Wall clock time and date at job start Wed Apr 1 2020 05:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50706 * 109.46925 * 2 1 4 4 N 1.30013 * 127.33065 * 90.02913 * 3 2 1 5 5 O 1.20661 * 112.29570 * 179.97438 * 4 3 2 6 6 C 1.33493 * 113.15824 * 0.02562 * 5 4 3 7 7 C 1.50701 * 126.82617 * 180.02562 * 6 5 4 8 8 C 1.37360 * 106.34237 * 359.73602 * 6 5 4 9 9 C 1.47395 * 128.56547 * 180.25775 * 8 6 5 10 10 O 1.21609 * 120.00094 * 270.13966 * 9 8 6 11 11 N 1.34780 * 119.99949 * 90.14016 * 9 8 6 12 12 C 1.47679 * 125.79586 * 0.02562 * 11 9 8 13 13 C 1.55676 * 104.33819 * 205.39466 * 12 11 9 14 14 H 1.08995 * 112.68619 * 200.90585 * 13 12 11 15 15 C 1.52911 * 107.12364 * 76.12684 * 13 12 11 16 16 C 1.52280 * 110.13821 * 193.16688 * 15 13 12 17 17 C 1.51801 * 110.56780 * 61.37162 * 16 15 13 18 18 C 1.50793 * 113.09916 * 307.28988 * 17 16 15 19 19 H 1.09003 * 108.00709 * 164.47283 * 18 17 16 20 20 N 1.46505 * 108.16128 * 281.16889 * 18 17 16 21 21 C 1.36935 * 120.00121 * 281.46147 * 20 18 17 22 22 H 1.08006 * 119.99676 * 359.97438 * 21 20 18 23 23 C 1.38809 * 120.00417 * 180.02562 * 21 20 18 24 24 N 1.31627 * 119.99639 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00534 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.46620 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.46958 * 119.99655 * 25 23 21 28 28 H 1.48499 * 109.47238 * 239.99912 * 25 23 21 29 29 C 1.49861 * 116.06260 * 42.87630 * 18 17 16 30 30 H 1.09002 * 108.36568 * 197.45685 * 29 18 17 31 31 C 1.47486 * 125.79707 * 179.71389 * 11 9 8 32 32 H 1.09004 * 109.46930 * 299.99901 * 1 2 3 33 33 H 1.09004 * 109.47059 * 59.99503 * 1 2 3 34 34 H 1.08992 * 109.47060 * 179.97438 * 1 2 3 35 35 H 1.09000 * 109.46497 * 240.00263 * 2 1 3 36 36 H 1.09000 * 109.47312 * 120.00043 * 2 1 3 37 37 H 1.08998 * 109.47532 * 359.97035 * 7 6 5 38 38 H 1.08997 * 109.47625 * 119.97433 * 7 6 5 39 39 H 1.09008 * 109.46890 * 239.96982 * 7 6 5 40 40 H 1.09003 * 110.45842 * 324.11353 * 12 11 9 41 41 H 1.09001 * 110.45941 * 86.54947 * 12 11 9 42 42 H 1.08996 * 109.36304 * 313.37122 * 15 13 12 43 43 H 1.08997 * 109.36198 * 72.96593 * 15 13 12 44 44 H 1.09001 * 109.25877 * 301.09003 * 16 15 13 45 45 H 1.08998 * 109.25644 * 181.64855 * 16 15 13 46 46 H 1.08993 * 108.75922 * 186.35405 * 17 16 15 47 47 H 1.09000 * 108.66421 * 68.15231 * 17 16 15 48 48 H 0.97007 * 120.00093 * 101.45916 * 20 18 17 49 49 H 0.97000 * 119.99621 * 180.02562 * 24 23 21 50 50 H 1.08996 * 110.03476 * 298.12426 * 31 11 9 51 51 H 1.08996 * 110.03420 * 59.56456 * 31 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2956 2.1641 1.0338 5 8 2.6843 3.2626 0.7208 6 6 2.7464 3.4407 -0.6007 7 6 3.1876 4.6867 -1.3245 8 6 2.3345 2.2603 -1.1696 9 6 2.2211 1.9195 -2.5992 10 8 1.1815 2.1301 -3.1938 11 7 3.2697 1.3745 -3.2473 12 6 4.5860 1.0649 -2.6536 13 6 5.5708 1.1020 -3.8587 14 1 6.4925 0.5533 -3.6655 15 6 5.8135 2.5735 -4.1966 16 6 6.4981 2.6942 -5.5515 17 6 5.6206 2.1141 -6.6460 18 6 5.1611 0.7081 -6.3528 19 1 4.3353 0.4764 -7.0256 20 7 6.2647 -0.2059 -6.6576 21 6 6.5287 -0.5517 -7.9560 22 1 5.9230 -0.1508 -8.7554 23 6 7.5740 -1.4181 -8.2448 24 7 8.3118 -1.9070 -7.2705 25 14 7.9337 -1.8904 -10.0159 26 1 6.9668 -1.2112 -10.9153 27 1 9.3149 -1.4742 -10.3684 28 1 7.8050 -3.3615 -10.1719 29 6 4.7087 0.4425 -4.9490 30 1 4.7058 -0.6354 -4.7873 31 6 3.2953 0.9802 -4.6682 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3633 -1.0276 -0.0005 35 1 1.8932 -0.5138 -0.8900 36 1 1.8934 -0.5138 0.8900 37 1 3.4591 5.4523 -0.5977 38 1 4.0503 4.4575 -1.9500 39 1 2.3725 5.0518 -1.9495 40 1 4.8581 1.8196 -1.9157 41 1 4.5751 0.0746 -2.1983 42 1 4.8595 3.0997 -4.2257 43 1 6.4472 3.0204 -3.4306 44 1 7.4446 2.1543 -5.5255 45 1 6.6905 3.7457 -5.7646 46 1 6.1815 2.1118 -7.5805 47 1 4.7445 2.7515 -6.7652 48 1 6.8085 -0.5662 -5.9396 49 1 9.0425 -2.5122 -7.4723 50 1 2.5542 0.2027 -4.8534 51 1 3.0948 1.8458 -5.2996 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992905073.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:44:24 Heat of formation + Delta-G solvation = 8.902797 kcal Electronic energy + Delta-G solvation = -32108.808322 eV Core-core repulsion = 28010.347596 eV Total energy + Delta-G solvation = -4098.460726 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -45.95123 -41.75871 -39.84173 -37.08638 -36.36667 -35.15754 -34.65167 -33.24548 -32.46544 -31.88934 -30.85898 -29.03518 -27.98257 -26.73960 -25.80238 -25.06210 -23.92928 -23.12195 -22.38000 -21.22134 -20.48597 -19.46689 -19.13976 -18.89453 -18.44375 -17.59941 -17.17402 -16.76513 -16.52668 -16.12227 -15.61048 -15.47795 -15.32088 -15.25061 -15.03429 -14.84450 -14.30498 -14.23489 -14.12021 -13.92746 -13.74541 -13.73869 -13.49360 -13.27266 -13.13548 -12.84399 -12.67093 -12.62975 -12.59912 -12.52130 -12.43172 -12.14462 -12.01014 -11.89325 -11.78704 -11.42811 -11.21832 -11.21372 -11.00457 -10.89663 -10.69304 -10.41562 -9.79345 -8.92593 -7.89740 -5.15409 0.26248 0.80844 1.22842 1.47967 1.49418 1.57847 1.66337 2.08547 2.58690 2.95657 3.21152 3.33857 3.44103 3.46007 3.67245 3.78369 3.89723 4.07428 4.10500 4.20234 4.20838 4.21073 4.28364 4.34498 4.36003 4.40918 4.51689 4.56433 4.62390 4.66614 4.69335 4.75473 4.81181 4.81849 4.87201 4.88191 4.93308 4.98167 5.07006 5.08113 5.13454 5.15569 5.18526 5.27238 5.43731 5.51406 5.55392 5.68596 5.72897 6.31379 6.34136 6.89941 7.16482 7.40617 8.17045 8.41066 9.33679 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018217 B = 0.002683 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.637893 B =10433.832891 C =10987.758185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.049 4.049 3 C 0.056 3.944 4 N -0.372 5.372 5 O 0.095 5.905 6 C 0.035 3.965 7 C -0.083 4.083 8 C -0.268 4.268 9 C 0.620 3.380 10 O -0.567 6.567 11 N -0.596 5.596 12 C 0.108 3.892 13 C -0.084 4.084 14 H 0.097 0.903 15 C -0.099 4.099 16 C -0.104 4.104 17 C -0.122 4.122 18 C 0.190 3.810 19 H 0.028 0.972 20 N -0.733 5.733 21 C -0.227 4.227 22 H 0.070 0.930 23 C -0.073 4.073 24 N -0.966 5.966 25 Si 0.961 3.039 26 H -0.270 1.270 27 H -0.296 1.296 28 H -0.297 1.297 29 C -0.084 4.084 30 H 0.067 0.933 31 C 0.125 3.875 32 H 0.057 0.943 33 H 0.043 0.957 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.101 0.899 37 H 0.116 0.884 38 H 0.109 0.891 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.077 0.923 42 H 0.066 0.934 43 H 0.083 0.917 44 H 0.040 0.960 45 H 0.068 0.932 46 H 0.039 0.961 47 H 0.058 0.942 48 H 0.374 0.626 49 H 0.248 0.752 50 H 0.065 0.935 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.297 12.228 16.611 23.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.087 4.087 3 C -0.106 4.106 4 N -0.079 5.079 5 O 0.035 5.965 6 C -0.028 4.028 7 C -0.140 4.140 8 C -0.276 4.276 9 C 0.408 3.592 10 O -0.447 6.447 11 N -0.327 5.327 12 C -0.014 4.014 13 C -0.103 4.103 14 H 0.115 0.885 15 C -0.136 4.136 16 C -0.141 4.141 17 C -0.162 4.162 18 C 0.082 3.918 19 H 0.046 0.954 20 N -0.374 5.374 21 C -0.360 4.360 22 H 0.088 0.912 23 C -0.265 4.265 24 N -0.618 5.618 25 Si 0.792 3.208 26 H -0.194 1.194 27 H -0.224 1.224 28 H -0.225 1.225 29 C -0.103 4.103 30 H 0.086 0.914 31 C 0.002 3.998 32 H 0.076 0.924 33 H 0.062 0.938 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.119 0.881 37 H 0.134 0.866 38 H 0.127 0.873 39 H 0.116 0.884 40 H 0.112 0.888 41 H 0.095 0.905 42 H 0.085 0.915 43 H 0.101 0.899 44 H 0.059 0.941 45 H 0.087 0.913 46 H 0.058 0.942 47 H 0.076 0.924 48 H 0.206 0.794 49 H 0.057 0.943 50 H 0.083 0.917 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.010 12.209 17.451 23.975 hybrid contribution 0.526 -1.039 -1.872 2.204 sum -10.484 11.170 15.579 21.850 Atomic orbital electron populations 1.21688 0.93143 1.03508 1.01680 1.20106 0.97117 0.86722 1.04791 1.25033 0.99993 0.99355 0.86258 1.73595 1.17545 0.93059 1.23696 1.84524 1.62617 1.26383 1.23016 1.25167 0.96545 0.97897 0.83218 1.20737 1.03471 0.89852 0.99914 1.21697 1.15005 0.96664 0.94203 1.16546 0.81897 0.76618 0.84157 1.90809 1.29693 1.55493 1.68693 1.48511 1.13218 1.59730 1.11291 1.22739 0.80545 1.01991 0.96124 1.22248 0.97563 0.97636 0.92891 0.88453 1.21322 1.00976 0.94399 0.96888 1.20922 0.98345 1.00089 0.94790 1.21312 0.99211 0.96774 0.98879 1.19141 0.89728 0.89859 0.93091 0.95389 1.42681 1.35816 1.54176 1.04687 1.19552 1.10109 1.20175 0.86114 0.91182 1.25374 0.99306 1.01438 1.00414 1.69795 1.22761 1.37611 1.31599 0.85242 0.77297 0.77160 0.81122 1.19421 1.22365 1.22472 1.21256 0.93495 1.00441 0.95137 0.91427 1.21882 0.96910 0.99819 0.81156 0.92400 0.93817 0.89521 0.89489 0.88071 0.86560 0.87294 0.88373 0.88770 0.90484 0.91537 0.89884 0.94101 0.91324 0.94178 0.92369 0.79387 0.94284 0.91687 0.90919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.89 71.98 0.71 -1.76 16 2 C -0.05 -0.90 6.55 29.85 0.20 -0.70 16 3 C 0.06 1.23 6.84 45.16 0.31 1.54 16 4 N -0.37 -8.47 12.01 -44.79 -0.54 -9.01 16 5 O 0.09 1.89 11.06 76.98 0.85 2.74 16 6 C 0.04 0.63 7.55 25.48 0.19 0.82 16 7 C -0.08 -0.81 10.33 71.24 0.74 -0.08 16 8 C -0.27 -5.97 5.14 -18.75 -0.10 -6.06 16 9 C 0.62 16.10 7.67 86.65 0.66 16.77 16 10 O -0.57 -18.97 17.45 -4.06 -0.07 -19.04 16 11 N -0.60 -13.85 2.89 -813.32 -2.35 -16.20 16 12 C 0.11 2.10 6.02 87.08 0.52 2.62 16 13 C -0.08 -1.96 3.64 -9.62 -0.03 -2.00 16 14 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 15 C -0.10 -2.06 4.90 30.33 0.15 -1.91 16 16 C -0.10 -2.81 5.89 29.96 0.18 -2.64 16 17 C -0.12 -3.93 5.34 29.48 0.16 -3.78 16 18 C 0.19 6.78 2.24 43.27 0.10 6.87 16 19 H 0.03 1.08 7.97 -2.39 -0.02 1.06 16 20 N -0.73 -34.01 4.99 -331.20 -1.65 -35.67 16 21 C -0.23 -12.05 9.42 84.03 0.79 -11.25 16 22 H 0.07 3.64 7.83 -2.91 -0.02 3.62 16 23 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 24 N -0.97 -57.05 13.06 21.65 0.28 -56.77 16 25 Si 0.96 45.36 29.55 68.60 2.03 47.39 16 26 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 27 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 28 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 29 C -0.08 -2.40 2.05 -11.24 -0.02 -2.42 16 30 H 0.07 2.18 8.05 -2.39 -0.02 2.16 16 31 C 0.13 3.27 5.82 86.46 0.50 3.78 16 32 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 33 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.10 1.01 8.14 -2.38 -0.02 0.99 16 40 H 0.09 1.49 7.55 -2.39 -0.02 1.47 16 41 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.07 1.32 7.16 -2.39 -0.02 1.30 16 43 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 46 H 0.04 1.53 7.62 -2.39 -0.02 1.51 16 47 H 0.06 1.63 8.09 -2.39 -0.02 1.61 16 48 H 0.37 18.57 7.73 -92.70 -0.72 17.85 16 49 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 50 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 51 H 0.07 1.93 7.86 -2.39 -0.02 1.91 16 Total: -1.00 -68.35 409.28 4.28 -64.07 By element: Atomic # 1 Polarization: 26.07 SS G_CDS: 0.21 Total: 26.27 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: 5.52 Total: -3.79 kcal Atomic # 7 Polarization: -113.38 SS G_CDS: -4.26 Total: -117.64 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: 0.78 Total: -16.30 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -68.35 4.28 -64.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992905073.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.975 kcal (2) G-P(sol) polarization free energy of solvation -68.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds