Wall clock time and date at job start Wed Apr 1 2020 06:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50693 * 109.47188 * 2 1 4 4 O 1.34252 * 126.52658 * 269.95038 * 3 2 1 5 5 C 1.34048 * 108.22989 * 180.02562 * 4 3 2 6 6 N 1.29936 * 109.24322 * 359.75404 * 5 4 3 7 7 C 1.36068 * 108.47283 * 0.39785 * 6 5 4 8 8 C 1.47418 * 126.44491 * 179.86411 * 7 6 5 9 9 O 1.21616 * 119.99784 * 186.27409 * 8 7 6 10 10 N 1.34775 * 120.00048 * 6.27050 * 8 7 6 11 11 C 1.46922 * 120.63235 * 6.11942 * 10 8 7 12 12 C 1.53194 * 108.77908 * 233.58611 * 11 10 8 13 13 C 1.53038 * 109.31300 * 305.36845 * 12 11 10 14 14 C 1.52998 * 109.46008 * 181.38457 * 13 12 11 15 15 H 1.08995 * 109.87693 * 180.37714 * 14 13 12 16 16 C 1.54324 * 109.88123 * 301.55596 * 14 13 12 17 17 C 1.55155 * 102.94473 * 141.60836 * 16 14 13 18 18 C 1.54909 * 101.58397 * 324.50013 * 17 16 14 19 19 N 1.47023 * 109.88567 * 59.36107 * 14 13 12 20 20 C 1.36934 * 125.64678 * 61.67460 * 19 14 13 21 21 H 1.08003 * 120.00280 * 356.09639 * 20 19 14 22 22 C 1.38808 * 120.00431 * 176.08924 * 20 19 14 23 23 N 1.31623 * 119.99834 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00446 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47286 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.46869 * 120.00317 * 24 22 20 27 27 H 1.48502 * 109.47268 * 240.00061 * 24 22 20 28 28 C 1.53041 * 109.54052 * 61.36331 * 13 12 11 29 29 C 1.46930 * 120.63086 * 186.10311 * 10 8 7 30 30 H 1.09001 * 109.47265 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47412 * 300.00552 * 1 2 3 32 32 H 1.09000 * 109.46544 * 60.00182 * 1 2 3 33 33 H 1.08997 * 109.47412 * 239.99448 * 2 1 3 34 34 H 1.09000 * 109.46544 * 119.99818 * 2 1 3 35 35 H 1.08004 * 125.38159 * 180.02562 * 5 4 3 36 36 H 1.09003 * 109.58339 * 113.80016 * 11 10 8 37 37 H 1.08999 * 109.58730 * 353.37489 * 11 10 8 38 38 H 1.08998 * 109.49899 * 185.40858 * 12 11 10 39 39 H 1.09004 * 109.49440 * 65.32055 * 12 11 10 40 40 H 1.09005 * 109.46053 * 301.34160 * 13 12 11 41 41 H 1.09005 * 110.72072 * 259.97340 * 16 14 13 42 42 H 1.08998 * 110.71953 * 23.24551 * 16 14 13 43 43 H 1.09003 * 111.00898 * 206.42120 * 17 16 14 44 44 H 1.09001 * 111.03667 * 82.58613 * 17 16 14 45 45 H 1.09000 * 110.36367 * 278.17253 * 18 17 16 46 46 H 1.08995 * 110.46532 * 155.89280 * 18 17 16 47 47 H 0.96998 * 120.00034 * 179.97438 * 23 22 20 48 48 H 1.08998 * 109.49543 * 58.58317 * 28 13 12 49 49 H 1.08993 * 109.49491 * 178.64931 * 28 13 12 50 50 H 1.09003 * 109.58375 * 6.62561 * 29 10 8 51 51 H 1.08997 * 109.58287 * 246.19861 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 8 2.2996 2.1738 -1.0788 5 6 2.7240 3.3736 -0.6580 6 7 2.7255 3.3959 0.6412 7 6 2.3021 2.1845 1.0936 8 6 2.1570 1.7780 2.5032 9 8 1.8770 0.6269 2.7783 10 7 2.3346 2.6820 3.4869 11 6 2.5408 4.1018 3.1706 12 6 3.8231 4.5794 3.8594 13 6 3.7368 4.2751 5.3567 14 6 5.0012 4.7819 6.0535 15 1 4.9498 4.5626 7.1199 16 6 6.2458 4.1106 5.4356 17 6 7.2873 5.2604 5.4163 18 6 6.3912 6.4868 5.1120 19 7 5.1392 6.2310 5.8472 20 6 4.2521 7.1852 6.2688 21 1 3.3295 6.8912 6.7470 22 6 4.5387 8.5304 6.0816 23 7 5.6630 8.8888 5.4985 24 14 3.3289 9.8321 6.6573 25 1 2.1513 9.1736 7.2776 26 1 3.9869 10.7119 7.6565 27 1 2.8873 10.6456 5.4961 28 6 3.6102 2.7644 5.5656 29 6 2.3255 2.2663 4.8962 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3632 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.0144 4.1940 -1.2977 36 1 1.6931 4.6836 3.5327 37 1 2.6376 4.2256 2.0920 38 1 3.9368 5.6534 3.7122 39 1 4.6808 4.0604 3.4315 40 1 2.8647 4.7745 5.7791 41 1 6.5911 3.2879 6.0618 42 1 6.0349 3.7643 4.4239 43 1 8.0228 5.1082 4.6264 44 1 7.7744 5.3635 6.3860 45 1 6.1952 6.5571 4.0421 46 1 6.8622 7.4016 5.4716 47 1 5.8631 9.8289 5.3674 48 1 4.4699 2.2625 5.1216 49 1 3.5730 2.5466 6.6329 50 1 2.2802 1.1788 4.9561 51 1 1.4603 2.6984 5.3989 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001004381248.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:00:40 Heat of formation + Delta-G solvation = 20.807154 kcal Electronic energy + Delta-G solvation = -32288.241980 eV Core-core repulsion = 28190.297466 eV Total energy + Delta-G solvation = -4097.944514 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.68843 -39.98695 -38.35886 -36.34683 -35.16271 -34.36410 -32.95337 -32.05053 -30.73201 -29.50353 -29.28883 -27.59184 -25.21394 -24.56076 -23.99871 -23.12106 -23.02461 -21.78946 -20.95904 -20.06837 -19.54378 -18.41081 -17.47128 -17.07947 -16.71881 -16.36814 -15.86854 -15.30466 -15.06417 -14.87656 -14.70946 -14.55537 -13.95908 -13.84430 -13.78301 -13.57976 -13.16366 -13.06284 -12.87193 -12.65459 -12.13675 -11.97552 -11.92100 -11.84911 -11.58228 -11.48457 -11.40140 -11.17728 -11.01536 -10.90958 -10.78561 -10.66498 -10.23262 -10.09630 -9.97735 -9.84807 -9.69516 -9.51385 -9.38309 -9.19507 -9.14063 -8.62323 -8.38265 -6.76100 -5.57462 -3.01553 0.92300 1.86126 2.33434 3.06171 3.25379 3.41127 3.47248 3.49135 3.85045 4.34086 4.51982 4.53419 4.78351 4.90885 5.02646 5.15573 5.21912 5.27912 5.37798 5.48288 5.52072 5.52559 5.55994 5.59015 5.61307 5.76378 5.78840 5.82232 5.86764 5.90637 5.92436 6.00602 6.05174 6.24917 6.29187 6.32856 6.44650 6.50390 6.56942 6.68372 6.71997 6.84241 6.86801 7.02778 7.11383 7.22229 7.25568 7.57952 7.59399 7.71767 7.94572 8.16987 8.46643 9.28956 9.90460 10.56071 11.42890 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014090 B = 0.003017 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.703058 B = 9278.779012 C = 9677.479146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.047 4.047 3 C 0.041 3.959 4 O -0.199 6.199 5 C 0.176 3.824 6 N -0.453 5.453 7 C -0.066 4.066 8 C 0.598 3.402 9 O -0.548 6.548 10 N -0.584 5.584 11 C 0.062 3.938 12 C -0.109 4.109 13 C -0.096 4.096 14 C 0.167 3.833 15 H 0.030 0.970 16 C -0.129 4.129 17 C -0.147 4.147 18 C 0.145 3.855 19 N -0.592 5.592 20 C -0.212 4.212 21 H 0.075 0.925 22 C -0.013 4.013 23 N -0.921 5.921 24 Si 0.909 3.091 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.292 1.292 28 C -0.127 4.127 29 C 0.113 3.887 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.084 0.916 34 H 0.119 0.881 35 H 0.256 0.744 36 H 0.057 0.943 37 H 0.145 0.855 38 H 0.090 0.910 39 H 0.056 0.944 40 H 0.066 0.934 41 H 0.052 0.948 42 H 0.065 0.935 43 H 0.052 0.948 44 H 0.055 0.945 45 H 0.007 0.993 46 H 0.112 0.888 47 H 0.249 0.751 48 H 0.063 0.937 49 H 0.070 0.930 50 H 0.086 0.914 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.057 -15.677 -12.047 20.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.084 4.084 3 C -0.016 4.016 4 O -0.085 6.085 5 C -0.052 4.052 6 N -0.182 5.182 7 C -0.185 4.185 8 C 0.386 3.614 9 O -0.427 6.427 10 N -0.315 5.315 11 C -0.060 4.060 12 C -0.147 4.147 13 C -0.117 4.117 14 C 0.060 3.940 15 H 0.048 0.952 16 C -0.166 4.166 17 C -0.185 4.185 18 C 0.021 3.979 19 N -0.316 5.316 20 C -0.340 4.340 21 H 0.093 0.907 22 C -0.208 4.208 23 N -0.570 5.570 24 Si 0.741 3.259 25 H -0.207 1.207 26 H -0.219 1.219 27 H -0.219 1.219 28 C -0.166 4.166 29 C -0.009 4.009 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.102 0.898 34 H 0.137 0.863 35 H 0.271 0.729 36 H 0.075 0.925 37 H 0.162 0.838 38 H 0.108 0.892 39 H 0.074 0.926 40 H 0.084 0.916 41 H 0.071 0.929 42 H 0.083 0.917 43 H 0.071 0.929 44 H 0.074 0.926 45 H 0.025 0.975 46 H 0.130 0.870 47 H 0.060 0.940 48 H 0.082 0.918 49 H 0.088 0.912 50 H 0.104 0.896 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.058 -15.497 -11.517 20.235 hybrid contribution -0.705 0.606 -0.133 0.939 sum -6.763 -14.890 -11.649 20.079 Atomic orbital electron populations 1.21708 0.93176 1.02845 1.02424 1.20397 0.96989 0.85497 1.05541 1.23754 0.98974 0.95573 0.83288 1.84371 1.63646 1.24230 1.36277 1.28279 0.98399 0.86856 0.91630 1.70447 1.17881 1.20552 1.09325 1.21519 1.10136 0.91235 0.95637 1.16772 0.77290 0.84732 0.82628 1.90730 1.50381 1.18630 1.83008 1.47972 1.68638 1.09060 1.05797 1.23059 0.98297 0.78294 1.06372 1.21765 0.95616 1.02814 0.94512 1.21624 1.00776 0.92852 0.96430 1.20894 0.91676 0.85766 0.95706 0.95196 1.22674 0.96427 0.97250 1.00282 1.22975 0.97469 0.97990 1.00090 1.22074 0.85598 0.96434 0.93843 1.44529 1.23038 0.99152 1.64869 1.19062 0.98185 0.85618 1.31153 0.90688 1.24747 0.97669 0.96900 1.01467 1.69738 1.23646 1.14922 1.48721 0.86065 0.80038 0.81957 0.77876 1.20656 1.21931 1.21914 1.21974 0.96852 0.97634 1.00103 1.21673 0.98498 1.00784 0.79963 0.91062 0.91880 0.92615 0.89781 0.86287 0.72852 0.92494 0.83849 0.89205 0.92574 0.91573 0.92943 0.91667 0.92925 0.92584 0.97529 0.87032 0.93959 0.91833 0.91167 0.89562 0.91623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.89 37.16 0.37 -0.81 16 2 C -0.05 -0.43 6.00 -27.89 -0.17 -0.60 16 3 C 0.04 0.46 6.69 -35.08 -0.23 0.23 16 4 O -0.20 -1.98 10.73 6.53 0.07 -1.91 16 5 C 0.18 1.61 13.19 51.96 0.69 2.29 16 6 N -0.45 -5.83 7.74 -11.48 -0.09 -5.92 16 7 C -0.07 -0.90 6.72 -83.02 -0.56 -1.46 16 8 C 0.60 9.24 7.68 -12.52 -0.10 9.14 16 9 O -0.55 -8.94 14.22 5.26 0.07 -8.86 16 10 N -0.58 -8.99 2.97 -174.03 -0.52 -9.51 16 11 C 0.06 0.98 6.33 -3.71 -0.02 0.96 16 12 C -0.11 -1.95 4.92 -26.61 -0.13 -2.08 16 13 C -0.10 -1.71 1.92 -90.58 -0.17 -1.88 16 14 C 0.17 3.37 2.94 -66.95 -0.20 3.17 16 15 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 16 C -0.13 -2.31 5.24 -24.90 -0.13 -2.44 16 17 C -0.15 -2.86 7.08 -24.58 -0.17 -3.04 16 18 C 0.15 3.49 6.05 -2.53 -0.02 3.47 16 19 N -0.59 -14.47 2.34 -162.58 -0.38 -14.85 16 20 C -0.21 -5.67 9.86 -15.06 -0.15 -5.82 16 21 H 0.08 1.98 7.73 -52.48 -0.41 1.57 16 22 C -0.01 -0.35 5.48 -17.43 -0.10 -0.45 16 23 N -0.92 -26.40 10.03 55.49 0.56 -25.84 16 24 Si 0.91 21.91 29.55 -169.99 -5.02 16.89 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 26 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 27 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 28 C -0.13 -1.88 5.12 -26.61 -0.14 -2.02 16 29 C 0.11 1.62 6.41 -3.71 -0.02 1.60 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.12 1.25 6.37 -51.93 -0.33 0.92 16 35 H 0.26 1.04 8.06 -52.48 -0.42 0.62 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.15 2.24 3.67 -76.92 -0.28 1.96 16 38 H 0.09 1.91 7.57 -51.93 -0.39 1.52 16 39 H 0.06 1.02 6.06 -51.93 -0.31 0.70 16 40 H 0.07 1.29 7.91 -51.93 -0.41 0.88 16 41 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.06 1.15 5.49 -51.93 -0.28 0.86 16 43 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 46 H 0.11 3.05 5.62 -51.93 -0.29 2.76 16 47 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 48 H 0.06 0.96 7.20 -51.93 -0.37 0.59 16 49 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 50 H 0.09 1.21 7.04 -51.93 -0.37 0.85 16 51 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 389.17 15.07 5.86 5.86 Total: -1.00 -31.41 389.17 -8.78 -40.19 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -8.08 Total: 3.68 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: -1.25 Total: 0.27 kcal Atomic # 7 Polarization: -55.68 SS G_CDS: -0.43 Total: -56.11 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.14 Total: -10.78 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.41 -8.78 -40.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001004381248.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.999 kcal (2) G-P(sol) polarization free energy of solvation -31.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds