Wall clock time and date at job start Wed Apr 1 2020 04:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50701 * 109.47353 * 2 1 4 4 C 1.38353 * 120.27537 * 89.99953 * 3 2 1 5 5 N 1.31876 * 121.18643 * 179.97438 * 4 3 2 6 6 C 1.32233 * 121.80504 * 0.02562 * 5 4 3 7 7 O 1.35425 * 119.80501 * 180.02562 * 6 5 4 8 8 C 1.40281 * 120.39536 * 0.02562 * 6 5 4 9 9 C 1.47532 * 120.59262 * 179.97438 * 8 6 5 10 10 O 1.21583 * 120.00542 * 0.02562 * 9 8 6 11 11 N 1.34779 * 119.99849 * 179.97438 * 9 8 6 12 12 C 1.46494 * 120.00241 * 179.97438 * 11 9 8 13 13 H 1.09001 * 109.47007 * 325.00160 * 12 11 9 14 14 C 1.53004 * 109.46999 * 85.00135 * 12 11 9 15 15 C 1.52999 * 109.47427 * 205.00369 * 12 11 9 16 16 C 1.53036 * 109.46312 * 180.02562 * 15 12 11 17 17 C 1.53189 * 109.31608 * 181.38684 * 16 15 12 18 18 N 1.46924 * 108.77173 * 305.36115 * 17 16 15 19 19 C 1.36937 * 120.63200 * 233.58519 * 18 17 16 20 20 H 1.07998 * 120.00002 * 27.81172 * 19 18 17 21 21 C 1.38816 * 120.00353 * 207.80515 * 19 18 17 22 22 N 1.31623 * 119.99605 * 25.85418 * 21 19 18 23 23 Si 1.86798 * 120.00303 * 205.57558 * 21 19 18 24 24 H 1.48496 * 109.47254 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.46775 * 120.00140 * 23 21 19 26 26 H 1.48502 * 109.47217 * 239.99955 * 23 21 19 27 27 C 1.46921 * 118.74129 * 53.86338 * 18 17 16 28 28 C 1.53045 * 109.45810 * 300.06808 * 15 12 11 29 29 C 1.38347 * 120.26722 * 270.30006 * 3 2 1 30 30 H 1.08995 * 109.47286 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47413 * 300.00314 * 1 2 3 32 32 H 1.09005 * 109.47190 * 60.00239 * 1 2 3 33 33 H 1.09005 * 109.47413 * 239.99686 * 2 1 3 34 34 H 1.09005 * 109.47190 * 119.99761 * 2 1 3 35 35 H 1.08000 * 119.40161 * 359.97438 * 4 3 2 36 36 H 0.96701 * 114.00266 * 270.02677 * 7 6 5 37 37 H 0.97006 * 119.99686 * 0.02562 * 11 9 8 38 38 H 1.08997 * 109.47117 * 180.02562 * 14 12 11 39 39 H 1.08994 * 109.47010 * 300.00015 * 14 12 11 40 40 H 1.09000 * 109.46745 * 60.00378 * 14 12 11 41 41 H 1.08999 * 109.45200 * 60.03091 * 15 12 11 42 42 H 1.09001 * 109.49887 * 61.43314 * 16 15 12 43 43 H 1.09006 * 109.49636 * 301.33768 * 16 15 12 44 44 H 1.09005 * 109.58901 * 185.57907 * 17 16 15 45 45 H 1.08993 * 109.58830 * 65.15058 * 17 16 15 46 46 H 0.96999 * 119.99925 * 4.04910 * 22 21 19 47 47 H 1.08995 * 109.59060 * 65.92401 * 27 18 17 48 48 H 1.08997 * 109.59199 * 186.35374 * 27 18 17 49 49 H 1.08999 * 109.49721 * 298.56498 * 28 15 12 50 50 H 1.08996 * 109.49889 * 58.66112 * 28 15 12 51 51 H 1.08002 * 120.82519 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2649 2.0784 1.1948 5 7 2.7049 3.3214 1.2158 6 6 2.9432 3.9952 0.1033 7 8 3.3951 5.2700 0.1720 8 6 2.7307 3.3974 -1.1479 9 6 2.9946 4.1453 -2.3919 10 8 3.4004 5.2902 -2.3386 11 7 2.7868 3.5591 -3.5876 12 6 3.0483 4.3019 -4.8229 13 1 2.7940 5.3516 -4.6764 14 6 4.5297 4.1818 -5.1863 15 6 2.1969 3.7242 -5.9553 16 6 2.4708 4.4999 -7.2458 17 6 1.5914 3.9414 -8.3690 18 7 1.8217 2.4942 -8.4745 19 6 2.1667 1.9281 -9.6727 20 1 2.6976 2.5098 -10.4118 21 6 1.8343 0.6066 -9.9375 22 7 0.8035 0.0538 -9.3340 23 14 2.8452 -0.3847 -11.1560 24 1 3.9380 0.4624 -11.6975 25 1 3.4284 -1.5656 -10.4701 26 1 1.9730 -0.8393 -12.2687 27 6 1.6686 1.6649 -7.2715 28 6 2.5530 2.2498 -6.1597 29 6 2.2589 2.0803 -1.1949 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.0827 1.5645 2.1271 36 1 2.6937 5.9354 0.1928 37 1 2.4634 2.6455 -3.6302 38 1 4.7243 4.7349 -6.1052 39 1 5.1361 4.5934 -4.3796 40 1 4.7839 3.1321 -5.3328 41 1 1.1417 3.8104 -5.6964 42 1 3.5207 4.3932 -7.5186 43 1 2.2394 5.5540 -7.0927 44 1 1.8529 4.4227 -9.3115 45 1 0.5425 4.1288 -8.1393 46 1 0.2411 0.5858 -8.7495 47 1 0.6259 1.6703 -6.9541 48 1 1.9811 0.6436 -7.4893 49 1 3.6021 2.1648 -6.4429 50 1 2.3802 1.7020 -5.2333 51 1 2.0806 1.5896 -2.1403 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997809989.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:50 Heat of formation + Delta-G solvation = -35.628819 kcal Electronic energy + Delta-G solvation = -31234.747562 eV Core-core repulsion = 27134.355801 eV Total energy + Delta-G solvation = -4100.391762 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.22819 -39.67395 -38.17255 -37.55018 -35.48161 -34.62748 -33.50001 -32.50235 -30.77886 -30.17450 -29.46905 -28.66053 -25.60597 -25.02243 -24.40320 -23.50008 -22.67128 -22.10282 -20.74711 -20.32642 -19.16124 -18.77671 -17.72818 -17.53182 -17.23977 -16.35526 -15.80344 -15.16994 -14.90396 -14.75581 -14.44605 -14.44271 -14.34466 -14.11413 -13.93002 -13.58158 -13.52735 -13.34213 -13.07309 -12.83293 -12.77471 -12.56232 -12.20910 -12.11348 -11.85832 -11.76249 -11.60401 -11.43440 -11.23020 -10.93728 -10.69823 -10.42688 -10.34123 -10.26604 -10.24466 -10.11226 -9.97171 -9.76246 -9.62013 -9.30823 -9.21059 -9.01833 -8.38575 -6.90907 -6.12619 -3.25520 0.23789 0.68994 2.63829 2.96076 3.21811 3.48321 3.49857 3.50274 3.64326 4.12299 4.24981 4.34642 4.41566 4.55943 4.70766 4.87213 4.91141 4.92346 5.03615 5.07396 5.16433 5.25709 5.28001 5.35894 5.43441 5.44785 5.53746 5.54978 5.60870 5.74660 5.79969 5.81668 5.90131 5.95085 6.00723 6.05957 6.12750 6.20463 6.30852 6.35162 6.49407 6.53629 6.57094 6.69117 6.79551 7.01320 7.13477 7.21188 7.39054 7.49919 7.98985 8.09108 8.54409 9.08559 9.81774 10.26565 11.17631 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012701 B = 0.002685 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.061567 B =10424.621245 C =12019.730378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.080 4.080 3 C -0.151 4.151 4 C 0.149 3.851 5 N -0.505 5.505 6 C 0.363 3.637 7 O -0.460 6.460 8 C -0.198 4.198 9 C 0.561 3.439 10 O -0.522 6.522 11 N -0.717 5.717 12 C 0.148 3.852 13 H 0.085 0.915 14 C -0.163 4.163 15 C -0.086 4.086 16 C -0.126 4.126 17 C 0.147 3.853 18 N -0.599 5.599 19 C -0.349 4.349 20 H 0.056 0.944 21 C -0.025 4.025 22 N -0.917 5.917 23 Si 1.068 2.932 24 H -0.292 1.292 25 H -0.290 1.290 26 H -0.294 1.294 27 C 0.152 3.848 28 C -0.131 4.131 29 C -0.028 4.028 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.164 0.836 36 H 0.404 0.596 37 H 0.398 0.602 38 H 0.070 0.930 39 H 0.053 0.947 40 H 0.061 0.939 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.053 0.947 44 H 0.056 0.944 45 H 0.014 0.986 46 H 0.269 0.731 47 H 0.015 0.985 48 H 0.079 0.921 49 H 0.066 0.934 50 H 0.042 0.958 51 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.579 2.843 20.243 20.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.118 4.118 3 C -0.153 4.153 4 C -0.009 4.009 5 N -0.223 5.223 6 C 0.183 3.817 7 O -0.267 6.267 8 C -0.205 4.205 9 C 0.346 3.654 10 O -0.399 6.399 11 N -0.369 5.369 12 C 0.044 3.956 13 H 0.103 0.897 14 C -0.222 4.222 15 C -0.105 4.105 16 C -0.165 4.165 17 C 0.021 3.979 18 N -0.323 5.323 19 C -0.478 4.478 20 H 0.074 0.926 21 C -0.227 4.227 22 N -0.558 5.558 23 Si 0.899 3.101 24 H -0.218 1.218 25 H -0.217 1.217 26 H -0.221 1.221 27 C 0.025 3.975 28 C -0.171 4.171 29 C -0.054 4.054 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.181 0.819 36 H 0.264 0.736 37 H 0.234 0.766 38 H 0.089 0.911 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.071 0.929 44 H 0.074 0.926 45 H 0.032 0.968 46 H 0.080 0.920 47 H 0.033 0.967 48 H 0.097 0.903 49 H 0.085 0.915 50 H 0.060 0.940 51 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 1.785 2.420 20.286 20.508 hybrid contribution -0.914 0.933 -0.077 1.309 sum 0.871 3.353 20.209 20.504 Atomic orbital electron populations 1.21789 0.94193 1.02378 1.02391 1.20502 0.96518 0.90949 1.03840 1.20892 1.02320 0.98540 0.93558 1.22656 0.91598 0.88765 0.97908 1.67337 1.13753 1.09845 1.31399 1.19170 0.89100 0.87154 0.86286 1.84720 1.35061 1.11627 1.95311 1.21202 1.07578 0.96761 0.94977 1.17815 0.78221 0.86344 0.82976 1.90804 1.44821 1.17204 1.87049 1.46146 1.67552 1.17743 1.05493 1.21113 0.95618 0.96355 0.82491 0.89710 1.22235 0.95510 1.02651 1.01757 1.21318 0.98686 0.96593 0.93880 1.22063 1.01690 0.97593 0.95185 1.20887 0.95026 0.86123 0.95851 1.44126 1.81301 1.01449 1.05378 1.20017 1.34214 0.98721 0.94829 0.92606 1.25832 0.97792 0.96712 1.02359 1.70742 1.12630 1.40883 1.31500 0.83477 0.75398 0.75667 0.75603 1.21826 1.21702 1.22117 1.21007 0.94797 0.96249 0.85403 1.22260 1.01939 0.94154 0.98701 1.21685 0.92407 0.92174 0.99116 0.91802 0.92487 0.92303 0.90200 0.90271 0.81877 0.73593 0.76586 0.91084 0.92756 0.91970 0.91441 0.91539 0.92852 0.92580 0.96790 0.92046 0.96732 0.90292 0.91518 0.93967 0.83960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.89 37.15 0.37 -0.45 16 2 C -0.08 -0.44 6.08 -27.89 -0.17 -0.61 16 3 C -0.15 -1.16 5.14 -104.54 -0.54 -1.70 16 4 C 0.15 1.24 10.84 -17.49 -0.19 1.05 16 5 N -0.51 -5.70 10.37 -12.98 -0.13 -5.83 16 6 C 0.36 4.43 7.77 -16.61 -0.13 4.30 16 7 O -0.46 -5.71 11.66 -39.74 -0.46 -6.17 16 8 C -0.20 -2.30 5.90 -104.69 -0.62 -2.92 16 9 C 0.56 7.55 7.74 -12.47 -0.10 7.46 16 10 O -0.52 -8.55 14.86 -16.48 -0.24 -8.79 16 11 N -0.72 -8.79 4.95 -54.85 -0.27 -9.06 16 12 C 0.15 2.00 2.40 -67.93 -0.16 1.84 16 13 H 0.08 1.22 7.58 -51.93 -0.39 0.83 16 14 C -0.16 -2.22 8.78 37.16 0.33 -1.89 16 15 C -0.09 -1.28 2.14 -90.58 -0.19 -1.47 16 16 C -0.13 -2.04 4.96 -26.61 -0.13 -2.17 16 17 C 0.15 2.97 6.51 -3.71 -0.02 2.95 16 18 N -0.60 -14.32 2.85 -172.06 -0.49 -14.81 16 19 C -0.35 -9.46 9.49 -15.06 -0.14 -9.61 16 20 H 0.06 1.54 7.95 -52.49 -0.42 1.12 16 21 C -0.03 -0.69 4.66 -17.43 -0.08 -0.77 16 22 N -0.92 -26.68 12.46 55.49 0.69 -25.99 16 23 Si 1.07 24.80 29.99 -169.99 -5.10 19.70 16 24 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 26 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 27 C 0.15 3.29 4.72 -3.48 -0.02 3.28 16 28 C -0.13 -2.18 4.83 -26.38 -0.13 -2.30 16 29 C -0.03 -0.25 9.31 -38.89 -0.36 -0.61 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.08 0.43 8.09 -51.93 -0.42 0.01 16 34 H 0.08 0.33 8.09 -51.93 -0.42 -0.09 16 35 H 0.16 0.86 8.06 -52.49 -0.42 0.43 16 36 H 0.40 3.33 9.06 45.56 0.41 3.74 16 37 H 0.40 4.21 4.94 -40.82 -0.20 4.01 16 38 H 0.07 0.95 6.46 -51.93 -0.34 0.61 16 39 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.06 0.85 6.46 -51.93 -0.34 0.52 16 41 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.07 1.11 6.51 -51.93 -0.34 0.78 16 43 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.06 1.14 7.93 -51.93 -0.41 0.73 16 45 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 46 H 0.27 7.85 6.69 -40.82 -0.27 7.58 16 47 H 0.01 0.33 7.87 -51.93 -0.41 -0.08 16 48 H 0.08 1.95 6.31 -51.93 -0.33 1.63 16 49 H 0.07 1.17 6.51 -51.93 -0.34 0.83 16 50 H 0.04 0.58 6.46 -51.93 -0.34 0.25 16 51 H 0.14 1.03 6.52 -52.49 -0.34 0.69 16 LS Contribution 398.11 15.07 6.00 6.00 Total: -1.00 -33.55 398.11 -9.36 -42.91 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -7.06 Total: 5.67 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: -2.29 Total: -3.64 kcal Atomic # 7 Polarization: -55.48 SS G_CDS: -0.20 Total: -55.69 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: -0.71 Total: -14.96 kcal Atomic # 14 Polarization: 24.80 SS G_CDS: -5.10 Total: 19.70 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.55 -9.36 -42.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997809989.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.285 kcal (2) G-P(sol) polarization free energy of solvation -33.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds