Wall clock time and date at job start Wed Apr 1 2020 06:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50693 * 109.47188 * 2 1 4 4 O 1.34252 * 126.52658 * 269.95038 * 3 2 1 5 5 C 1.34048 * 108.22989 * 180.02562 * 4 3 2 6 6 N 1.29936 * 109.24322 * 359.75404 * 5 4 3 7 7 C 1.36068 * 108.47283 * 0.39785 * 6 5 4 8 8 C 1.47418 * 126.44491 * 179.86411 * 7 6 5 9 9 O 1.21616 * 119.99784 * 186.27409 * 8 7 6 10 10 N 1.34775 * 120.00048 * 6.27050 * 8 7 6 11 11 C 1.46922 * 120.63235 * 6.11942 * 10 8 7 12 12 C 1.53194 * 108.77908 * 233.58611 * 11 10 8 13 13 C 1.53038 * 109.31300 * 305.36845 * 12 11 10 14 14 C 1.52998 * 109.46008 * 181.38457 * 13 12 11 15 15 H 1.08995 * 109.87693 * 180.37714 * 14 13 12 16 16 C 1.54324 * 109.88123 * 301.55596 * 14 13 12 17 17 C 1.55155 * 102.94473 * 141.60836 * 16 14 13 18 18 C 1.54909 * 101.58397 * 324.50013 * 17 16 14 19 19 N 1.47023 * 109.88567 * 59.36107 * 14 13 12 20 20 C 1.36934 * 125.64678 * 61.67460 * 19 14 13 21 21 H 1.08003 * 120.00280 * 356.09639 * 20 19 14 22 22 C 1.38808 * 120.00431 * 176.08924 * 20 19 14 23 23 N 1.31623 * 119.99834 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00446 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47286 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.46869 * 120.00317 * 24 22 20 27 27 H 1.48502 * 109.47268 * 240.00061 * 24 22 20 28 28 C 1.53041 * 109.54052 * 61.36331 * 13 12 11 29 29 C 1.46930 * 120.63086 * 186.10311 * 10 8 7 30 30 H 1.09001 * 109.47265 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47412 * 300.00552 * 1 2 3 32 32 H 1.09000 * 109.46544 * 60.00182 * 1 2 3 33 33 H 1.08997 * 109.47412 * 239.99448 * 2 1 3 34 34 H 1.09000 * 109.46544 * 119.99818 * 2 1 3 35 35 H 1.08004 * 125.38159 * 180.02562 * 5 4 3 36 36 H 1.09003 * 109.58339 * 113.80016 * 11 10 8 37 37 H 1.08999 * 109.58730 * 353.37489 * 11 10 8 38 38 H 1.08998 * 109.49899 * 185.40858 * 12 11 10 39 39 H 1.09004 * 109.49440 * 65.32055 * 12 11 10 40 40 H 1.09005 * 109.46053 * 301.34160 * 13 12 11 41 41 H 1.09005 * 110.72072 * 259.97340 * 16 14 13 42 42 H 1.08998 * 110.71953 * 23.24551 * 16 14 13 43 43 H 1.09003 * 111.00898 * 206.42120 * 17 16 14 44 44 H 1.09001 * 111.03667 * 82.58613 * 17 16 14 45 45 H 1.09000 * 110.36367 * 278.17253 * 18 17 16 46 46 H 1.08995 * 110.46532 * 155.89280 * 18 17 16 47 47 H 0.96998 * 120.00034 * 179.97438 * 23 22 20 48 48 H 1.08998 * 109.49543 * 58.58317 * 28 13 12 49 49 H 1.08993 * 109.49491 * 178.64931 * 28 13 12 50 50 H 1.09003 * 109.58375 * 6.62561 * 29 10 8 51 51 H 1.08997 * 109.58287 * 246.19861 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 8 2.2996 2.1738 -1.0788 5 6 2.7240 3.3736 -0.6580 6 7 2.7255 3.3959 0.6412 7 6 2.3021 2.1845 1.0936 8 6 2.1570 1.7780 2.5032 9 8 1.8770 0.6269 2.7783 10 7 2.3346 2.6820 3.4869 11 6 2.5408 4.1018 3.1706 12 6 3.8231 4.5794 3.8594 13 6 3.7368 4.2751 5.3567 14 6 5.0012 4.7819 6.0535 15 1 4.9498 4.5626 7.1199 16 6 6.2458 4.1106 5.4356 17 6 7.2873 5.2604 5.4163 18 6 6.3912 6.4868 5.1120 19 7 5.1392 6.2310 5.8472 20 6 4.2521 7.1852 6.2688 21 1 3.3295 6.8912 6.7470 22 6 4.5387 8.5304 6.0816 23 7 5.6630 8.8888 5.4985 24 14 3.3289 9.8321 6.6573 25 1 2.1513 9.1736 7.2776 26 1 3.9869 10.7119 7.6565 27 1 2.8873 10.6456 5.4961 28 6 3.6102 2.7644 5.5656 29 6 2.3255 2.2663 4.8962 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3632 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.0144 4.1940 -1.2977 36 1 1.6931 4.6836 3.5327 37 1 2.6376 4.2256 2.0920 38 1 3.9368 5.6534 3.7122 39 1 4.6808 4.0604 3.4315 40 1 2.8647 4.7745 5.7791 41 1 6.5911 3.2879 6.0618 42 1 6.0349 3.7643 4.4239 43 1 8.0228 5.1082 4.6264 44 1 7.7744 5.3635 6.3860 45 1 6.1952 6.5571 4.0421 46 1 6.8622 7.4016 5.4716 47 1 5.8631 9.8289 5.3674 48 1 4.4699 2.2625 5.1216 49 1 3.5730 2.5466 6.6329 50 1 2.2802 1.1788 4.9561 51 1 1.4603 2.6984 5.3989 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001004381248.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:00:39 Heat of formation + Delta-G solvation = 2.509414 kcal Electronic energy + Delta-G solvation = -32289.035429 eV Core-core repulsion = 28190.297466 eV Total energy + Delta-G solvation = -4098.737964 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -44.52270 -41.24210 -39.84762 -37.76319 -36.07651 -35.13171 -34.68933 -33.63558 -32.02579 -31.18437 -30.37475 -29.08639 -26.64520 -26.14798 -24.98444 -24.29325 -24.20611 -22.90257 -22.21015 -21.68912 -20.83367 -19.80681 -18.78250 -18.34720 -17.93556 -17.51840 -17.06174 -16.77787 -16.33990 -16.13117 -15.85449 -15.69751 -15.56622 -15.29465 -15.01509 -14.55379 -14.47773 -14.29122 -14.04170 -13.72941 -13.69309 -13.55500 -13.34321 -13.09218 -12.86310 -12.78976 -12.67899 -12.59456 -12.46608 -12.37315 -12.09441 -11.97820 -11.93425 -11.75893 -11.51127 -11.33504 -11.25615 -11.16910 -11.00529 -10.70207 -10.44666 -10.06743 -9.61275 -8.76003 -7.66442 -5.11715 0.02967 0.99681 1.47164 1.47777 1.54429 1.57195 1.96763 2.17441 2.53236 3.02592 3.39231 3.52414 3.60159 3.67198 3.89319 3.97404 4.07028 4.12711 4.19413 4.23417 4.27052 4.28470 4.31328 4.35470 4.43472 4.52712 4.59029 4.64113 4.77700 4.79433 4.83318 4.88543 4.91281 4.94494 5.03639 5.07666 5.10961 5.12221 5.18921 5.24011 5.26002 5.31894 5.49802 5.55743 5.59287 5.63306 5.74499 5.79830 5.93017 6.26197 6.43430 6.50483 7.01572 7.20787 7.89756 8.54123 9.32132 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014090 B = 0.003017 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.703058 B = 9278.779012 C = 9677.479146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.047 4.047 3 C 0.050 3.950 4 O -0.193 6.193 5 C 0.199 3.801 6 N -0.493 5.493 7 C -0.100 4.100 8 C 0.595 3.405 9 O -0.562 6.562 10 N -0.589 5.589 11 C 0.071 3.929 12 C -0.094 4.094 13 C -0.087 4.087 14 C 0.159 3.841 15 H 0.027 0.973 16 C -0.115 4.115 17 C -0.136 4.136 18 C 0.148 3.852 19 N -0.607 5.607 20 C -0.214 4.214 21 H 0.075 0.925 22 C -0.068 4.068 23 N -0.948 5.948 24 Si 0.969 3.031 25 H -0.270 1.270 26 H -0.295 1.295 27 H -0.295 1.295 28 C -0.115 4.115 29 C 0.113 3.887 30 H 0.089 0.911 31 H 0.039 0.961 32 H 0.064 0.936 33 H 0.111 0.889 34 H 0.104 0.896 35 H 0.301 0.699 36 H 0.048 0.952 37 H 0.154 0.846 38 H 0.049 0.951 39 H 0.054 0.946 40 H 0.045 0.955 41 H 0.082 0.918 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.057 0.943 45 H -0.017 1.017 46 H 0.077 0.923 47 H 0.243 0.757 48 H 0.067 0.933 49 H 0.087 0.913 50 H 0.093 0.907 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.537 -17.710 -13.222 23.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.084 4.084 3 C -0.007 4.007 4 O -0.080 6.080 5 C -0.028 4.028 6 N -0.222 5.222 7 C -0.218 4.218 8 C 0.384 3.616 9 O -0.442 6.442 10 N -0.320 5.320 11 C -0.052 4.052 12 C -0.132 4.132 13 C -0.108 4.108 14 C 0.053 3.947 15 H 0.044 0.956 16 C -0.153 4.153 17 C -0.174 4.174 18 C 0.023 3.977 19 N -0.331 5.331 20 C -0.344 4.344 21 H 0.093 0.907 22 C -0.260 4.260 23 N -0.599 5.599 24 Si 0.799 3.201 25 H -0.195 1.195 26 H -0.223 1.223 27 H -0.223 1.223 28 C -0.153 4.153 29 C -0.009 4.009 30 H 0.108 0.892 31 H 0.058 0.942 32 H 0.083 0.917 33 H 0.129 0.871 34 H 0.122 0.878 35 H 0.316 0.684 36 H 0.066 0.934 37 H 0.170 0.830 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.101 0.899 42 H 0.089 0.911 43 H 0.094 0.906 44 H 0.076 0.924 45 H 0.001 0.999 46 H 0.095 0.905 47 H 0.053 0.947 48 H 0.085 0.915 49 H 0.106 0.894 50 H 0.111 0.889 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.550 -17.571 -12.672 22.632 hybrid contribution -0.558 1.217 0.154 1.347 sum -7.108 -16.354 -12.518 21.787 Atomic orbital electron populations 1.21683 0.92413 1.03885 1.01699 1.20491 0.97509 0.84325 1.06109 1.24090 0.97491 0.96149 0.82967 1.84417 1.63534 1.24437 1.35589 1.29267 0.95470 0.87077 0.91025 1.70248 1.19874 1.20756 1.11290 1.21392 1.12678 0.92451 0.95268 1.17042 0.76691 0.84471 0.83427 1.90710 1.51002 1.19008 1.83510 1.47986 1.68997 1.08650 1.06322 1.22927 0.96710 0.78731 1.06798 1.21536 0.96678 1.00097 0.94886 1.21463 0.98602 0.94958 0.95791 1.21123 0.93951 0.83721 0.95926 0.95571 1.22619 0.94464 0.97194 1.01017 1.22848 0.97461 0.96198 1.00908 1.21835 0.86323 0.97334 0.92229 1.44728 1.22872 1.00856 1.64638 1.19321 0.98465 0.86420 1.30161 0.90715 1.25471 0.99368 0.98771 1.02426 1.69992 1.25152 1.14592 1.50147 0.85125 0.78479 0.79451 0.77041 1.19472 1.22253 1.22252 1.21867 0.97312 0.94780 1.01368 1.21709 0.98376 1.01161 0.79613 0.89191 0.94169 0.91680 0.87082 0.87767 0.68379 0.93401 0.83006 0.93234 0.92701 0.93648 0.89925 0.91142 0.90617 0.92418 0.99888 0.90497 0.94700 0.91457 0.89424 0.88872 0.91147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.89 71.98 0.71 -1.32 16 2 C -0.05 -0.77 6.00 29.85 0.18 -0.59 16 3 C 0.05 1.06 6.69 25.18 0.17 1.23 16 4 O -0.19 -3.35 10.73 0.45 0.00 -3.34 16 5 C 0.20 3.13 13.19 130.52 1.72 4.86 16 6 N -0.49 -12.11 7.74 -305.15 -2.36 -14.47 16 7 C -0.10 -2.66 6.72 40.41 0.27 -2.39 16 8 C 0.59 18.09 7.68 86.66 0.67 18.75 16 9 O -0.56 -18.01 14.22 -4.08 -0.06 -18.07 16 10 N -0.59 -17.89 2.97 -822.77 -2.45 -20.33 16 11 C 0.07 2.28 6.33 86.36 0.55 2.82 16 12 C -0.09 -3.41 4.92 30.67 0.15 -3.25 16 13 C -0.09 -3.10 1.92 -10.77 -0.02 -3.12 16 14 C 0.16 6.35 2.94 45.34 0.13 6.48 16 15 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 16 C -0.12 -3.92 5.24 31.78 0.17 -3.76 16 17 C -0.14 -5.17 7.08 31.99 0.23 -4.94 16 18 C 0.15 7.31 6.05 86.85 0.53 7.83 16 19 N -0.61 -30.34 2.34 -668.28 -1.56 -31.90 16 20 C -0.21 -11.78 9.86 84.03 0.83 -10.95 16 21 H 0.08 4.02 7.73 -2.91 -0.02 3.99 16 22 C -0.07 -3.87 5.48 84.86 0.47 -3.40 16 23 N -0.95 -56.39 10.03 21.65 0.22 -56.17 16 24 Si 0.97 46.09 29.55 68.60 2.03 48.12 16 25 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 26 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 27 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 28 C -0.11 -3.22 5.12 30.67 0.16 -3.06 16 29 C 0.11 3.13 6.41 86.36 0.55 3.68 16 30 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.10 2.07 6.37 -2.39 -0.02 2.05 16 35 H 0.30 1.31 8.06 -2.91 -0.02 1.29 16 36 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.15 4.77 3.67 -51.72 -0.19 4.58 16 38 H 0.05 2.20 7.57 -2.39 -0.02 2.18 16 39 H 0.05 1.98 6.06 -2.38 -0.01 1.97 16 40 H 0.04 1.79 7.91 -2.38 -0.02 1.77 16 41 H 0.08 2.37 8.14 -2.38 -0.02 2.35 16 42 H 0.07 2.35 5.49 -2.39 -0.01 2.33 16 43 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 44 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 45 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 46 H 0.08 4.39 5.62 -2.39 -0.01 4.37 16 47 H 0.24 14.12 8.31 -92.71 -0.77 13.35 16 48 H 0.07 1.87 7.20 -2.39 -0.02 1.85 16 49 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 50 H 0.09 2.48 7.04 -2.39 -0.02 2.47 16 51 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -70.91 389.17 4.03 -66.88 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: 0.75 Total: 20.42 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: 7.45 Total: 8.87 kcal Atomic # 7 Polarization: -116.72 SS G_CDS: -6.15 Total: -122.88 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: -0.05 Total: -21.41 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -70.91 4.03 -66.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001004381248.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.394 kcal (2) G-P(sol) polarization free energy of solvation -70.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds