Wall clock time and date at job start Wed Apr 1 2020 05:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50698 * 109.47124 * 2 1 4 4 N 1.30018 * 127.33336 * 269.95829 * 3 2 1 5 5 O 1.20660 * 112.29853 * 180.02562 * 4 3 2 6 6 C 1.33500 * 113.15688 * 359.71841 * 5 4 3 7 7 C 1.50695 * 126.82682 * 180.31396 * 6 5 4 8 8 C 1.37356 * 106.33944 * 0.44632 * 6 5 4 9 9 C 1.47400 * 128.56228 * 179.85583 * 8 6 5 10 10 O 1.21615 * 119.99725 * 269.68000 * 9 8 6 11 11 N 1.34777 * 120.00005 * 89.68364 * 9 8 6 12 12 C 1.49454 * 125.72922 * 0.43557 * 11 9 8 13 13 C 1.52331 * 105.48682 * 177.04378 * 12 11 9 14 14 H 1.09001 * 109.88540 * 271.59164 * 13 12 11 15 15 C 1.51436 * 117.45499 * 145.05966 * 13 12 11 16 16 C 1.53843 * 107.04504 * 180.72236 * 15 13 12 17 17 C 1.52523 * 111.65799 * 57.20148 * 16 15 13 18 18 C 1.53818 * 111.70070 * 305.95149 * 17 16 15 19 19 H 1.09002 * 109.93860 * 177.00426 * 18 17 16 20 20 N 1.46496 * 109.94335 * 298.16287 * 18 17 16 21 21 C 1.36942 * 119.99880 * 208.81970 * 20 18 17 22 22 H 1.07999 * 119.99631 * 359.72491 * 21 20 18 23 23 C 1.38805 * 119.99838 * 180.02562 * 21 20 18 24 24 N 1.31622 * 120.00190 * 359.72508 * 23 21 20 25 25 Si 1.86801 * 119.99929 * 179.72345 * 23 21 20 26 26 H 1.48500 * 109.46890 * 90.00019 * 25 23 21 27 27 H 1.48495 * 109.47297 * 209.99854 * 25 23 21 28 28 H 1.48502 * 109.47389 * 330.00059 * 25 23 21 29 29 C 1.51620 * 107.09509 * 57.58706 * 18 17 16 30 30 H 1.08997 * 110.50444 * 55.15106 * 29 18 17 31 31 C 1.48660 * 125.78154 * 179.97438 * 11 9 8 32 32 H 1.09004 * 109.46753 * 179.97438 * 1 2 3 33 33 H 1.08993 * 109.47384 * 300.00116 * 1 2 3 34 34 H 1.09000 * 109.47210 * 60.00351 * 1 2 3 35 35 H 1.09000 * 109.47272 * 240.00241 * 2 1 3 36 36 H 1.08993 * 109.47138 * 120.00320 * 2 1 3 37 37 H 1.09004 * 109.46916 * 270.15983 * 7 6 5 38 38 H 1.08997 * 109.47734 * 30.16374 * 7 6 5 39 39 H 1.09002 * 109.47327 * 150.16916 * 7 6 5 40 40 H 1.08999 * 110.57358 * 57.95391 * 12 11 9 41 41 H 1.09001 * 110.13767 * 295.90419 * 12 11 9 42 42 H 1.09007 * 109.93933 * 61.33716 * 15 13 12 43 43 H 1.09003 * 109.94006 * 300.10519 * 15 13 12 44 44 H 1.08998 * 109.04200 * 296.63707 * 16 15 13 45 45 H 1.09003 * 109.04114 * 177.76289 * 16 15 13 46 46 H 1.09004 * 109.03326 * 185.38765 * 17 16 15 47 47 H 1.09000 * 108.97835 * 66.48493 * 17 16 15 48 48 H 0.96995 * 120.00247 * 28.82514 * 20 18 17 49 49 H 0.97001 * 119.99552 * 180.02562 * 24 23 21 50 50 H 1.08992 * 110.62716 * 37.13072 * 31 11 9 51 51 H 1.09003 * 110.62755 * 274.10679 * 31 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2959 2.1640 -1.0338 5 8 2.6846 3.2625 -0.7208 6 6 2.7413 3.4425 0.6008 7 6 3.1741 4.6914 1.3245 8 6 2.3295 2.2620 1.1696 9 6 2.2091 1.9238 2.5992 10 8 3.1523 1.4328 3.1894 11 7 1.0537 2.1585 3.2522 12 6 -0.1835 2.7456 2.6535 13 6 -1.2196 2.7363 3.7701 14 1 -1.7563 1.7875 3.7700 15 6 -2.2052 3.8851 3.8178 16 6 -3.1171 3.6468 5.0337 17 6 -2.3143 3.5317 6.3254 18 6 -1.2154 2.4607 6.2186 19 1 -0.6268 2.4393 7.1358 20 7 -1.8192 1.1471 5.9819 21 6 -1.1868 0.0140 6.4196 22 1 -0.2409 0.0886 6.9353 23 6 -1.7587 -1.2306 6.1949 24 7 -2.9113 -1.3214 5.5659 25 14 -0.8924 -2.7768 6.7851 26 1 -1.3375 -3.0974 8.1650 27 1 -1.2269 -3.9070 5.8819 28 1 0.5760 -2.5550 6.7776 29 6 -0.3328 2.8431 5.0465 30 1 0.0450 3.8582 5.1683 31 6 0.7915 1.8685 4.6865 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 -0.3633 0.5138 -0.8900 35 1 1.8934 -0.5138 -0.8900 36 1 1.8933 -0.5138 0.8899 37 1 4.2491 4.6549 1.5011 38 1 2.9350 5.5646 0.7175 39 1 2.6514 4.7581 2.2787 40 1 -0.5283 2.1396 1.8157 41 1 0.0067 3.7677 2.3259 42 1 -2.8002 3.9025 2.9046 43 1 -1.6712 4.8284 3.9327 44 1 -3.6796 2.7257 4.8812 45 1 -3.8162 4.4784 5.1223 46 1 -2.9884 3.2691 7.1407 47 1 -1.8522 4.4947 6.5426 48 1 -2.6668 1.0799 5.5152 49 1 -3.3110 -2.1913 5.4092 50 1 1.6790 2.0676 5.2870 51 1 0.4624 0.8375 4.8159 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992905076.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:44:28 Heat of formation + Delta-G solvation = 29.141843 kcal Electronic energy + Delta-G solvation = -32864.048431 eV Core-core repulsion = 28766.465337 eV Total energy + Delta-G solvation = -4097.583095 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.91502 -40.22208 -38.53003 -35.42364 -35.31684 -33.71910 -33.69949 -31.44043 -31.40897 -30.40321 -29.02791 -28.09676 -26.96185 -25.41390 -24.46967 -23.64265 -22.85270 -20.90204 -20.86108 -20.16848 -19.26673 -18.78632 -17.83180 -17.42093 -17.17340 -16.35896 -15.84345 -15.37333 -14.81645 -14.55997 -14.46759 -14.36996 -14.00446 -13.98576 -13.68111 -13.52529 -13.39170 -13.07321 -12.86656 -12.81776 -12.59541 -12.35447 -12.32860 -11.93238 -11.70008 -11.61020 -11.48154 -11.41381 -11.20014 -10.91558 -10.89231 -10.77828 -10.43338 -10.33658 -10.16220 -10.07699 -9.95209 -9.86652 -9.56095 -9.42433 -9.40749 -8.94083 -8.36339 -7.03132 -5.83540 -3.11593 1.24389 1.87712 2.53895 2.78115 3.22310 3.41152 3.48087 3.49212 3.98076 4.17806 4.50735 4.55566 4.76285 4.81821 4.99518 5.01509 5.11903 5.13452 5.18014 5.21198 5.27298 5.33856 5.37758 5.48423 5.52253 5.60147 5.64438 5.66394 5.74668 5.77760 5.81346 5.85730 5.91138 5.93881 5.99440 6.02263 6.06013 6.20006 6.22075 6.30589 6.33171 6.42799 6.58210 6.60489 6.71402 6.81807 6.82262 7.04469 7.65738 7.67845 8.16332 8.26556 8.35241 9.47596 10.03563 10.38472 11.38421 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010302 B = 0.004176 C = 0.003526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2717.255758 B = 6703.247041 C = 7938.454417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.049 4.049 3 C 0.061 3.939 4 N -0.357 5.357 5 O 0.093 5.907 6 C 0.008 3.992 7 C -0.075 4.075 8 C -0.234 4.234 9 C 0.607 3.393 10 O -0.534 6.534 11 N -0.605 5.605 12 C 0.115 3.885 13 C -0.108 4.108 14 H 0.105 0.895 15 C -0.097 4.097 16 C -0.114 4.114 17 C -0.122 4.122 18 C 0.188 3.812 19 H 0.055 0.945 20 N -0.715 5.715 21 C -0.240 4.240 22 H 0.071 0.929 23 C -0.007 4.007 24 N -0.930 5.930 25 Si 0.899 3.101 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.281 1.281 29 C -0.118 4.118 30 H 0.065 0.935 31 C 0.118 3.882 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.056 0.944 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.067 0.933 41 H 0.060 0.940 42 H 0.058 0.942 43 H 0.057 0.943 44 H 0.067 0.933 45 H 0.053 0.947 46 H 0.063 0.937 47 H 0.053 0.947 48 H 0.385 0.615 49 H 0.255 0.745 50 H 0.066 0.934 51 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.942 13.847 -8.984 17.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.087 4.087 3 C -0.101 4.101 4 N -0.063 5.063 5 O 0.032 5.968 6 C -0.056 4.056 7 C -0.133 4.133 8 C -0.241 4.241 9 C 0.393 3.607 10 O -0.411 6.411 11 N -0.338 5.338 12 C -0.007 4.007 13 C -0.127 4.127 14 H 0.123 0.877 15 C -0.135 4.135 16 C -0.152 4.152 17 C -0.160 4.160 18 C 0.077 3.923 19 H 0.073 0.927 20 N -0.357 5.357 21 C -0.371 4.371 22 H 0.089 0.911 23 C -0.204 4.204 24 N -0.578 5.578 25 Si 0.730 3.270 26 H -0.217 1.217 27 H -0.219 1.219 28 H -0.206 1.206 29 C -0.140 4.140 30 H 0.084 0.916 31 C -0.002 4.002 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.104 0.896 36 H 0.108 0.892 37 H 0.112 0.888 38 H 0.108 0.892 39 H 0.110 0.890 40 H 0.085 0.915 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.086 0.914 45 H 0.071 0.929 46 H 0.082 0.918 47 H 0.072 0.928 48 H 0.220 0.780 49 H 0.065 0.935 50 H 0.085 0.915 51 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 5.552 13.253 -9.933 17.468 hybrid contribution 0.156 -1.063 0.784 1.331 sum 5.708 12.190 -9.149 16.275 Atomic orbital electron populations 1.21781 0.93161 1.03105 1.02532 1.20030 0.97012 0.87409 1.04252 1.24769 1.00097 0.98782 0.86444 1.73583 1.16827 0.92591 1.23334 1.84506 1.63013 1.26754 1.22550 1.24531 0.99789 0.97469 0.83762 1.20417 1.03085 0.90577 0.99185 1.21968 1.11767 0.94937 0.95464 1.16453 0.81988 0.78628 0.83616 1.90822 1.38124 1.44307 1.67877 1.49461 1.11163 1.60911 1.12219 1.21974 0.84589 0.97377 0.96732 1.21900 0.95538 1.01638 0.93654 0.87651 1.21248 0.97053 0.97070 0.98130 1.21457 0.97730 1.01652 0.94339 1.21811 0.98385 0.98422 0.97403 1.19910 0.91871 0.86312 0.94231 0.92680 1.42448 1.25249 0.99561 1.68431 1.19210 1.02900 0.84814 1.30178 0.91108 1.24673 0.97136 0.97441 1.01108 1.69644 1.18035 1.23555 1.46520 0.86311 0.79071 0.83571 0.78044 1.21735 1.21853 1.20611 1.22862 0.95259 0.97635 0.98266 0.91636 1.22266 0.97418 1.02299 0.78237 0.91072 0.91715 0.92457 0.89650 0.89192 0.88818 0.89233 0.88963 0.91475 0.92203 0.92318 0.92417 0.91382 0.92854 0.91826 0.92846 0.77986 0.93525 0.91525 0.87651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.89 37.16 0.37 -1.47 16 2 C -0.05 -0.64 6.55 -27.88 -0.18 -0.82 16 3 C 0.06 0.89 6.84 -79.77 -0.55 0.34 16 4 N -0.36 -5.13 12.01 34.78 0.42 -4.71 16 5 O 0.09 1.21 11.06 18.63 0.21 1.41 16 6 C 0.01 0.10 7.55 -34.63 -0.26 -0.17 16 7 C -0.08 -0.61 10.33 36.00 0.37 -0.24 16 8 C -0.23 -3.47 5.44 -102.89 -0.56 -4.03 16 9 C 0.61 10.44 7.65 -12.53 -0.10 10.34 16 10 O -0.53 -11.07 17.40 5.26 0.09 -10.98 16 11 N -0.60 -9.77 3.41 -171.10 -0.58 -10.35 16 12 C 0.12 1.59 6.31 -2.74 -0.02 1.58 16 13 C -0.11 -1.58 2.21 -90.26 -0.20 -1.78 16 14 H 0.11 1.92 6.54 -51.93 -0.34 1.58 16 15 C -0.10 -1.19 5.71 -27.08 -0.15 -1.34 16 16 C -0.11 -1.52 5.57 -26.54 -0.15 -1.67 16 17 C -0.12 -1.75 5.51 -26.55 -0.15 -1.89 16 18 C 0.19 3.24 3.00 -68.21 -0.20 3.03 16 19 H 0.06 0.99 8.06 -51.93 -0.42 0.57 16 20 N -0.72 -15.53 3.83 -53.69 -0.21 -15.74 16 21 C -0.24 -6.02 8.09 -15.06 -0.12 -6.14 16 22 H 0.07 1.77 7.83 -52.49 -0.41 1.35 16 23 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 24 N -0.93 -26.19 13.06 55.49 0.72 -25.47 16 25 Si 0.90 21.72 29.55 -169.99 -5.02 16.69 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 27 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 28 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 29 C -0.12 -1.82 2.37 -89.79 -0.21 -2.03 16 30 H 0.07 0.91 8.02 -51.93 -0.42 0.49 16 31 C 0.12 2.09 6.44 -2.81 -0.02 2.07 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.89 6.17 -51.93 -0.32 0.57 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 37 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.09 0.77 8.11 -51.93 -0.42 0.35 16 40 H 0.07 0.94 6.17 -51.93 -0.32 0.62 16 41 H 0.06 0.71 8.08 -51.93 -0.42 0.29 16 42 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 43 H 0.06 0.63 8.04 -51.93 -0.42 0.21 16 44 H 0.07 1.06 7.03 -51.93 -0.36 0.69 16 45 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 46 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 47 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.39 8.97 5.96 -40.82 -0.24 8.73 16 49 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 50 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 51 H 0.11 2.26 6.14 -51.93 -0.32 1.94 16 LS Contribution 400.55 15.07 6.04 6.04 Total: -1.00 -30.10 400.55 -8.75 -38.85 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: -8.19 Total: 8.76 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: -2.23 Total: -4.50 kcal Atomic # 7 Polarization: -56.63 SS G_CDS: 0.35 Total: -56.27 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.30 Total: -9.57 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -30.10 -8.75 -38.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992905076.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.991 kcal (2) G-P(sol) polarization free energy of solvation -30.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds