Wall clock time and date at job start Wed Apr 1 2020 04:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50701 * 109.47353 * 2 1 4 4 C 1.38353 * 120.27537 * 89.99953 * 3 2 1 5 5 N 1.31876 * 121.18643 * 179.97438 * 4 3 2 6 6 C 1.32233 * 121.80504 * 0.02562 * 5 4 3 7 7 O 1.35425 * 119.80501 * 180.02562 * 6 5 4 8 8 C 1.40281 * 120.39536 * 0.02562 * 6 5 4 9 9 C 1.47532 * 120.59262 * 179.97438 * 8 6 5 10 10 O 1.21583 * 120.00542 * 0.02562 * 9 8 6 11 11 N 1.34779 * 119.99849 * 179.97438 * 9 8 6 12 12 C 1.46494 * 120.00241 * 179.97438 * 11 9 8 13 13 H 1.09001 * 109.47007 * 325.00160 * 12 11 9 14 14 C 1.53004 * 109.46999 * 85.00135 * 12 11 9 15 15 C 1.52999 * 109.47427 * 205.00369 * 12 11 9 16 16 C 1.53036 * 109.46312 * 180.02562 * 15 12 11 17 17 C 1.53189 * 109.31608 * 181.38684 * 16 15 12 18 18 N 1.46924 * 108.77173 * 305.36115 * 17 16 15 19 19 C 1.36937 * 120.63200 * 233.58519 * 18 17 16 20 20 H 1.07998 * 120.00002 * 27.81172 * 19 18 17 21 21 C 1.38816 * 120.00353 * 207.80515 * 19 18 17 22 22 N 1.31623 * 119.99605 * 25.85418 * 21 19 18 23 23 Si 1.86798 * 120.00303 * 205.57558 * 21 19 18 24 24 H 1.48496 * 109.47254 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.46775 * 120.00140 * 23 21 19 26 26 H 1.48502 * 109.47217 * 239.99955 * 23 21 19 27 27 C 1.46921 * 118.74129 * 53.86338 * 18 17 16 28 28 C 1.53045 * 109.45810 * 300.06808 * 15 12 11 29 29 C 1.38347 * 120.26722 * 270.30006 * 3 2 1 30 30 H 1.08995 * 109.47286 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47413 * 300.00314 * 1 2 3 32 32 H 1.09005 * 109.47190 * 60.00239 * 1 2 3 33 33 H 1.09005 * 109.47413 * 239.99686 * 2 1 3 34 34 H 1.09005 * 109.47190 * 119.99761 * 2 1 3 35 35 H 1.08000 * 119.40161 * 359.97438 * 4 3 2 36 36 H 0.96701 * 114.00266 * 270.02677 * 7 6 5 37 37 H 0.97006 * 119.99686 * 0.02562 * 11 9 8 38 38 H 1.08997 * 109.47117 * 180.02562 * 14 12 11 39 39 H 1.08994 * 109.47010 * 300.00015 * 14 12 11 40 40 H 1.09000 * 109.46745 * 60.00378 * 14 12 11 41 41 H 1.08999 * 109.45200 * 60.03091 * 15 12 11 42 42 H 1.09001 * 109.49887 * 61.43314 * 16 15 12 43 43 H 1.09006 * 109.49636 * 301.33768 * 16 15 12 44 44 H 1.09005 * 109.58901 * 185.57907 * 17 16 15 45 45 H 1.08993 * 109.58830 * 65.15058 * 17 16 15 46 46 H 0.96999 * 119.99925 * 4.04910 * 22 21 19 47 47 H 1.08995 * 109.59060 * 65.92401 * 27 18 17 48 48 H 1.08997 * 109.59199 * 186.35374 * 27 18 17 49 49 H 1.08999 * 109.49721 * 298.56498 * 28 15 12 50 50 H 1.08996 * 109.49889 * 58.66112 * 28 15 12 51 51 H 1.08002 * 120.82519 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2649 2.0784 1.1948 5 7 2.7049 3.3214 1.2158 6 6 2.9432 3.9952 0.1033 7 8 3.3951 5.2700 0.1720 8 6 2.7307 3.3974 -1.1479 9 6 2.9946 4.1453 -2.3919 10 8 3.4004 5.2902 -2.3386 11 7 2.7868 3.5591 -3.5876 12 6 3.0483 4.3019 -4.8229 13 1 2.7940 5.3516 -4.6764 14 6 4.5297 4.1818 -5.1863 15 6 2.1969 3.7242 -5.9553 16 6 2.4708 4.4999 -7.2458 17 6 1.5914 3.9414 -8.3690 18 7 1.8217 2.4942 -8.4745 19 6 2.1667 1.9281 -9.6727 20 1 2.6976 2.5098 -10.4118 21 6 1.8343 0.6066 -9.9375 22 7 0.8035 0.0538 -9.3340 23 14 2.8452 -0.3847 -11.1560 24 1 3.9380 0.4624 -11.6975 25 1 3.4284 -1.5656 -10.4701 26 1 1.9730 -0.8393 -12.2687 27 6 1.6686 1.6649 -7.2715 28 6 2.5530 2.2498 -6.1597 29 6 2.2589 2.0803 -1.1949 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.0827 1.5645 2.1271 36 1 2.6937 5.9354 0.1928 37 1 2.4634 2.6455 -3.6302 38 1 4.7243 4.7349 -6.1052 39 1 5.1361 4.5934 -4.3796 40 1 4.7839 3.1321 -5.3328 41 1 1.1417 3.8104 -5.6964 42 1 3.5207 4.3932 -7.5186 43 1 2.2394 5.5540 -7.0927 44 1 1.8529 4.4227 -9.3115 45 1 0.5425 4.1288 -8.1393 46 1 0.2411 0.5858 -8.7495 47 1 0.6259 1.6703 -6.9541 48 1 1.9811 0.6436 -7.4893 49 1 3.6021 2.1648 -6.4429 50 1 2.3802 1.7020 -5.2333 51 1 2.0806 1.5896 -2.1403 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997809989.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:49 Heat of formation + Delta-G solvation = -58.475649 kcal Electronic energy + Delta-G solvation = -31235.738275 eV Core-core repulsion = 27134.355801 eV Total energy + Delta-G solvation = -4101.382474 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.05765 -40.75020 -39.48171 -38.40219 -36.95575 -35.23919 -34.80552 -33.68509 -32.20061 -31.71275 -30.22534 -29.94730 -27.08541 -26.08514 -25.06440 -24.84299 -24.07748 -23.14204 -22.03624 -21.37610 -20.31728 -19.91928 -19.29464 -18.53721 -18.27109 -17.16184 -16.85651 -16.31833 -16.09524 -15.91300 -15.87217 -15.49486 -15.41373 -15.35537 -15.04702 -14.84774 -14.63100 -14.36300 -14.27822 -14.04070 -13.72488 -13.58338 -13.42205 -13.13493 -12.95694 -12.83096 -12.68199 -12.64850 -12.44817 -12.35433 -11.90261 -11.88089 -11.84192 -11.69524 -11.61642 -11.34963 -11.18225 -11.04276 -11.00209 -10.48326 -10.43797 -10.20084 -9.81893 -8.89293 -8.24692 -5.36414 -0.53369 -0.01934 1.59639 1.66340 1.73724 1.82931 1.97532 2.44921 2.66150 2.71212 3.22792 3.39716 3.54665 3.57691 3.65939 3.75216 3.78781 3.79865 3.94784 4.10593 4.25365 4.28861 4.35131 4.45163 4.49460 4.51337 4.52030 4.56473 4.64769 4.67930 4.79322 4.80943 4.88899 4.90622 4.94241 5.06500 5.12234 5.14056 5.16665 5.23262 5.26072 5.29073 5.31462 5.34933 5.43618 5.47952 5.62010 5.87475 6.38283 6.42241 6.50890 6.76283 7.09074 7.09556 7.81435 8.25350 9.01881 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012701 B = 0.002685 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.061567 B =10424.621245 C =12019.730378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.077 4.077 3 C -0.141 4.141 4 C 0.151 3.849 5 N -0.526 5.526 6 C 0.345 3.655 7 O -0.479 6.479 8 C -0.215 4.215 9 C 0.562 3.438 10 O -0.556 6.556 11 N -0.709 5.709 12 C 0.159 3.841 13 H 0.081 0.919 14 C -0.159 4.159 15 C -0.074 4.074 16 C -0.116 4.116 17 C 0.142 3.858 18 N -0.618 5.618 19 C -0.354 4.354 20 H 0.046 0.954 21 C -0.074 4.074 22 N -0.942 5.942 23 Si 1.116 2.884 24 H -0.277 1.277 25 H -0.285 1.285 26 H -0.293 1.293 27 C 0.156 3.844 28 C -0.117 4.117 29 C -0.027 4.027 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.047 0.953 33 H 0.084 0.916 34 H 0.099 0.901 35 H 0.196 0.804 36 H 0.416 0.584 37 H 0.407 0.593 38 H 0.073 0.927 39 H 0.047 0.953 40 H 0.061 0.939 41 H 0.070 0.930 42 H 0.063 0.937 43 H 0.079 0.921 44 H 0.047 0.953 45 H 0.013 0.987 46 H 0.255 0.745 47 H 0.005 0.995 48 H 0.044 0.956 49 H 0.060 0.940 50 H 0.074 0.926 51 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.948 1.984 21.619 21.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.115 4.115 3 C -0.143 4.143 4 C -0.007 4.007 5 N -0.245 5.245 6 C 0.166 3.834 7 O -0.289 6.289 8 C -0.221 4.221 9 C 0.349 3.651 10 O -0.436 6.436 11 N -0.362 5.362 12 C 0.055 3.945 13 H 0.099 0.901 14 C -0.217 4.217 15 C -0.093 4.093 16 C -0.155 4.155 17 C 0.017 3.983 18 N -0.343 5.343 19 C -0.484 4.484 20 H 0.064 0.936 21 C -0.271 4.271 22 N -0.584 5.584 23 Si 0.941 3.059 24 H -0.202 1.202 25 H -0.212 1.212 26 H -0.220 1.220 27 C 0.031 3.969 28 C -0.156 4.156 29 C -0.052 4.052 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.103 0.897 34 H 0.117 0.883 35 H 0.213 0.787 36 H 0.277 0.723 37 H 0.245 0.755 38 H 0.092 0.908 39 H 0.066 0.934 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.082 0.918 43 H 0.098 0.902 44 H 0.066 0.934 45 H 0.031 0.969 46 H 0.065 0.935 47 H 0.023 0.977 48 H 0.062 0.938 49 H 0.079 0.921 50 H 0.092 0.908 51 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 2.145 1.577 21.677 21.840 hybrid contribution -1.106 1.204 -0.460 1.698 sum 1.039 2.781 21.217 21.424 Atomic orbital electron populations 1.21793 0.94118 1.02814 1.02058 1.20571 0.96395 0.89395 1.05130 1.21157 1.00957 0.99442 0.92793 1.23272 0.89955 0.87876 0.99581 1.67375 1.14730 1.11183 1.31175 1.19332 0.89974 0.87184 0.86905 1.84667 1.36348 1.12437 1.95424 1.21056 1.09497 0.97805 0.93765 1.18078 0.77389 0.85986 0.83620 1.90782 1.46499 1.18743 1.87539 1.46012 1.67284 1.18012 1.04864 1.20878 0.95189 0.96138 0.82298 0.90092 1.22186 0.95280 1.02575 1.01624 1.21176 0.99107 0.95194 0.93853 1.21930 1.00460 0.99008 0.94102 1.21026 0.95810 0.84250 0.97191 1.44382 1.81619 1.03056 1.05199 1.20225 1.33282 0.98988 0.95877 0.93578 1.27078 0.98143 0.98077 1.03789 1.70857 1.13833 1.40785 1.32900 0.82839 0.74488 0.74762 0.73826 1.20191 1.21170 1.21999 1.20905 0.95132 0.94635 0.86268 1.22079 1.00167 0.95371 0.98021 1.21928 0.91557 0.91203 1.00554 0.91012 0.92160 0.93356 0.89717 0.88276 0.78696 0.72286 0.75494 0.90796 0.93414 0.92009 0.91181 0.91809 0.90222 0.93420 0.96912 0.93489 0.97719 0.93755 0.92130 0.90806 0.82242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.89 71.98 0.71 -0.52 16 2 C -0.08 -0.59 6.08 29.85 0.18 -0.41 16 3 C -0.14 -1.79 5.14 -19.81 -0.10 -1.89 16 4 C 0.15 2.14 10.84 84.71 0.92 3.06 16 5 N -0.53 -11.23 10.37 -308.01 -3.19 -14.43 16 6 C 0.35 8.27 7.77 85.13 0.66 8.94 16 7 O -0.48 -12.09 11.66 -66.38 -0.77 -12.86 16 8 C -0.21 -4.75 5.90 -19.91 -0.12 -4.86 16 9 C 0.56 14.63 7.74 86.69 0.67 15.30 16 10 O -0.56 -18.09 14.86 16.84 0.25 -17.84 16 11 N -0.71 -16.10 4.95 -445.71 -2.21 -18.30 16 12 C 0.16 4.01 2.40 44.99 0.11 4.12 16 13 H 0.08 2.19 7.58 -2.39 -0.02 2.17 16 14 C -0.16 -4.05 8.78 71.98 0.63 -3.41 16 15 C -0.07 -2.08 2.14 -10.77 -0.02 -2.10 16 16 C -0.12 -3.56 4.96 30.67 0.15 -3.41 16 17 C 0.14 5.69 6.51 86.36 0.56 6.26 16 18 N -0.62 -29.77 2.85 -698.28 -1.99 -31.76 16 19 C -0.35 -19.43 9.49 84.03 0.80 -18.63 16 20 H 0.05 2.57 7.95 -2.91 -0.02 2.55 16 21 C -0.07 -4.14 4.66 84.86 0.40 -3.74 16 22 N -0.94 -55.79 12.46 21.65 0.27 -55.52 16 23 Si 1.12 50.18 29.99 68.60 2.06 52.24 16 24 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 25 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 26 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 27 C 0.16 6.82 4.72 86.51 0.41 7.23 16 28 C -0.12 -3.72 4.83 30.82 0.15 -3.57 16 29 C -0.03 -0.42 9.31 22.72 0.21 -0.21 16 30 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.06 0.45 8.14 -2.38 -0.02 0.44 16 32 H 0.05 0.50 8.14 -2.38 -0.02 0.48 16 33 H 0.08 0.62 8.09 -2.38 -0.02 0.60 16 34 H 0.10 0.41 8.09 -2.38 -0.02 0.39 16 35 H 0.20 1.36 8.06 -2.91 -0.02 1.33 16 36 H 0.42 7.18 9.06 -74.06 -0.67 6.51 16 37 H 0.41 7.59 4.94 -92.70 -0.46 7.13 16 38 H 0.07 1.84 6.46 -2.39 -0.02 1.82 16 39 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.06 1.58 6.46 -2.39 -0.02 1.56 16 41 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.06 2.03 6.51 -2.39 -0.02 2.01 16 43 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 44 H 0.05 1.94 7.93 -2.38 -0.02 1.92 16 45 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 46 H 0.26 15.35 6.69 -92.71 -0.62 14.73 16 47 H 0.00 0.22 7.87 -2.39 -0.02 0.20 16 48 H 0.04 2.23 6.31 -2.39 -0.02 2.22 16 49 H 0.06 2.03 6.51 -2.39 -0.02 2.01 16 50 H 0.07 1.86 6.46 -2.39 -0.02 1.85 16 51 H 0.16 1.86 6.52 -2.91 -0.02 1.84 16 Total: -1.00 -74.11 398.11 0.71 -73.40 By element: Atomic # 1 Polarization: 22.98 SS G_CDS: -0.02 Total: 22.96 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: 6.32 Total: 2.14 kcal Atomic # 7 Polarization: -112.90 SS G_CDS: -7.12 Total: -120.02 kcal Atomic # 8 Polarization: -30.19 SS G_CDS: -0.52 Total: -30.71 kcal Atomic # 14 Polarization: 50.18 SS G_CDS: 2.06 Total: 52.24 kcal Total: -74.11 0.71 -73.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997809989.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.920 kcal (2) G-P(sol) polarization free energy of solvation -74.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds