Wall clock time and date at job start Wed Apr 1 2020 06:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.47059 * 2 1 4 4 N 1.29939 * 125.38021 * 90.31479 * 3 2 1 5 5 C 1.36059 * 108.48059 * 180.11696 * 4 3 2 6 6 C 1.47416 * 126.45068 * 179.86144 * 5 4 3 7 7 O 1.21614 * 120.00326 * 185.56829 * 6 5 4 8 8 N 1.34774 * 119.99943 * 5.56690 * 6 5 4 9 9 C 1.47070 * 120.84672 * 5.79826 * 8 6 5 10 10 C 1.53128 * 109.04399 * 233.39836 * 9 8 6 11 11 C 1.53139 * 109.62238 * 306.00077 * 10 9 8 12 12 C 1.52819 * 109.26445 * 60.85108 * 11 10 9 13 13 H 1.08996 * 109.47808 * 58.00798 * 12 11 10 14 14 C 1.53067 * 110.33962 * 178.55171 * 12 11 10 15 15 N 1.47071 * 108.33430 * 175.43392 * 14 12 11 16 16 C 1.36941 * 120.47009 * 126.70765 * 15 14 12 17 17 H 1.08001 * 119.99458 * 324.07813 * 16 15 14 18 18 C 1.38811 * 120.00135 * 144.07833 * 16 15 14 19 19 N 1.31623 * 119.99646 * 169.80773 * 18 16 15 20 20 Si 1.86797 * 120.00116 * 349.81158 * 18 16 15 21 21 H 1.48501 * 109.47161 * 92.39028 * 20 18 16 22 22 H 1.48497 * 109.47029 * 212.39127 * 20 18 16 23 23 H 1.48504 * 109.47012 * 332.39237 * 20 18 16 24 24 C 1.46866 * 119.06133 * 306.67647 * 15 14 12 25 25 C 1.53317 * 109.09674 * 52.65895 * 24 15 14 26 26 C 1.46722 * 120.83968 * 185.77747 * 8 6 5 27 27 H 1.09001 * 109.69618 * 245.32995 * 26 8 6 28 28 C 1.36097 * 107.10240 * 359.59647 * 5 4 3 29 29 C 1.50694 * 126.52393 * 180.27371 * 28 5 4 30 30 O 1.34047 * 125.38003 * 269.97638 * 3 2 1 31 31 H 1.09001 * 109.47004 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46662 * 299.99718 * 1 2 3 33 33 H 1.08994 * 109.46997 * 59.99784 * 1 2 3 34 34 H 1.08999 * 109.47309 * 240.00433 * 2 1 3 35 35 H 1.08998 * 109.47469 * 120.00200 * 2 1 3 36 36 H 1.08996 * 109.54182 * 113.52828 * 9 8 6 37 37 H 1.09001 * 109.53587 * 353.26447 * 9 8 6 38 38 H 1.09004 * 109.44640 * 185.95707 * 10 9 8 39 39 H 1.09004 * 109.44845 * 66.05005 * 10 9 8 40 40 H 1.08999 * 109.51167 * 300.91083 * 11 10 9 41 41 H 1.09006 * 109.50494 * 180.78229 * 11 10 9 42 42 H 1.08994 * 109.69100 * 55.71904 * 14 12 11 43 43 H 1.08998 * 109.72153 * 295.15658 * 14 12 11 44 44 H 0.97003 * 119.99199 * 180.02562 * 19 18 16 45 45 H 1.09006 * 109.53317 * 292.77813 * 24 15 14 46 46 H 1.08999 * 109.59726 * 172.58731 * 24 15 14 47 47 H 1.08997 * 109.55358 * 65.72539 * 25 24 15 48 48 H 1.08994 * 109.55889 * 186.05164 * 25 24 15 49 49 H 1.09005 * 109.47267 * 90.00681 * 29 28 5 50 50 H 1.09002 * 109.46805 * 209.99992 * 29 28 5 51 51 H 1.08992 * 109.47727 * 330.00356 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2886 2.1282 1.0594 5 6 2.7180 3.3572 0.6639 6 6 3.1132 4.4719 1.5439 7 8 3.3835 5.5572 1.0664 8 7 3.1749 4.2883 2.8776 9 6 2.9760 2.9549 3.4653 10 6 1.8835 3.0381 4.5349 11 6 2.2377 4.1306 5.5479 12 6 2.3261 5.4759 4.8284 13 1 1.3771 5.6878 4.3361 14 6 2.6442 6.5928 5.8256 15 7 2.8277 7.8444 5.0754 16 6 2.1160 8.9654 5.4102 17 1 1.0958 8.8748 5.7528 18 6 2.7058 10.2179 5.3093 19 7 1.9715 11.3030 5.4350 20 14 4.5413 10.3633 4.9949 21 1 4.7872 10.4602 3.5336 22 1 5.0636 11.5805 5.6664 23 1 5.2325 9.1649 5.5347 24 6 3.7857 7.8752 3.9626 25 6 3.4703 6.7266 2.9973 26 6 3.4427 5.4136 3.7802 27 1 4.4014 5.2657 4.2774 28 6 2.7197 3.3617 -0.6970 29 6 3.1256 4.5060 -1.5896 30 8 2.2915 2.1524 -1.0929 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3633 0.5138 -0.8899 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 3.9063 2.6144 3.9200 37 1 2.6716 2.2552 2.6869 38 1 1.8040 2.0796 5.0479 39 1 0.9305 3.2765 4.0625 40 1 3.1979 3.9012 6.0099 41 1 1.4658 4.1788 6.3161 42 1 3.5587 6.3518 6.3675 43 1 1.8190 6.7038 6.5290 44 1 2.3837 12.1783 5.3641 45 1 4.7979 7.7583 4.3497 46 1 3.7043 8.8263 3.4364 47 1 2.4981 6.8957 2.5343 48 1 4.2394 6.6759 2.2267 49 1 4.1921 4.4383 -1.8049 50 1 2.5630 4.4568 -2.5219 51 1 2.9156 5.4505 -1.0879 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021685145.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:05:44 Heat of formation + Delta-G solvation = 28.296080 kcal Electronic energy + Delta-G solvation = -32552.308467 eV Core-core repulsion = 28454.688697 eV Total energy + Delta-G solvation = -4097.619770 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.72151 -40.39172 -37.85476 -36.11866 -35.28594 -34.44913 -32.98208 -32.39700 -31.83387 -30.49883 -29.72211 -27.48731 -25.65837 -25.42362 -24.15136 -22.96662 -22.84451 -22.28092 -21.28954 -20.41882 -19.61095 -19.22971 -17.37333 -17.08385 -16.61776 -16.08180 -15.92683 -15.11737 -15.04538 -14.92301 -14.73120 -14.39126 -14.22357 -14.03422 -13.70620 -13.56846 -13.37063 -13.12075 -13.01556 -12.91870 -12.62576 -12.44967 -12.39893 -12.29771 -12.18113 -11.76254 -11.67759 -11.49877 -11.46709 -11.38660 -10.98912 -10.82711 -10.55689 -10.40709 -10.20229 -10.06562 -9.81790 -9.49478 -9.41462 -8.98933 -8.86984 -8.53544 -8.27165 -6.73261 -5.86465 -3.33117 0.92750 1.77730 2.20075 3.03708 3.31652 3.41413 3.53255 3.56538 3.57074 4.35189 4.44283 4.60445 4.62939 4.65000 4.81827 4.93628 5.00604 5.07931 5.13976 5.18652 5.26826 5.27888 5.29329 5.32173 5.43698 5.46519 5.47759 5.57056 5.63842 5.66808 5.71760 5.80878 5.88591 5.93611 6.07692 6.12566 6.18476 6.24486 6.28410 6.39485 6.40087 6.54427 6.64457 6.73016 6.82904 6.90247 7.00072 7.18335 7.26309 7.63437 8.13950 8.31230 8.43815 9.03701 9.79580 10.20770 11.29564 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016639 B = 0.003205 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.394151 B = 8734.104796 C = 9739.501689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.026 4.026 3 C 0.191 3.809 4 N -0.453 5.453 5 C -0.068 4.068 6 C 0.598 3.402 7 O -0.524 6.524 8 N -0.587 5.587 9 C 0.064 3.936 10 C -0.125 4.125 11 C -0.115 4.115 12 C -0.114 4.114 13 H 0.073 0.927 14 C 0.159 3.841 15 N -0.609 5.609 16 C -0.260 4.260 17 H 0.081 0.919 18 C 0.026 3.974 19 N -0.916 5.916 20 Si 0.892 3.108 21 H -0.287 1.287 22 H -0.305 1.305 23 H -0.266 1.266 24 C 0.119 3.881 25 C -0.125 4.125 26 C 0.157 3.843 27 H 0.067 0.933 28 C 0.038 3.962 29 C -0.078 4.078 30 O -0.197 6.197 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.093 0.907 35 H 0.108 0.892 36 H 0.055 0.945 37 H 0.147 0.853 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.064 0.936 42 H 0.023 0.977 43 H 0.065 0.935 44 H 0.262 0.738 45 H 0.024 0.976 46 H 0.071 0.929 47 H 0.067 0.933 48 H 0.087 0.913 49 H 0.090 0.910 50 H 0.079 0.921 51 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.767 -26.404 -12.018 29.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.064 4.064 3 C -0.016 4.016 4 N -0.183 5.183 5 C -0.188 4.188 6 C 0.385 3.615 7 O -0.402 6.402 8 N -0.318 5.318 9 C -0.058 4.058 10 C -0.164 4.164 11 C -0.153 4.153 12 C -0.135 4.135 13 H 0.091 0.909 14 C 0.033 3.967 15 N -0.332 5.332 16 C -0.389 4.389 17 H 0.098 0.902 18 C -0.173 4.173 19 N -0.559 5.559 20 Si 0.723 3.277 21 H -0.215 1.215 22 H -0.234 1.234 23 H -0.191 1.191 24 C -0.007 4.007 25 C -0.164 4.164 26 C 0.055 3.945 27 H 0.085 0.915 28 C -0.017 4.017 29 C -0.135 4.135 30 O -0.084 6.084 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.112 0.888 35 H 0.126 0.874 36 H 0.073 0.927 37 H 0.163 0.837 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.041 0.959 43 H 0.084 0.916 44 H 0.072 0.928 45 H 0.042 0.958 46 H 0.089 0.911 47 H 0.086 0.914 48 H 0.105 0.895 49 H 0.109 0.891 50 H 0.098 0.902 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.838 -25.840 -11.648 28.356 hybrid contribution 0.995 0.342 -0.671 1.248 sum 1.833 -25.497 -12.318 28.376 Atomic orbital electron populations 1.21800 0.92870 1.03102 1.03218 1.20121 0.97033 0.83919 1.05346 1.26413 0.99717 0.96890 0.78622 1.70288 1.16603 1.03053 1.28308 1.21750 1.10364 0.94225 0.92430 1.16842 0.77728 0.85287 0.81665 1.90828 1.50175 1.24122 1.75047 1.48005 1.68779 1.10171 1.04799 1.22863 0.98280 0.85084 0.99603 1.21807 0.98989 0.98874 0.96710 1.21548 1.01530 0.94550 0.97706 1.22067 0.98951 0.95307 0.97150 0.90880 1.20912 0.98732 0.84943 0.92127 1.44367 1.47912 1.08559 1.32406 1.18889 0.95194 0.83245 1.41537 0.90157 1.25465 0.97671 0.95510 0.98651 1.69771 1.35266 0.97413 1.53496 0.86804 0.87112 0.76493 0.77266 1.21463 1.23374 1.19124 1.21607 0.92396 0.97725 0.88934 1.22575 1.03908 0.92449 0.97452 1.21301 0.97555 0.85660 0.89965 0.91529 1.23740 0.98023 0.85459 0.94524 1.20645 1.02323 0.92730 0.97755 1.84312 1.63839 1.22439 1.37796 0.90756 0.91513 0.92117 0.88807 0.87385 0.92698 0.83679 0.91373 0.91959 0.92142 0.91727 0.95924 0.91613 0.92827 0.95800 0.91140 0.91392 0.89455 0.89123 0.90234 0.86422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.89 37.16 0.37 -0.38 16 2 C -0.03 -0.14 6.56 -27.88 -0.18 -0.32 16 3 C 0.19 1.88 7.56 -13.08 -0.10 1.78 16 4 N -0.45 -5.50 7.73 -7.66 -0.06 -5.56 16 5 C -0.07 -0.95 6.73 -83.02 -0.56 -1.51 16 6 C 0.60 9.84 7.57 -12.52 -0.09 9.75 16 7 O -0.52 -9.58 10.46 5.27 0.06 -9.52 16 8 N -0.59 -9.33 2.97 -166.57 -0.49 -9.83 16 9 C 0.06 0.83 6.33 -3.66 -0.02 0.81 16 10 C -0.13 -1.53 6.06 -26.59 -0.16 -1.70 16 11 C -0.12 -1.58 5.24 -26.75 -0.14 -1.72 16 12 C -0.11 -2.00 2.21 -90.53 -0.20 -2.20 16 13 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 14 C 0.16 3.27 5.86 -3.70 -0.02 3.24 16 15 N -0.61 -15.16 2.70 -172.25 -0.46 -15.63 16 16 C -0.26 -7.56 10.01 -15.06 -0.15 -7.71 16 17 H 0.08 2.50 8.06 -52.49 -0.42 2.08 16 18 C 0.03 0.78 5.35 -17.43 -0.09 0.69 16 19 N -0.92 -29.06 13.97 55.49 0.78 -28.29 16 20 Si 0.89 23.48 24.34 -169.99 -4.14 19.34 16 21 H -0.29 -7.40 6.80 56.52 0.38 -7.02 16 22 H -0.31 -8.11 7.11 56.52 0.40 -7.71 16 23 H -0.27 -6.80 6.07 56.52 0.34 -6.45 16 24 C 0.12 2.80 4.14 -3.68 -0.02 2.78 16 25 C -0.12 -2.56 3.82 -26.62 -0.10 -2.66 16 26 C 0.16 2.79 2.64 -67.72 -0.18 2.61 16 27 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 28 C 0.04 0.46 7.44 -35.08 -0.26 0.20 16 29 C -0.08 -0.77 9.94 36.00 0.36 -0.41 16 30 O -0.20 -2.13 10.73 6.52 0.07 -2.06 16 31 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 32 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.15 1.83 3.68 -76.16 -0.28 1.55 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.07 1.35 7.93 -51.93 -0.41 0.93 16 44 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 45 H 0.02 0.56 6.52 -51.93 -0.34 0.22 16 46 H 0.07 1.81 5.00 -51.93 -0.26 1.55 16 47 H 0.07 1.53 7.48 -51.93 -0.39 1.14 16 48 H 0.09 1.78 6.09 -51.93 -0.32 1.46 16 49 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 50 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 51 H 0.12 1.38 6.38 -51.93 -0.33 1.05 16 LS Contribution 381.80 15.07 5.75 5.75 Total: -1.00 -34.19 381.80 -8.36 -42.55 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -8.30 Total: -0.02 kcal Atomic # 6 Polarization: 4.81 SS G_CDS: -1.56 Total: 3.25 kcal Atomic # 7 Polarization: -59.06 SS G_CDS: -0.24 Total: -59.30 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: 0.12 Total: -11.58 kcal Atomic # 14 Polarization: 23.48 SS G_CDS: -4.14 Total: 19.34 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.19 -8.36 -42.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021685145.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.844 kcal (2) G-P(sol) polarization free energy of solvation -34.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds