Wall clock time and date at job start Wed Apr 1 2020 06:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50695 * 109.47147 * 2 1 4 4 O 1.34251 * 126.52833 * 270.04144 * 3 2 1 5 5 C 1.34055 * 108.23183 * 179.97438 * 4 3 2 6 6 N 1.29936 * 109.23793 * 359.74293 * 5 4 3 7 7 C 1.36061 * 108.48004 * 0.40771 * 6 5 4 8 8 C 1.47424 * 126.44865 * 179.85962 * 7 6 5 9 9 O 1.21617 * 119.99542 * 186.55001 * 8 7 6 10 10 N 1.34769 * 120.00347 * 6.54816 * 8 7 6 11 11 C 1.46994 * 120.61663 * 186.09478 * 10 8 7 12 12 C 1.53194 * 108.74111 * 126.38776 * 11 10 8 13 13 C 1.53039 * 109.33773 * 54.61662 * 12 11 10 14 14 C 1.53002 * 109.45837 * 178.60047 * 13 12 11 15 15 H 1.08997 * 109.87818 * 175.92110 * 14 13 12 16 16 C 1.54327 * 109.88401 * 54.74173 * 14 13 12 17 17 C 1.55154 * 102.94272 * 218.39347 * 16 14 13 18 18 C 1.54901 * 101.58410 * 35.50131 * 17 16 14 19 19 N 1.47029 * 109.88364 * 296.93697 * 14 13 12 20 20 C 1.36936 * 125.64382 * 298.39482 * 19 14 13 21 21 H 1.08000 * 120.00606 * 353.72257 * 20 19 14 22 22 C 1.38818 * 120.00008 * 173.72519 * 20 19 14 23 23 N 1.31618 * 119.99707 * 359.97438 * 22 20 19 24 24 Si 1.86790 * 120.00171 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47279 * 60.00093 * 24 22 20 26 26 H 1.48504 * 109.47083 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.47264 * 300.00019 * 24 22 20 28 28 C 1.53040 * 109.54247 * 298.61884 * 13 12 11 29 29 C 1.46934 * 120.62704 * 6.06420 * 10 8 7 30 30 H 1.08997 * 109.46915 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46951 * 300.00109 * 1 2 3 32 32 H 1.09004 * 109.46593 * 60.00180 * 1 2 3 33 33 H 1.09000 * 109.46951 * 239.99890 * 2 1 3 34 34 H 1.09004 * 109.46593 * 119.99820 * 2 1 3 35 35 H 1.08002 * 125.38019 * 179.97438 * 5 4 3 36 36 H 1.08993 * 109.62792 * 6.59429 * 11 10 8 37 37 H 1.08998 * 109.57645 * 246.14255 * 11 10 8 38 38 H 1.08998 * 109.49145 * 294.65245 * 12 11 10 39 39 H 1.08999 * 109.49920 * 174.58910 * 12 11 10 40 40 H 1.08995 * 109.46145 * 58.64834 * 13 12 11 41 41 H 1.09005 * 110.71694 * 336.75808 * 16 14 13 42 42 H 1.08997 * 110.71991 * 100.02354 * 16 14 13 43 43 H 1.09003 * 110.99951 * 277.42553 * 17 16 14 44 44 H 1.09006 * 111.00186 * 153.57861 * 17 16 14 45 45 H 1.08999 * 110.36905 * 204.15345 * 18 17 16 46 46 H 1.09000 * 110.46145 * 81.87540 * 18 17 16 47 47 H 0.97001 * 120.00423 * 179.97438 * 23 22 20 48 48 H 1.08998 * 109.49956 * 181.31915 * 28 13 12 49 49 H 1.09002 * 109.49504 * 301.38397 * 28 13 12 50 50 H 1.09001 * 109.58254 * 113.84366 * 29 10 8 51 51 H 1.08997 * 109.70327 * 353.49576 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2980 2.1744 -1.0788 5 6 2.7220 3.3745 -0.6579 6 7 2.7245 3.3962 0.6412 7 6 2.3026 2.1844 1.0937 8 6 2.1590 1.7773 2.5033 9 8 1.8851 0.6248 2.7784 10 7 2.3313 2.6823 3.4870 11 6 2.3235 2.2662 4.8968 12 6 3.6057 2.7709 5.5660 13 6 3.7254 4.2822 5.3569 14 6 4.9872 4.7949 6.0540 15 1 5.1181 5.8574 5.8492 16 6 6.2178 4.0061 5.5588 17 6 7.0672 3.8427 6.8469 18 6 5.9681 3.6706 7.9246 19 7 4.8821 4.5745 7.5039 20 6 3.9322 5.1181 8.3269 21 1 3.2375 5.8494 7.9407 22 6 3.8622 4.7294 9.6577 23 7 4.7084 3.8379 10.1283 24 14 2.5669 5.4715 10.7805 25 1 1.2152 5.1668 10.2462 26 1 2.7030 4.8947 12.1422 27 1 2.7531 6.9434 10.8461 28 6 3.8109 4.5867 3.8595 29 6 2.5310 4.1031 3.1704 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8901 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8901 35 1 3.0119 4.1949 -1.2977 36 1 2.2834 1.1787 4.9573 37 1 1.4562 2.6945 5.3992 38 1 4.4678 2.2729 5.1225 39 1 3.5691 2.5531 6.6334 40 1 2.8511 4.7776 5.7789 41 1 5.9202 3.0333 5.1671 42 1 6.7636 4.5754 4.8064 43 1 7.6644 4.7347 7.0367 44 1 7.6992 2.9565 6.7883 45 1 6.3474 3.9635 8.9036 46 1 5.6156 2.6394 7.9482 47 1 4.6598 3.5665 11.0583 48 1 3.9197 5.6612 3.7123 49 1 4.6715 4.0719 3.4322 50 1 1.6806 4.6811 3.5321 51 1 2.6265 4.2295 2.0920 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001004381204.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:00:35 Heat of formation + Delta-G solvation = 1.265545 kcal Electronic energy + Delta-G solvation = -32142.333362 eV Core-core repulsion = 28043.541460 eV Total energy + Delta-G solvation = -4098.791902 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -44.49919 -41.24191 -39.84776 -37.78823 -36.03648 -35.12872 -34.68203 -33.63608 -32.07668 -31.22804 -30.32319 -29.07967 -26.66189 -26.13535 -25.02813 -24.38603 -24.08322 -22.79008 -22.29728 -21.74514 -20.80953 -19.78650 -18.69955 -18.45815 -17.89690 -17.46115 -17.04487 -16.77143 -16.35598 -16.17659 -15.83892 -15.72498 -15.54405 -15.30537 -15.01614 -14.56627 -14.47662 -14.28309 -14.03844 -13.81208 -13.66933 -13.53776 -13.39975 -13.11556 -12.83889 -12.76770 -12.67445 -12.61947 -12.43370 -12.24631 -12.14752 -12.06323 -11.89874 -11.75476 -11.57416 -11.44135 -11.27255 -11.22211 -10.92813 -10.64849 -10.46980 -10.05503 -9.61826 -8.76228 -7.75575 -5.12444 0.04192 1.03298 1.45636 1.47780 1.53761 1.55019 1.96151 2.18121 2.52447 3.03808 3.38078 3.53640 3.62595 3.68632 3.86622 3.95324 4.08327 4.15029 4.18871 4.21726 4.25272 4.27265 4.30685 4.34321 4.40166 4.52751 4.59518 4.67540 4.76118 4.78576 4.83145 4.88341 4.89984 4.94040 5.06232 5.08840 5.11696 5.13012 5.20723 5.23785 5.25469 5.26687 5.45495 5.54152 5.62200 5.65740 5.72021 5.79640 5.86228 6.28449 6.33388 6.53245 7.01470 7.17474 7.87609 8.53404 9.31100 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016922 B = 0.002792 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.223754 B =10025.103389 C =10578.453747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.050 4.050 3 C 0.050 3.950 4 O -0.194 6.194 5 C 0.203 3.797 6 N -0.487 5.487 7 C -0.095 4.095 8 C 0.591 3.409 9 O -0.569 6.569 10 N -0.589 5.589 11 C 0.119 3.881 12 C -0.103 4.103 13 C -0.086 4.086 14 C 0.160 3.840 15 H 0.032 0.968 16 C -0.116 4.116 17 C -0.137 4.137 18 C 0.170 3.830 19 N -0.610 5.610 20 C -0.220 4.220 21 H 0.076 0.924 22 C -0.067 4.067 23 N -0.950 5.950 24 Si 0.969 3.031 25 H -0.281 1.281 26 H -0.298 1.298 27 H -0.278 1.278 28 C -0.108 4.108 29 C 0.067 3.933 30 H 0.086 0.914 31 H 0.037 0.963 32 H 0.068 0.932 33 H 0.111 0.889 34 H 0.099 0.901 35 H 0.308 0.692 36 H 0.078 0.922 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.049 0.951 40 H 0.045 0.955 41 H 0.070 0.930 42 H 0.086 0.914 43 H 0.061 0.939 44 H 0.075 0.925 45 H 0.049 0.951 46 H -0.014 1.014 47 H 0.243 0.757 48 H 0.085 0.915 49 H 0.066 0.934 50 H 0.054 0.946 51 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.638 -2.163 -27.679 28.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.087 4.087 3 C -0.007 4.007 4 O -0.080 6.080 5 C -0.024 4.024 6 N -0.216 5.216 7 C -0.213 4.213 8 C 0.380 3.620 9 O -0.450 6.450 10 N -0.319 5.319 11 C -0.004 4.004 12 C -0.141 4.141 13 C -0.107 4.107 14 C 0.053 3.947 15 H 0.050 0.950 16 C -0.154 4.154 17 C -0.176 4.176 18 C 0.045 3.955 19 N -0.334 5.334 20 C -0.350 4.350 21 H 0.094 0.906 22 C -0.259 4.259 23 N -0.600 5.600 24 Si 0.798 3.202 25 H -0.208 1.208 26 H -0.224 1.224 27 H -0.205 1.205 28 C -0.147 4.147 29 C -0.055 4.055 30 H 0.105 0.895 31 H 0.057 0.943 32 H 0.087 0.913 33 H 0.130 0.870 34 H 0.117 0.883 35 H 0.322 0.678 36 H 0.096 0.904 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.067 0.933 40 H 0.063 0.937 41 H 0.088 0.912 42 H 0.105 0.895 43 H 0.080 0.920 44 H 0.094 0.906 45 H 0.068 0.932 46 H 0.004 0.996 47 H 0.053 0.947 48 H 0.104 0.896 49 H 0.084 0.916 50 H 0.073 0.927 51 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -3.676 -2.235 -26.933 27.275 hybrid contribution -0.826 -0.087 1.392 1.621 sum -4.502 -2.322 -25.542 26.039 Atomic orbital electron populations 1.21680 0.92485 1.03774 1.01739 1.20469 0.97495 0.84798 1.05930 1.23964 0.97633 0.96001 0.83104 1.84422 1.63629 1.24576 1.35396 1.29385 0.95046 0.86970 0.90980 1.70147 1.20015 1.20197 1.11218 1.21217 1.12731 0.92796 0.94566 1.17184 0.76663 0.84452 0.83704 1.90728 1.51132 1.19481 1.83627 1.48006 1.69158 1.09291 1.05458 1.21551 0.98208 1.00373 0.80224 1.21672 0.96328 0.96661 0.99399 1.21458 0.98870 0.94775 0.95565 1.21150 0.93766 0.96387 0.83349 0.95040 1.22649 0.95365 1.00383 0.96985 1.22878 0.97408 1.01181 0.96121 1.21375 0.86963 0.90923 0.96281 1.44745 1.31515 1.54426 1.02698 1.19244 1.07946 1.16822 0.90976 0.90601 1.25500 1.01451 1.00135 0.98851 1.70130 1.39678 1.36202 1.14014 0.85291 0.79167 0.77873 0.77869 1.20777 1.22406 1.20457 1.21782 0.97775 1.01848 0.93269 1.23056 0.97091 0.78191 1.07120 0.89520 0.94333 0.91303 0.87026 0.88264 0.67756 0.90373 0.92019 0.92125 0.93265 0.93695 0.91201 0.89502 0.91992 0.90606 0.93242 0.99623 0.94735 0.89631 0.91552 0.92734 0.82060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 9.90 71.98 0.71 -1.35 16 2 C -0.05 -0.82 6.01 29.85 0.18 -0.64 16 3 C 0.05 0.98 6.69 25.19 0.17 1.15 16 4 O -0.19 -2.75 10.73 0.40 0.00 -2.75 16 5 C 0.20 2.16 13.19 130.52 1.72 3.88 16 6 N -0.49 -9.39 7.74 -305.14 -2.36 -11.76 16 7 C -0.10 -2.33 6.72 40.41 0.27 -2.05 16 8 C 0.59 18.27 7.68 86.66 0.67 18.94 16 9 O -0.57 -19.88 14.23 -4.08 -0.06 -19.93 16 10 N -0.59 -18.19 2.97 -822.60 -2.45 -20.64 16 11 C 0.12 4.11 6.42 86.35 0.55 4.66 16 12 C -0.10 -3.85 4.89 30.67 0.15 -3.70 16 13 C -0.09 -3.08 1.94 -10.77 -0.02 -3.10 16 14 C 0.16 6.34 2.90 45.34 0.13 6.47 16 15 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 16 C -0.12 -3.92 5.34 31.78 0.17 -3.75 16 17 C -0.14 -5.20 7.08 31.98 0.23 -4.98 16 18 C 0.17 8.51 5.64 86.85 0.49 9.00 16 19 N -0.61 -30.74 2.50 -668.26 -1.67 -32.41 16 20 C -0.22 -12.25 9.78 84.04 0.82 -11.43 16 21 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 22 C -0.07 -3.84 5.48 84.86 0.47 -3.37 16 23 N -0.95 -57.76 10.26 21.65 0.22 -57.54 16 24 Si 0.97 46.68 29.55 68.60 2.03 48.71 16 25 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 26 H -0.30 -14.54 7.11 99.48 0.71 -13.84 16 27 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 28 C -0.11 -2.98 5.17 30.67 0.16 -2.82 16 29 C 0.07 1.79 6.32 86.36 0.55 2.33 16 30 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 33 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.10 2.10 6.36 -2.38 -0.02 2.09 16 35 H 0.31 -0.64 8.06 -2.91 -0.02 -0.66 16 36 H 0.08 2.80 7.05 -2.39 -0.02 2.79 16 37 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.06 2.23 5.91 -2.39 -0.01 2.21 16 39 H 0.05 2.27 7.68 -2.39 -0.02 2.25 16 40 H 0.04 1.81 7.90 -2.39 -0.02 1.79 16 41 H 0.07 2.34 5.44 -2.38 -0.01 2.32 16 42 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 43 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 44 H 0.08 2.54 8.14 -2.38 -0.02 2.52 16 45 H 0.05 2.84 6.31 -2.39 -0.02 2.82 16 46 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 47 H 0.24 14.54 8.31 -92.71 -0.77 13.77 16 48 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 49 H 0.07 1.80 7.45 -2.39 -0.02 1.78 16 50 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 51 H 0.16 3.83 3.68 -50.62 -0.19 3.64 16 Total: -1.00 -73.69 390.12 3.89 -69.80 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: 0.76 Total: 17.28 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: 7.41 Total: 9.23 kcal Atomic # 7 Polarization: -116.09 SS G_CDS: -6.25 Total: -122.35 kcal Atomic # 8 Polarization: -22.63 SS G_CDS: -0.05 Total: -22.68 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.71 kcal Total: -73.69 3.89 -69.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001004381204.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.069 kcal (2) G-P(sol) polarization free energy of solvation -73.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds