Wall clock time and date at job start Wed Apr 1 2020 05:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50702 * 109.47095 * 2 1 4 4 C 1.35315 * 126.66724 * 89.99742 * 3 2 1 5 5 C 1.42271 * 103.91938 * 180.02562 * 4 3 2 6 6 C 1.48328 * 126.93652 * 179.97438 * 5 4 3 7 7 O 1.21490 * 120.00223 * 352.30562 * 6 5 4 8 8 N 1.34780 * 119.99893 * 172.29811 * 6 5 4 9 9 C 1.46918 * 120.63321 * 3.96594 * 8 6 5 10 10 C 1.53193 * 108.77751 * 233.62476 * 9 8 6 11 11 C 1.53039 * 109.31155 * 305.36303 * 10 9 8 12 12 C 1.52998 * 109.45917 * 181.38326 * 11 10 9 13 13 H 1.09003 * 109.99493 * 178.80538 * 12 11 10 14 14 C 1.54320 * 109.77545 * 299.96217 * 12 11 10 15 15 C 1.55152 * 102.86258 * 141.88473 * 14 12 11 16 16 C 1.54903 * 101.58327 * 324.30515 * 15 14 12 17 17 N 1.47023 * 109.88224 * 57.71116 * 12 11 10 18 18 C 1.36934 * 125.64823 * 61.68113 * 17 12 11 19 19 H 1.07993 * 120.00103 * 11.77894 * 18 17 12 20 20 C 1.38809 * 119.99835 * 192.06190 * 18 17 12 21 21 N 1.31624 * 120.00161 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 120.00124 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46836 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47218 * 119.99509 * 22 20 18 25 25 H 1.48496 * 109.47264 * 240.00081 * 22 20 18 26 26 C 1.53044 * 109.53628 * 61.36355 * 11 10 9 27 27 C 1.46928 * 120.62855 * 183.97902 * 8 6 5 28 28 N 1.30981 * 106.12581 * 0.26012 * 5 4 3 29 29 O 1.20908 * 111.44061 * 359.53726 * 28 5 4 30 30 H 1.09005 * 109.47021 * 60.00295 * 1 2 3 31 31 H 1.09004 * 109.46912 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47246 * 300.00530 * 1 2 3 33 33 H 1.08996 * 109.47246 * 239.99470 * 2 1 3 34 34 H 1.08996 * 109.46725 * 119.99727 * 2 1 3 35 35 H 1.07992 * 128.03548 * 359.97438 * 4 3 2 36 36 H 1.09003 * 109.59310 * 113.83602 * 9 8 6 37 37 H 1.09002 * 109.58744 * 353.41097 * 9 8 6 38 38 H 1.09001 * 109.49770 * 185.40747 * 10 9 8 39 39 H 1.08998 * 109.51947 * 65.33004 * 10 9 8 40 40 H 1.08998 * 109.46129 * 301.35497 * 11 10 9 41 41 H 1.09004 * 110.92482 * 23.46706 * 14 12 11 42 42 H 1.09001 * 110.58855 * 260.14701 * 14 12 11 43 43 H 1.08998 * 111.00261 * 206.22791 * 15 14 12 44 44 H 1.09003 * 111.03289 * 82.39363 * 15 14 12 45 45 H 1.09000 * 110.36446 * 278.16772 * 16 15 14 46 46 H 1.09005 * 110.45886 * 155.89707 * 16 15 14 47 47 H 0.96998 * 120.00352 * 180.02562 * 21 20 18 48 48 H 1.08997 * 109.49626 * 58.58496 * 26 11 10 49 49 H 1.09000 * 109.49516 * 178.68566 * 26 11 10 50 50 H 1.09002 * 109.58457 * 246.16211 * 27 8 6 51 51 H 1.08995 * 109.58847 * 6.58953 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3017 2.1827 1.0854 5 6 2.7385 3.4199 0.5353 6 6 3.1645 4.6274 1.2840 7 8 3.0308 4.6726 2.4906 8 7 3.7001 5.6744 0.6256 9 6 3.7889 5.6705 -0.8409 10 6 5.2393 5.9490 -1.2478 11 6 5.7076 7.2506 -0.5933 12 6 7.1446 7.5500 -1.0250 13 1 7.4798 8.4870 -0.5803 14 6 8.0721 6.3968 -0.5877 15 6 9.0561 6.2735 -1.7809 16 6 8.1296 6.5879 -2.9818 17 7 7.2183 7.6376 -2.4908 18 6 6.5550 8.5473 -3.2702 19 1 6.0666 9.3953 -2.8135 20 6 6.5055 8.3764 -4.6469 21 7 7.0965 7.3401 -5.2031 22 14 5.6001 9.6170 -5.7102 23 1 5.0255 10.6814 -4.8486 24 1 6.5476 10.2224 -6.6802 25 1 4.5070 8.9332 -6.4468 26 6 5.6522 7.1066 0.9294 27 6 4.2065 6.8413 1.3609 28 7 2.6825 3.2795 -0.7658 29 8 2.2986 2.1754 -1.0751 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.2063 1.9142 2.1270 36 1 3.1398 6.4457 -1.2484 37 1 3.4827 4.6967 -1.2229 38 1 5.3011 6.0440 -2.3319 39 1 5.8743 5.1268 -0.9179 40 1 5.0572 8.0681 -0.9044 41 1 7.5089 5.4730 -0.4551 42 1 8.6051 6.6591 0.3263 43 1 9.4589 5.2632 -1.8522 44 1 9.8584 7.0073 -1.7038 45 1 7.5661 5.7001 -3.2688 46 1 8.7122 6.9560 -3.8264 47 1 7.0623 7.2208 -6.1651 48 1 6.2830 6.2735 1.2391 49 1 6.0080 8.0257 1.3949 50 1 3.5915 7.7119 1.1330 51 1 4.1759 6.6400 2.4317 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001004595062.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:37:40 Heat of formation + Delta-G solvation = 40.741518 kcal Electronic energy + Delta-G solvation = -31983.818070 eV Core-core repulsion = 27886.737975 eV Total energy + Delta-G solvation = -4097.080095 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -46.20858 -41.43678 -39.93371 -37.84170 -35.85420 -35.29400 -34.63850 -33.67705 -32.13806 -31.20139 -31.10475 -29.32193 -26.77774 -26.34934 -25.11083 -24.87307 -24.09237 -23.38873 -22.39174 -21.71439 -20.70909 -19.61738 -18.92950 -18.61231 -18.52963 -17.89520 -17.19126 -16.84688 -16.44138 -16.25568 -15.73382 -15.65579 -15.39685 -15.30901 -14.98819 -14.59346 -14.53940 -14.32524 -14.08936 -13.88182 -13.66195 -13.52745 -13.36200 -13.08583 -12.94813 -12.82422 -12.72765 -12.65421 -12.44995 -12.11977 -11.99275 -11.89795 -11.83948 -11.70463 -11.60140 -11.52744 -11.43233 -11.21525 -11.15977 -10.87607 -10.62917 -10.48676 -9.84902 -8.73977 -7.80280 -5.14866 -0.02839 0.63198 1.44721 1.45903 1.54846 1.60484 1.93560 2.00532 2.51312 2.73990 3.31589 3.37269 3.63019 3.71181 3.86873 3.89402 3.93623 4.11158 4.12240 4.14727 4.19679 4.25049 4.32530 4.33923 4.35446 4.43812 4.54571 4.60695 4.70063 4.76304 4.83985 4.85559 4.91256 4.97361 4.99906 5.05807 5.06948 5.07421 5.14871 5.17459 5.23710 5.27871 5.40318 5.47778 5.53691 5.58901 5.66489 5.70869 5.82829 6.09404 6.30152 6.71605 7.04540 7.16576 7.85815 8.53130 9.30157 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011571 B = 0.003096 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2419.188791 B = 9041.098768 C = 9914.075069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.041 4.041 3 C -0.010 4.010 4 C -0.190 4.190 5 C -0.042 4.042 6 C 0.593 3.407 7 O -0.556 6.556 8 N -0.588 5.588 9 C 0.084 3.916 10 C -0.099 4.099 11 C -0.085 4.085 12 C 0.159 3.841 13 H 0.033 0.967 14 C -0.115 4.115 15 C -0.138 4.138 16 C 0.179 3.821 17 N -0.608 5.608 18 C -0.220 4.220 19 H 0.074 0.926 20 C -0.062 4.062 21 N -0.947 5.947 22 Si 0.964 3.036 23 H -0.268 1.268 24 H -0.295 1.295 25 H -0.296 1.296 26 C -0.116 4.116 27 C 0.112 3.888 28 N -0.348 5.348 29 O 0.113 5.887 30 H 0.051 0.949 31 H 0.091 0.909 32 H 0.057 0.943 33 H 0.106 0.894 34 H 0.124 0.876 35 H 0.197 0.803 36 H 0.063 0.937 37 H 0.123 0.877 38 H 0.052 0.948 39 H 0.054 0.946 40 H 0.049 0.951 41 H 0.068 0.932 42 H 0.087 0.913 43 H 0.076 0.924 44 H 0.062 0.938 45 H -0.008 1.008 46 H 0.034 0.966 47 H 0.244 0.756 48 H 0.069 0.931 49 H 0.094 0.906 50 H 0.077 0.923 51 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.532 -14.618 14.610 22.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.079 4.079 3 C -0.074 4.074 4 C -0.213 4.213 5 C -0.199 4.199 6 C 0.380 3.620 7 O -0.434 6.434 8 N -0.319 5.319 9 C -0.038 4.038 10 C -0.137 4.137 11 C -0.105 4.105 12 C 0.052 3.948 13 H 0.051 0.949 14 C -0.153 4.153 15 C -0.177 4.177 16 C 0.053 3.947 17 N -0.332 5.332 18 C -0.350 4.350 19 H 0.092 0.908 20 C -0.255 4.255 21 N -0.596 5.596 22 Si 0.794 3.206 23 H -0.193 1.193 24 H -0.223 1.223 25 H -0.223 1.223 26 C -0.154 4.154 27 C -0.009 4.009 28 N -0.052 5.052 29 O 0.041 5.959 30 H 0.070 0.930 31 H 0.110 0.890 32 H 0.076 0.924 33 H 0.125 0.875 34 H 0.142 0.858 35 H 0.214 0.786 36 H 0.081 0.919 37 H 0.139 0.861 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.086 0.914 42 H 0.106 0.894 43 H 0.094 0.906 44 H 0.081 0.919 45 H 0.010 0.990 46 H 0.053 0.947 47 H 0.053 0.947 48 H 0.088 0.912 49 H 0.113 0.887 50 H 0.095 0.905 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -9.348 -13.654 14.042 21.703 hybrid contribution -0.434 0.743 -0.716 1.119 sum -9.783 -12.911 13.326 20.976 Atomic orbital electron populations 1.21823 0.92798 1.03995 1.02300 1.20458 0.96976 0.83478 1.06994 1.25277 0.99815 0.98159 0.84116 1.22640 1.05353 0.90622 1.02693 1.23556 1.07357 0.98502 0.90456 1.17211 0.77599 0.81318 0.85916 1.90728 1.57287 1.81568 1.13795 1.48109 1.58089 1.17638 1.08105 1.22566 0.97856 1.05244 0.78171 1.21594 0.94260 0.97511 1.00353 1.21438 0.98139 0.96519 0.94452 1.21152 0.93394 0.96169 0.84036 0.94902 1.22615 0.96704 0.98054 0.97884 1.22891 0.97600 1.01050 0.96158 1.21188 0.89995 0.89610 0.93856 1.44698 1.51641 1.35567 1.01296 1.19247 1.25576 1.01484 0.88668 0.90783 1.25515 1.02202 0.99634 0.98158 1.70147 1.49214 1.30924 1.09323 0.85207 0.77773 0.78658 0.78947 1.19264 1.22277 1.22334 1.21905 0.95389 1.03218 0.94901 1.21820 0.95164 0.86645 0.97304 1.73945 1.15556 1.00093 1.15580 1.84794 1.59336 1.17044 1.34737 0.93008 0.89040 0.92382 0.87544 0.85808 0.78585 0.91881 0.86052 0.92911 0.92709 0.93228 0.91376 0.89446 0.90569 0.91907 0.99025 0.94742 0.94701 0.91233 0.88741 0.90462 0.88588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.89 71.98 0.71 -0.35 16 2 C -0.04 -0.31 6.50 29.85 0.19 -0.12 16 3 C -0.01 -0.18 6.73 25.01 0.17 -0.01 16 4 C -0.19 -3.93 10.93 22.60 0.25 -3.68 16 5 C -0.04 -1.17 6.94 42.96 0.30 -0.87 16 6 C 0.59 18.73 7.72 86.93 0.67 19.40 16 7 O -0.56 -19.15 16.39 -3.68 -0.06 -19.21 16 8 N -0.59 -18.06 2.97 -821.78 -2.44 -20.50 16 9 C 0.08 2.80 6.31 86.36 0.55 3.35 16 10 C -0.10 -3.67 4.93 30.67 0.15 -3.52 16 11 C -0.08 -2.95 1.91 -10.77 -0.02 -2.97 16 12 C 0.16 6.15 2.96 45.34 0.13 6.28 16 13 H 0.03 1.28 8.14 -2.39 -0.02 1.27 16 14 C -0.11 -3.77 5.19 31.78 0.17 -3.61 16 15 C -0.14 -5.11 7.08 31.98 0.23 -4.88 16 16 C 0.18 8.76 5.46 86.85 0.47 9.23 16 17 N -0.61 -29.95 2.27 -668.28 -1.51 -31.47 16 18 C -0.22 -12.01 9.86 84.03 0.83 -11.18 16 19 H 0.07 3.94 7.83 -2.91 -0.02 3.92 16 20 C -0.06 -3.50 5.47 84.86 0.46 -3.03 16 21 N -0.95 -56.66 10.48 21.65 0.23 -56.43 16 22 Si 0.96 46.08 29.55 68.60 2.03 48.11 16 23 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 24 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 25 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 26 C -0.12 -3.11 5.09 30.67 0.16 -2.95 16 27 C 0.11 3.02 6.42 86.36 0.55 3.57 16 28 N -0.35 -9.99 8.52 -49.52 -0.42 -10.41 16 29 O 0.11 2.66 11.18 71.85 0.80 3.46 16 30 H 0.05 0.48 8.14 -2.38 -0.02 0.47 16 31 H 0.09 0.29 8.14 -2.38 -0.02 0.27 16 32 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.12 0.40 8.14 -2.39 -0.02 0.38 16 35 H 0.20 3.18 8.06 -2.91 -0.02 3.15 16 36 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.12 4.10 3.79 -43.60 -0.17 3.94 16 38 H 0.05 2.45 7.52 -2.39 -0.02 2.43 16 39 H 0.05 2.01 6.13 -2.39 -0.01 2.00 16 40 H 0.05 1.91 8.05 -2.39 -0.02 1.89 16 41 H 0.07 2.22 5.51 -2.39 -0.01 2.20 16 42 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 43 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 44 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 45 H -0.01 -0.45 8.11 -2.39 -0.02 -0.47 16 46 H 0.03 1.93 6.75 -2.38 -0.02 1.91 16 47 H 0.24 14.31 8.31 -92.71 -0.77 13.53 16 48 H 0.07 1.84 7.10 -2.39 -0.02 1.83 16 49 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 50 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 51 H 0.10 2.51 7.03 -2.39 -0.02 2.49 16 Total: -1.00 -70.14 393.97 5.36 -64.78 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: 0.77 Total: 17.01 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: 5.97 Total: 4.65 kcal Atomic # 7 Polarization: -114.65 SS G_CDS: -4.15 Total: -118.81 kcal Atomic # 8 Polarization: -16.49 SS G_CDS: 0.74 Total: -15.75 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Total: -70.14 5.36 -64.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001004595062.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.519 kcal (2) G-P(sol) polarization free energy of solvation -70.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds