Wall clock time and date at job start Wed Apr 1 2020 06:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50695 * 109.47147 * 2 1 4 4 O 1.34251 * 126.52833 * 270.04144 * 3 2 1 5 5 C 1.34055 * 108.23183 * 179.97438 * 4 3 2 6 6 N 1.29936 * 109.23793 * 359.74293 * 5 4 3 7 7 C 1.36061 * 108.48004 * 0.40771 * 6 5 4 8 8 C 1.47424 * 126.44865 * 179.85962 * 7 6 5 9 9 O 1.21617 * 119.99542 * 186.55001 * 8 7 6 10 10 N 1.34769 * 120.00347 * 6.54816 * 8 7 6 11 11 C 1.46994 * 120.61663 * 186.09478 * 10 8 7 12 12 C 1.53194 * 108.74111 * 126.38776 * 11 10 8 13 13 C 1.53039 * 109.33773 * 54.61662 * 12 11 10 14 14 C 1.53002 * 109.45837 * 178.60047 * 13 12 11 15 15 H 1.08997 * 109.87818 * 175.92110 * 14 13 12 16 16 C 1.54327 * 109.88401 * 54.74173 * 14 13 12 17 17 C 1.55154 * 102.94272 * 218.39347 * 16 14 13 18 18 C 1.54901 * 101.58410 * 35.50131 * 17 16 14 19 19 N 1.47029 * 109.88364 * 296.93697 * 14 13 12 20 20 C 1.36936 * 125.64382 * 298.39482 * 19 14 13 21 21 H 1.08000 * 120.00606 * 353.72257 * 20 19 14 22 22 C 1.38818 * 120.00008 * 173.72519 * 20 19 14 23 23 N 1.31618 * 119.99707 * 359.97438 * 22 20 19 24 24 Si 1.86790 * 120.00171 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47279 * 60.00093 * 24 22 20 26 26 H 1.48504 * 109.47083 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.47264 * 300.00019 * 24 22 20 28 28 C 1.53040 * 109.54247 * 298.61884 * 13 12 11 29 29 C 1.46934 * 120.62704 * 6.06420 * 10 8 7 30 30 H 1.08997 * 109.46915 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46951 * 300.00109 * 1 2 3 32 32 H 1.09004 * 109.46593 * 60.00180 * 1 2 3 33 33 H 1.09000 * 109.46951 * 239.99890 * 2 1 3 34 34 H 1.09004 * 109.46593 * 119.99820 * 2 1 3 35 35 H 1.08002 * 125.38019 * 179.97438 * 5 4 3 36 36 H 1.08993 * 109.62792 * 6.59429 * 11 10 8 37 37 H 1.08998 * 109.57645 * 246.14255 * 11 10 8 38 38 H 1.08998 * 109.49145 * 294.65245 * 12 11 10 39 39 H 1.08999 * 109.49920 * 174.58910 * 12 11 10 40 40 H 1.08995 * 109.46145 * 58.64834 * 13 12 11 41 41 H 1.09005 * 110.71694 * 336.75808 * 16 14 13 42 42 H 1.08997 * 110.71991 * 100.02354 * 16 14 13 43 43 H 1.09003 * 110.99951 * 277.42553 * 17 16 14 44 44 H 1.09006 * 111.00186 * 153.57861 * 17 16 14 45 45 H 1.08999 * 110.36905 * 204.15345 * 18 17 16 46 46 H 1.09000 * 110.46145 * 81.87540 * 18 17 16 47 47 H 0.97001 * 120.00423 * 179.97438 * 23 22 20 48 48 H 1.08998 * 109.49956 * 181.31915 * 28 13 12 49 49 H 1.09002 * 109.49504 * 301.38397 * 28 13 12 50 50 H 1.09001 * 109.58254 * 113.84366 * 29 10 8 51 51 H 1.08997 * 109.70327 * 353.49576 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2980 2.1744 -1.0788 5 6 2.7220 3.3745 -0.6579 6 7 2.7245 3.3962 0.6412 7 6 2.3026 2.1844 1.0937 8 6 2.1590 1.7773 2.5033 9 8 1.8851 0.6248 2.7784 10 7 2.3313 2.6823 3.4870 11 6 2.3235 2.2662 4.8968 12 6 3.6057 2.7709 5.5660 13 6 3.7254 4.2822 5.3569 14 6 4.9872 4.7949 6.0540 15 1 5.1181 5.8574 5.8492 16 6 6.2178 4.0061 5.5588 17 6 7.0672 3.8427 6.8469 18 6 5.9681 3.6706 7.9246 19 7 4.8821 4.5745 7.5039 20 6 3.9322 5.1181 8.3269 21 1 3.2375 5.8494 7.9407 22 6 3.8622 4.7294 9.6577 23 7 4.7084 3.8379 10.1283 24 14 2.5669 5.4715 10.7805 25 1 1.2152 5.1668 10.2462 26 1 2.7030 4.8947 12.1422 27 1 2.7531 6.9434 10.8461 28 6 3.8109 4.5867 3.8595 29 6 2.5310 4.1031 3.1704 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8901 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8901 35 1 3.0119 4.1949 -1.2977 36 1 2.2834 1.1787 4.9573 37 1 1.4562 2.6945 5.3992 38 1 4.4678 2.2729 5.1225 39 1 3.5691 2.5531 6.6334 40 1 2.8511 4.7776 5.7789 41 1 5.9202 3.0333 5.1671 42 1 6.7636 4.5754 4.8064 43 1 7.6644 4.7347 7.0367 44 1 7.6992 2.9565 6.7883 45 1 6.3474 3.9635 8.9036 46 1 5.6156 2.6394 7.9482 47 1 4.6598 3.5665 11.0583 48 1 3.9197 5.6612 3.7123 49 1 4.6715 4.0719 3.4322 50 1 1.6806 4.6811 3.5321 51 1 2.6265 4.2295 2.0920 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001004381204.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:00:37 Heat of formation + Delta-G solvation = 20.372743 kcal Electronic energy + Delta-G solvation = -32141.504811 eV Core-core repulsion = 28043.541460 eV Total energy + Delta-G solvation = -4097.963352 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.75695 -39.96927 -38.34637 -36.36489 -35.20708 -34.38829 -32.91388 -32.03255 -30.78201 -29.55335 -29.26848 -27.57057 -25.24294 -24.52411 -24.04181 -23.25781 -22.95972 -21.73625 -21.02564 -20.09283 -19.56613 -18.35959 -17.50052 -17.14254 -16.74427 -16.37172 -15.86716 -15.27654 -15.10370 -14.84371 -14.72904 -14.55587 -14.04399 -13.85605 -13.68522 -13.63136 -13.22109 -13.04127 -12.89450 -12.56990 -12.21702 -12.02707 -11.93695 -11.82053 -11.63960 -11.43721 -11.40204 -11.21666 -10.96643 -10.88712 -10.74735 -10.52806 -10.26368 -10.13334 -10.07492 -9.84422 -9.68245 -9.56625 -9.34063 -9.26658 -9.21486 -8.55815 -8.37243 -6.74263 -5.63379 -2.99719 0.87652 1.78896 2.26851 3.06331 3.24215 3.42839 3.47699 3.48452 3.76337 4.30338 4.49403 4.53735 4.75277 4.89275 4.99156 5.17997 5.23075 5.29385 5.37303 5.47049 5.50853 5.54427 5.55371 5.57767 5.60719 5.75830 5.79729 5.80830 5.85495 5.89089 5.98552 6.01869 6.05512 6.28295 6.32991 6.39167 6.44647 6.46505 6.59639 6.65907 6.68808 6.74011 6.85267 7.03537 7.13394 7.16903 7.21941 7.57683 7.64650 7.67804 7.91034 8.18261 8.38860 9.28205 9.90042 10.57517 11.44598 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016922 B = 0.002792 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.223754 B =10025.103389 C =10578.453747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.048 4.048 3 C 0.043 3.957 4 O -0.199 6.199 5 C 0.173 3.827 6 N -0.456 5.456 7 C -0.065 4.065 8 C 0.596 3.404 9 O -0.544 6.544 10 N -0.584 5.584 11 C 0.111 3.889 12 C -0.117 4.117 13 C -0.095 4.095 14 C 0.168 3.832 15 H 0.030 0.970 16 C -0.129 4.129 17 C -0.149 4.149 18 C 0.165 3.835 19 N -0.594 5.594 20 C -0.218 4.218 21 H 0.074 0.926 22 C -0.009 4.009 23 N -0.921 5.921 24 Si 0.908 3.092 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.287 1.287 28 C -0.121 4.121 29 C 0.065 3.935 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.084 0.916 34 H 0.120 0.880 35 H 0.255 0.745 36 H 0.086 0.914 37 H 0.067 0.933 38 H 0.058 0.942 39 H 0.092 0.908 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.052 0.948 43 H 0.055 0.945 44 H 0.053 0.947 45 H 0.087 0.913 46 H 0.016 0.984 47 H 0.251 0.749 48 H 0.067 0.933 49 H 0.060 0.940 50 H 0.056 0.944 51 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.786 -3.374 -23.581 24.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.086 4.086 3 C -0.014 4.014 4 O -0.085 6.085 5 C -0.054 4.054 6 N -0.185 5.185 7 C -0.185 4.185 8 C 0.383 3.617 9 O -0.423 6.423 10 N -0.315 5.315 11 C -0.011 4.011 12 C -0.154 4.154 13 C -0.116 4.116 14 C 0.060 3.940 15 H 0.048 0.952 16 C -0.167 4.167 17 C -0.188 4.188 18 C 0.041 3.959 19 N -0.318 5.318 20 C -0.347 4.347 21 H 0.092 0.908 22 C -0.205 4.205 23 N -0.569 5.569 24 Si 0.739 3.261 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.213 1.213 28 C -0.160 4.160 29 C -0.058 4.058 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.103 0.897 34 H 0.138 0.862 35 H 0.270 0.730 36 H 0.104 0.896 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.110 0.890 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.071 0.929 43 H 0.074 0.926 44 H 0.072 0.928 45 H 0.105 0.895 46 H 0.034 0.966 47 H 0.062 0.938 48 H 0.085 0.915 49 H 0.079 0.921 50 H 0.074 0.926 51 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -3.823 -3.473 -22.801 23.379 hybrid contribution -0.784 0.278 0.234 0.864 sum -4.606 -3.195 -22.567 23.253 Atomic orbital electron populations 1.21711 0.93118 1.02948 1.02387 1.20425 0.97038 0.85439 1.05651 1.23790 0.98791 0.95573 0.83204 1.84370 1.63664 1.24155 1.36313 1.28220 0.98663 0.86965 0.91601 1.70381 1.18097 1.20739 1.09299 1.21564 1.10035 0.91115 0.95737 1.16777 0.77497 0.84883 0.82518 1.90750 1.50152 1.18478 1.82888 1.47977 1.68748 1.08497 1.06234 1.21816 0.99324 1.00966 0.78961 1.21892 0.95421 0.96106 1.02028 1.21614 1.01027 0.95698 0.93258 1.20906 0.91643 0.95856 0.85587 0.95191 1.22694 0.96741 1.00078 0.97189 1.23008 0.98590 0.99870 0.97345 1.21621 0.85512 0.92684 0.96126 1.44524 1.31839 1.54784 1.00632 1.18934 1.07884 1.17359 0.90500 0.90841 1.24757 0.99314 0.99107 0.97317 1.69893 1.38039 1.34595 1.14404 0.86255 0.81310 0.78416 0.80120 1.21290 1.21719 1.21337 1.21881 0.97133 1.00605 0.96340 1.22910 0.97634 0.79245 1.05966 0.90988 0.91850 0.92644 0.89745 0.86165 0.72961 0.89570 0.91491 0.92316 0.88997 0.91360 0.91500 0.92911 0.92612 0.92799 0.89513 0.96645 0.93824 0.91479 0.92079 0.92586 0.83933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.90 37.16 0.37 -0.80 16 2 C -0.05 -0.43 6.01 -27.88 -0.17 -0.60 16 3 C 0.04 0.46 6.69 -35.08 -0.23 0.23 16 4 O -0.20 -1.79 10.73 6.52 0.07 -1.72 16 5 C 0.17 1.31 13.19 51.96 0.69 2.00 16 6 N -0.46 -5.10 7.74 -11.48 -0.09 -5.19 16 7 C -0.07 -0.84 6.72 -83.02 -0.56 -1.40 16 8 C 0.60 9.24 7.68 -12.52 -0.10 9.14 16 9 O -0.54 -9.25 14.23 5.26 0.07 -9.18 16 10 N -0.58 -9.05 2.97 -173.98 -0.52 -9.57 16 11 C 0.11 1.84 6.42 -3.67 -0.02 1.82 16 12 C -0.12 -2.12 4.89 -26.61 -0.13 -2.25 16 13 C -0.10 -1.71 1.94 -90.58 -0.18 -1.88 16 14 C 0.17 3.38 2.90 -66.95 -0.19 3.18 16 15 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 16 C -0.13 -2.31 5.34 -24.90 -0.13 -2.44 16 17 C -0.15 -2.90 7.08 -24.59 -0.17 -3.08 16 18 C 0.17 3.99 5.64 -2.54 -0.01 3.98 16 19 N -0.59 -14.58 2.50 -162.57 -0.41 -14.99 16 20 C -0.22 -5.89 9.78 -15.06 -0.15 -6.04 16 21 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 22 C -0.01 -0.25 5.48 -17.43 -0.10 -0.35 16 23 N -0.92 -26.70 10.26 55.49 0.57 -26.13 16 24 Si 0.91 22.07 29.55 -169.99 -5.02 17.04 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 27 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 28 C -0.12 -1.79 5.17 -26.61 -0.14 -1.92 16 29 C 0.06 0.91 6.32 -3.71 -0.02 0.89 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.12 1.28 6.36 -51.93 -0.33 0.95 16 35 H 0.25 0.55 8.06 -52.49 -0.42 0.12 16 36 H 0.09 1.46 7.05 -51.93 -0.37 1.09 16 37 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.06 1.06 5.91 -51.93 -0.31 0.76 16 39 H 0.09 1.99 7.68 -51.93 -0.40 1.59 16 40 H 0.07 1.36 7.90 -51.93 -0.41 0.95 16 41 H 0.07 1.18 5.44 -51.93 -0.28 0.90 16 42 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.09 2.37 6.31 -51.93 -0.33 2.04 16 46 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 48 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 49 H 0.06 0.92 7.45 -51.93 -0.39 0.53 16 50 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 51 H 0.14 1.87 3.68 -76.36 -0.28 1.59 16 LS Contribution 390.12 15.07 5.88 5.88 Total: -1.00 -31.79 390.12 -8.83 -40.61 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -8.13 Total: 2.79 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: -1.25 Total: 0.46 kcal Atomic # 7 Polarization: -55.44 SS G_CDS: -0.44 Total: -55.88 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.14 Total: -10.90 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.79 -8.83 -40.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001004381204.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.986 kcal (2) G-P(sol) polarization free energy of solvation -31.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds