33.56653 -31.69756 -31.57053 -30.76645 -29.35719 -28.28291 -26.71089 -25.67230 -24.65255 -23.76714 -22.69049 -21.95997 -21.14975 -20.36539 -19.55520 -18.31411 -18.00219 -17.43115 -17.13747 -16.58108 -16.06897 -15.76693 -15.15761 -14.71372 -14.55716 -14.51027 -14.10193 -13.95649 -13.70127 -13.60457 -13.57845 -13.38405 -13.11501 -12.98094 -12.85062 -12.64787 -12.44075 -11.94096 -11.88389 -11.79623 -11.77550 -11.40671 -11.28886 -11.11623 -10.99916 -10.88492 -10.80533 -10.36501 -10.17948 -10.11082 -10.09024 -9.85663 -9.67921 -9.57716 -9.55961 -8.89735 -8.72238 -6.97739 -5.79856 -3.07837 1.06548 1.67855 2.26474 2.55869 2.97997 3.40738 3.47262 3.48797 3.77992 3.98833 4.32283 4.51257 4.54576 4.64004 4.77585 4.83108 4.88799 4.94465 5.01041 5.03636 5.09133 5.22256 5.22860 5.33181 5.35182 5.51105 5.52595 5.55280 5.55553 5.59835 5.61342 5.71833 5.72722 5.76309 5.84266 5.88799 5.92381 5.98797 6.10302 6.15827 6.20064 6.33077 6.36315 6.47244 6.75723 6.76675 6.95121 7.10848 7.35339 7.68205 7.95598 7.98612 8.38886 9.50687 10.07287 10.42638 11.42833 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018217 B = 0.002683 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.637893 B =10433.832891 C =10987.758185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.047 4.047 3 C 0.060 3.940 4 N -0.355 5.355 5 O 0.096 5.904 6 C 0.016 3.984 7 C -0.080 4.080 8 C -0.241 4.241 9 C 0.612 3.388 10 O -0.529 6.529 11 N -0.602 5.602 12 C 0.100 3.900 13 C -0.087 4.087 14 H 0.104 0.896 15 C -0.107 4.107 16 C -0.108 4.108 17 C -0.127 4.127 18 C 0.189 3.811 19 H 0.042 0.958 20 N -0.725 5.725 21 C -0.235 4.235 22 H 0.070 0.930 23 C -0.013 4.013 24 N -0.933 5.933 25 Si 0.903 3.097 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.292 1.292 29 C -0.091 4.091 30 H 0.084 0.916 31 C 0.117 3.883 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.057 0.943 43 H 0.055 0.945 44 H 0.067 0.933 45 H 0.049 0.951 46 H 0.071 0.929 47 H 0.036 0.964 48 H 0.382 0.618 49 H 0.254 0.746 50 H 0.070 0.930 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.007 10.563 15.405 21.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.085 4.085 3 C -0.103 4.103 4 N -0.061 5.061 5 O 0.034 5.966 6 C -0.047 4.047 7 C -0.138 4.138 8 C -0.249 4.249 9 C 0.399 3.601 10 O -0.405 6.405 11 N -0.335 5.335 12 C -0.023 4.023 13 C -0.106 4.106 14 H 0.122 0.878 15 C -0.144 4.144 16 C -0.146 4.146 17 C -0.167 4.167 18 C 0.079 3.921 19 H 0.060 0.940 20 N -0.367 5.367 21 C -0.366 4.366 22 H 0.088 0.912 23 C -0.209 4.209 24 N -0.581 5.581 25 Si 0.735 3.265 26 H -0.206 1.206 27 H -0.220 1.220 28 H -0.220 1.220 29 C -0.110 4.110 30 H 0.102 0.898 31 C -0.005 4.005 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.106 0.894 36 H 0.105 0.895 37 H 0.109 0.891 38 H 0.114 0.886 39 H 0.114 0.886 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.086 0.914 45 H 0.068 0.932 46 H 0.089 0.911 47 H 0.055 0.945 48 H 0.216 0.784 49 H 0.064 0.936 50 H 0.089 0.911 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -10.703 10.508 16.238 22.106 hybrid contribution 0.498 -0.578 -1.489 1.673 sum -10.206 9.931 14.749 20.501 Atomic orbital electron populations 1.21730 0.93421 1.02630 1.02744 1.20004 0.96921 0.87433 1.04157 1.24737 1.00413 0.98688 0.86429 1.73599 1.16594 0.92575 1.23308 1.84537 1.62764 1.26737 1.22559 1.24588 0.98783 0.97632 0.83719 1.20495 1.03105 0.90768 0.99396 1.21824 1.12511 0.95376 0.95151 1.16432 0.82557 0.77432 0.83711 1.90829 1.28243 1.53800 1.67676 1.48556 1.12747 1.60344 1.11846 1.22714 0.82131 1.00754 0.96668 1.22282 0.97830 0.97319 0.93178 0.87838 1.21362 1.00338 0.94913 0.97814 1.20968 0.99953 0.99625 0.94041 1.21453 0.98398 0.97427 0.99407 1.18970 0.91768 0.90003 0.91343 0.93960 1.42537 1.34788 1.53406 1.06014 1.19251 1.11047 1.21569 0.84709 0.91209 1.24701 0.98655 1.00388 0.97156 1.69664 1.22016 1.36414 1.30037 0.86172 0.77704 0.77952 0.84706 1.20602 1.21967 1.21966 1.21498 0.92140 1.01080 0.96328 0.89801 1.22083 0.98083 1.00068 0.80245 0.92379 0.91834 0.91325 0.89433 0.89462 0.89138 0.88563 0.88562 0.90960 0.91177 0.92418 0.92588 0.91435 0.93234 0.91071 0.94479 0.78382 0.93644 0.91117 0.90883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.89 37.16 0.37 -0.98 16 2 C -0.05 -0.46 6.55 -27.88 -0.18 -0.64 16 3 C 0.06 0.70 6.84 -79.76 -0.55 0.15 16 4 N -0.35 -4.34 12.01 34.78 0.42 -3.92 16 5 O 0.10 1.06 11.06 18.65 0.21 1.27 16 6 C 0.02 0.16 7.55 -34.63 -0.26 -0.10 16 7 C -0.08 -0.54 10.33 36.01 0.37 -0.17 16 8 C -0.24 -2.90 5.14 -102.90 -0.53 -3.43 16 9 C 0.61 8.40 7.67 -12.53 -0.10 8.30 16 10 O -0.53 -9.00 17.45 5.27 0.09 -8.91 16 11 N -0.60 -7.54 2.89 -171.05 -0.49 -8.03 16 12 C 0.10 1.10 6.02 -1.97 -0.01 1.09 16 13 C -0.09 -1.09 3.64 -88.80 -0.32 -1.41 16 14 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 15 C -0.11 -1.28 4.90 -27.14 -0.13 -1.41 16 16 C -0.11 -1.56 5.89 -27.71 -0.16 -1.72 16 17 C -0.13 -2.09 5.34 -28.45 -0.15 -2.24 16 18 C 0.19 3.36 2.24 -70.59 -0.16 3.20 16 19 H 0.04 0.80 7.97 -51.93 -0.41 0.39 16 20 N -0.73 -16.52 4.99 -56.04 -0.28 -16.80 16 21 C -0.23 -6.13 9.42 -15.06 -0.14 -6.27 16 22 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 23 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 24 N -0.93 -26.97 13.06 55.49 0.72 -26.24 16 25 Si 0.90 21.77 29.55 -169.99 -5.02 16.74 16 26 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 27 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 28 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 29 C -0.09 -1.33 2.05 -91.32 -0.19 -1.51 16 30 H 0.08 1.34 8.05 -51.93 -0.42 0.92 16 31 C 0.12 1.59 5.82 -3.08 -0.02 1.57 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.10 0.64 8.14 -51.92 -0.42 0.22 16 40 H 0.07 0.71 7.55 -51.93 -0.39 0.32 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.06 0.68 7.16 -51.93 -0.37 0.31 16 43 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 46 H 0.07 1.36 7.62 -51.93 -0.40 0.96 16 47 H 0.04 0.55 8.09 -51.93 -0.42 0.13 16 48 H 0.38 9.27 7.73 -40.82 -0.32 8.95 16 49 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 50 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 51 H 0.07 1.02 7.86 -51.93 -0.41 0.61 16 LS Contribution 409.28 15.07 6.17 6.17 Total: -1.00 -31.09 409.28 -9.05 -40.14 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -8.60 Total: 5.61 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: -2.26 Total: -6.02 kcal Atomic # 7 Polarization: -55.36 SS G_CDS: 0.37 Total: -54.99 kcal Atomic # 8 Polarization: -7.94 SS G_CDS: 0.30 Total: -7.64 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -31.09 -9.05 -40.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992905073.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.133 kcal (2) G-P(sol) polarization free energy of solvation -31.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds