Wall clock time and date at job start Wed Apr 1 2020 05:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50698 * 109.47124 * 2 1 4 4 N 1.30018 * 127.33336 * 269.95829 * 3 2 1 5 5 O 1.20660 * 112.29853 * 180.02562 * 4 3 2 6 6 C 1.33500 * 113.15688 * 359.71841 * 5 4 3 7 7 C 1.50695 * 126.82682 * 180.31396 * 6 5 4 8 8 C 1.37356 * 106.33944 * 0.44632 * 6 5 4 9 9 C 1.47400 * 128.56228 * 179.85583 * 8 6 5 10 10 O 1.21615 * 119.99725 * 269.68000 * 9 8 6 11 11 N 1.34777 * 120.00005 * 89.68364 * 9 8 6 12 12 C 1.49454 * 125.72922 * 0.43557 * 11 9 8 13 13 C 1.52331 * 105.48682 * 177.04378 * 12 11 9 14 14 H 1.09001 * 109.88540 * 271.59164 * 13 12 11 15 15 C 1.51436 * 117.45499 * 145.05966 * 13 12 11 16 16 C 1.53843 * 107.04504 * 180.72236 * 15 13 12 17 17 C 1.52523 * 111.65799 * 57.20148 * 16 15 13 18 18 C 1.53818 * 111.70070 * 305.95149 * 17 16 15 19 19 H 1.09002 * 109.93860 * 177.00426 * 18 17 16 20 20 N 1.46496 * 109.94335 * 298.16287 * 18 17 16 21 21 C 1.36942 * 119.99880 * 208.81970 * 20 18 17 22 22 H 1.07999 * 119.99631 * 359.72491 * 21 20 18 23 23 C 1.38805 * 119.99838 * 180.02562 * 21 20 18 24 24 N 1.31622 * 120.00190 * 359.72508 * 23 21 20 25 25 Si 1.86801 * 119.99929 * 179.72345 * 23 21 20 26 26 H 1.48500 * 109.46890 * 90.00019 * 25 23 21 27 27 H 1.48495 * 109.47297 * 209.99854 * 25 23 21 28 28 H 1.48502 * 109.47389 * 330.00059 * 25 23 21 29 29 C 1.51620 * 107.09509 * 57.58706 * 18 17 16 30 30 H 1.08997 * 110.50444 * 55.15106 * 29 18 17 31 31 C 1.48660 * 125.78154 * 179.97438 * 11 9 8 32 32 H 1.09004 * 109.46753 * 179.97438 * 1 2 3 33 33 H 1.08993 * 109.47384 * 300.00116 * 1 2 3 34 34 H 1.09000 * 109.47210 * 60.00351 * 1 2 3 35 35 H 1.09000 * 109.47272 * 240.00241 * 2 1 3 36 36 H 1.08993 * 109.47138 * 120.00320 * 2 1 3 37 37 H 1.09004 * 109.46916 * 270.15983 * 7 6 5 38 38 H 1.08997 * 109.47734 * 30.16374 * 7 6 5 39 39 H 1.09002 * 109.47327 * 150.16916 * 7 6 5 40 40 H 1.08999 * 110.57358 * 57.95391 * 12 11 9 41 41 H 1.09001 * 110.13767 * 295.90419 * 12 11 9 42 42 H 1.09007 * 109.93933 * 61.33716 * 15 13 12 43 43 H 1.09003 * 109.94006 * 300.10519 * 15 13 12 44 44 H 1.08998 * 109.04200 * 296.63707 * 16 15 13 45 45 H 1.09003 * 109.04114 * 177.76289 * 16 15 13 46 46 H 1.09004 * 109.03326 * 185.38765 * 17 16 15 47 47 H 1.09000 * 108.97835 * 66.48493 * 17 16 15 48 48 H 0.96995 * 120.00247 * 28.82514 * 20 18 17 49 49 H 0.97001 * 119.99552 * 180.02562 * 24 23 21 50 50 H 1.08992 * 110.62716 * 37.13072 * 31 11 9 51 51 H 1.09003 * 110.62755 * 274.10679 * 31 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2959 2.1640 -1.0338 5 8 2.6846 3.2625 -0.7208 6 6 2.7413 3.4425 0.6008 7 6 3.1741 4.6914 1.3245 8 6 2.3295 2.2620 1.1696 9 6 2.2091 1.9238 2.5992 10 8 3.1523 1.4328 3.1894 11 7 1.0537 2.1585 3.2522 12 6 -0.1835 2.7456 2.6535 13 6 -1.2196 2.7363 3.7701 14 1 -1.7563 1.7875 3.7700 15 6 -2.2052 3.8851 3.8178 16 6 -3.1171 3.6468 5.0337 17 6 -2.3143 3.5317 6.3254 18 6 -1.2154 2.4607 6.2186 19 1 -0.6268 2.4393 7.1358 20 7 -1.8192 1.1471 5.9819 21 6 -1.1868 0.0140 6.4196 22 1 -0.2409 0.0886 6.9353 23 6 -1.7587 -1.2306 6.1949 24 7 -2.9113 -1.3214 5.5659 25 14 -0.8924 -2.7768 6.7851 26 1 -1.3375 -3.0974 8.1650 27 1 -1.2269 -3.9070 5.8819 28 1 0.5760 -2.5550 6.7776 29 6 -0.3328 2.8431 5.0465 30 1 0.0450 3.8582 5.1683 31 6 0.7915 1.8685 4.6865 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 -0.3633 0.5138 -0.8900 35 1 1.8934 -0.5138 -0.8900 36 1 1.8933 -0.5138 0.8899 37 1 4.2491 4.6549 1.5011 38 1 2.9350 5.5646 0.7175 39 1 2.6514 4.7581 2.2787 40 1 -0.5283 2.1396 1.8157 41 1 0.0067 3.7677 2.3259 42 1 -2.8002 3.9025 2.9046 43 1 -1.6712 4.8284 3.9327 44 1 -3.6796 2.7257 4.8812 45 1 -3.8162 4.4784 5.1223 46 1 -2.9884 3.2691 7.1407 47 1 -1.8522 4.4947 6.5426 48 1 -2.6668 1.0799 5.5152 49 1 -3.3110 -2.1913 5.4092 50 1 1.6790 2.0676 5.2870 51 1 0.4624 0.8375 4.8159 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992905076.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:44:27 Heat of formation + Delta-G solvation = 12.273789 kcal Electronic energy + Delta-G solvation = -32864.779885 eV Core-core repulsion = 28766.465337 eV Total energy + Delta-G solvation = -4098.314549 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -45.98146 -41.53019 -39.88642 -36.82180 -36.41046 -35.34123 -34.67421 -33.07152 -32.47548 -31.62858 -30.60857 -28.99837 -28.26477 -26.61193 -25.76316 -25.21687 -24.12408 -22.13874 -22.04662 -21.28182 -20.44129 -20.12113 -19.10910 -18.90731 -18.56972 -17.55679 -17.15068 -16.67502 -16.44210 -15.85320 -15.68530 -15.55899 -15.47237 -15.20125 -15.08209 -14.53184 -14.36567 -14.16013 -14.13961 -13.80590 -13.78331 -13.60389 -13.47807 -13.22623 -13.12902 -12.85584 -12.76019 -12.64849 -12.60241 -12.53121 -12.38813 -12.13615 -11.95084 -11.79673 -11.60011 -11.38444 -11.32071 -11.10394 -11.02555 -10.86600 -10.57033 -10.43708 -9.74693 -8.91161 -7.90223 -5.13418 0.25032 0.76417 1.23300 1.43695 1.46579 1.51998 1.69152 2.07982 2.57207 2.89996 3.18505 3.33843 3.43933 3.62016 3.80054 3.87218 3.90635 4.01806 4.10434 4.15552 4.18332 4.29820 4.33389 4.39496 4.41403 4.48839 4.57296 4.63957 4.66144 4.67294 4.72981 4.73867 4.76274 4.82489 4.83693 4.94004 4.97320 5.06024 5.09970 5.11757 5.14249 5.20594 5.27790 5.42221 5.46025 5.52693 5.58259 5.61164 5.77608 6.33400 6.37534 6.92209 7.13440 7.41761 8.19960 8.42392 9.32731 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010302 B = 0.004176 C = 0.003526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2717.255758 B = 6703.247041 C = 7938.454417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.049 4.049 3 C 0.053 3.947 4 N -0.368 5.368 5 O 0.100 5.900 6 C 0.036 3.964 7 C -0.078 4.078 8 C -0.268 4.268 9 C 0.611 3.389 10 O -0.580 6.580 11 N -0.601 5.601 12 C 0.119 3.881 13 C -0.099 4.099 14 H 0.061 0.939 15 C -0.088 4.088 16 C -0.112 4.112 17 C -0.114 4.114 18 C 0.179 3.821 19 H 0.046 0.954 20 N -0.721 5.721 21 C -0.218 4.218 22 H 0.068 0.932 23 C -0.065 4.065 24 N -0.962 5.962 25 Si 0.946 3.054 26 H -0.289 1.289 27 H -0.301 1.301 28 H -0.280 1.280 29 C -0.107 4.107 30 H 0.100 0.900 31 C 0.119 3.881 32 H 0.076 0.924 33 H 0.046 0.954 34 H 0.068 0.932 35 H 0.101 0.899 36 H 0.071 0.929 37 H 0.107 0.893 38 H 0.123 0.877 39 H 0.094 0.906 40 H 0.063 0.937 41 H 0.095 0.905 42 H 0.072 0.928 43 H 0.088 0.912 44 H 0.035 0.965 45 H 0.080 0.920 46 H 0.050 0.950 47 H 0.087 0.913 48 H 0.377 0.623 49 H 0.247 0.753 50 H 0.061 0.939 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.405 17.664 -10.011 21.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.088 4.088 3 C -0.109 4.109 4 N -0.074 5.074 5 O 0.039 5.961 6 C -0.028 4.028 7 C -0.134 4.134 8 C -0.275 4.275 9 C 0.399 3.601 10 O -0.460 6.460 11 N -0.333 5.333 12 C -0.002 4.002 13 C -0.118 4.118 14 H 0.080 0.920 15 C -0.126 4.126 16 C -0.150 4.150 17 C -0.152 4.152 18 C 0.069 3.931 19 H 0.064 0.936 20 N -0.361 5.361 21 C -0.350 4.350 22 H 0.086 0.914 23 C -0.258 4.258 24 N -0.613 5.613 25 Si 0.778 3.222 26 H -0.216 1.216 27 H -0.228 1.228 28 H -0.206 1.206 29 C -0.128 4.128 30 H 0.118 0.882 31 C -0.002 4.002 32 H 0.095 0.905 33 H 0.065 0.935 34 H 0.087 0.913 35 H 0.120 0.880 36 H 0.090 0.910 37 H 0.125 0.875 38 H 0.142 0.858 39 H 0.113 0.887 40 H 0.081 0.919 41 H 0.113 0.887 42 H 0.091 0.909 43 H 0.107 0.893 44 H 0.054 0.946 45 H 0.099 0.901 46 H 0.069 0.931 47 H 0.106 0.894 48 H 0.210 0.790 49 H 0.056 0.944 50 H 0.079 0.921 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.018 17.121 -10.959 21.200 hybrid contribution 0.091 -2.159 1.118 2.433 sum 6.109 14.962 -9.841 18.921 Atomic orbital electron populations 1.21719 0.92704 1.03368 1.02111 1.20039 0.97361 0.87227 1.04125 1.24905 1.00288 0.99170 0.86549 1.73571 1.17421 0.93066 1.23329 1.84498 1.62519 1.26160 1.22907 1.25190 0.96711 0.97712 0.83154 1.20711 1.03779 0.89672 0.99281 1.21755 1.15052 0.96661 0.94075 1.16721 0.81431 0.77592 0.84404 1.90786 1.39750 1.46355 1.69150 1.49486 1.11774 1.60426 1.11604 1.22092 0.83116 0.98922 0.96106 1.21776 0.95689 1.00973 0.93354 0.92025 1.21239 0.96319 0.96852 0.98153 1.21442 0.98055 1.01203 0.94264 1.21731 0.97248 0.98512 0.97729 1.20188 0.93137 0.85238 0.94517 0.93568 1.42553 1.24874 1.00617 1.68076 1.19440 1.02088 0.85940 1.27569 0.91363 1.25188 0.98133 0.99596 1.02892 1.69757 1.19450 1.23162 1.48964 0.85535 0.78154 0.81168 0.77364 1.21602 1.22771 1.20604 1.22702 0.94128 0.98304 0.97692 0.88217 1.22017 0.98036 1.00545 0.79606 0.90536 0.93541 0.91277 0.88025 0.91022 0.87504 0.85835 0.88714 0.91886 0.88703 0.90899 0.89334 0.94563 0.90111 0.93139 0.89413 0.78969 0.94419 0.92060 0.92225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.54 9.89 71.98 0.71 -2.83 16 2 C -0.05 -1.31 6.55 29.85 0.20 -1.12 16 3 C 0.05 1.50 6.84 45.15 0.31 1.81 16 4 N -0.37 -9.97 12.01 -44.78 -0.54 -10.51 16 5 O 0.10 2.34 11.06 76.92 0.85 3.19 16 6 C 0.04 0.78 7.55 25.48 0.19 0.97 16 7 C -0.08 -0.94 10.33 71.23 0.74 -0.20 16 8 C -0.27 -7.66 5.44 -18.75 -0.10 -7.77 16 9 C 0.61 21.02 7.65 86.66 0.66 21.68 16 10 O -0.58 -24.68 17.40 -4.08 -0.07 -24.75 16 11 N -0.60 -19.21 3.41 -813.49 -2.77 -21.99 16 12 C 0.12 3.06 6.31 85.58 0.54 3.60 16 13 C -0.10 -2.73 2.21 -10.56 -0.02 -2.75 16 14 H 0.06 2.30 6.54 -2.39 -0.02 2.28 16 15 C -0.09 -1.81 5.71 30.37 0.17 -1.64 16 16 C -0.11 -2.68 5.57 30.72 0.17 -2.51 16 17 C -0.11 -2.99 5.51 30.71 0.17 -2.82 16 18 C 0.18 6.01 3.00 44.82 0.13 6.15 16 19 H 0.05 1.64 8.06 -2.39 -0.02 1.62 16 20 N -0.72 -32.17 3.83 -323.79 -1.24 -33.41 16 21 C -0.22 -11.32 8.09 84.03 0.68 -10.64 16 22 H 0.07 3.52 7.83 -2.91 -0.02 3.50 16 23 C -0.07 -3.63 5.50 84.86 0.47 -3.16 16 24 N -0.96 -56.53 13.06 21.65 0.28 -56.24 16 25 Si 0.95 46.38 29.55 68.60 2.03 48.41 16 26 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 27 H -0.30 -15.03 7.11 99.48 0.71 -14.33 16 28 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 29 C -0.11 -3.11 2.37 -10.25 -0.02 -3.14 16 30 H 0.10 2.33 8.02 -2.39 -0.02 2.31 16 31 C 0.12 4.28 6.44 85.99 0.55 4.83 16 32 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.05 1.32 6.17 -2.39 -0.01 1.30 16 34 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 36 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.09 1.18 8.11 -2.39 -0.02 1.16 16 40 H 0.06 1.71 6.17 -2.39 -0.01 1.70 16 41 H 0.09 1.84 8.08 -2.39 -0.02 1.82 16 42 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 43 H 0.09 1.37 8.04 -2.39 -0.02 1.35 16 44 H 0.04 1.10 7.03 -2.39 -0.02 1.09 16 45 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 46 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 47 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 48 H 0.38 18.23 5.96 -92.71 -0.55 17.68 16 49 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 50 H 0.06 2.22 8.07 -2.39 -0.02 2.21 16 51 H 0.06 2.69 6.14 -2.39 -0.01 2.68 16 Total: -1.00 -69.82 400.55 4.47 -65.34 By element: Atomic # 1 Polarization: 29.10 SS G_CDS: 0.39 Total: 29.49 kcal Atomic # 6 Polarization: -5.08 SS G_CDS: 5.55 Total: 0.47 kcal Atomic # 7 Polarization: -117.88 SS G_CDS: -4.27 Total: -122.15 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: 0.78 Total: -21.56 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Total: -69.82 4.47 -65.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992905076.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.617 kcal (2) G-P(sol) polarization free energy of solvation -69.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds