Wall clock time and date at job start Wed Apr 1 2020 06:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.47059 * 2 1 4 4 N 1.29939 * 125.38021 * 90.31479 * 3 2 1 5 5 C 1.36059 * 108.48059 * 180.11696 * 4 3 2 6 6 C 1.47416 * 126.45068 * 179.86144 * 5 4 3 7 7 O 1.21614 * 120.00326 * 185.56829 * 6 5 4 8 8 N 1.34774 * 119.99943 * 5.56690 * 6 5 4 9 9 C 1.47070 * 120.84672 * 5.79826 * 8 6 5 10 10 C 1.53128 * 109.04399 * 233.39836 * 9 8 6 11 11 C 1.53139 * 109.62238 * 306.00077 * 10 9 8 12 12 C 1.52819 * 109.26445 * 60.85108 * 11 10 9 13 13 H 1.08996 * 109.47808 * 58.00798 * 12 11 10 14 14 C 1.53067 * 110.33962 * 178.55171 * 12 11 10 15 15 N 1.47071 * 108.33430 * 175.43392 * 14 12 11 16 16 C 1.36941 * 120.47009 * 126.70765 * 15 14 12 17 17 H 1.08001 * 119.99458 * 324.07813 * 16 15 14 18 18 C 1.38811 * 120.00135 * 144.07833 * 16 15 14 19 19 N 1.31623 * 119.99646 * 169.80773 * 18 16 15 20 20 Si 1.86797 * 120.00116 * 349.81158 * 18 16 15 21 21 H 1.48501 * 109.47161 * 92.39028 * 20 18 16 22 22 H 1.48497 * 109.47029 * 212.39127 * 20 18 16 23 23 H 1.48504 * 109.47012 * 332.39237 * 20 18 16 24 24 C 1.46866 * 119.06133 * 306.67647 * 15 14 12 25 25 C 1.53317 * 109.09674 * 52.65895 * 24 15 14 26 26 C 1.46722 * 120.83968 * 185.77747 * 8 6 5 27 27 H 1.09001 * 109.69618 * 245.32995 * 26 8 6 28 28 C 1.36097 * 107.10240 * 359.59647 * 5 4 3 29 29 C 1.50694 * 126.52393 * 180.27371 * 28 5 4 30 30 O 1.34047 * 125.38003 * 269.97638 * 3 2 1 31 31 H 1.09001 * 109.47004 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46662 * 299.99718 * 1 2 3 33 33 H 1.08994 * 109.46997 * 59.99784 * 1 2 3 34 34 H 1.08999 * 109.47309 * 240.00433 * 2 1 3 35 35 H 1.08998 * 109.47469 * 120.00200 * 2 1 3 36 36 H 1.08996 * 109.54182 * 113.52828 * 9 8 6 37 37 H 1.09001 * 109.53587 * 353.26447 * 9 8 6 38 38 H 1.09004 * 109.44640 * 185.95707 * 10 9 8 39 39 H 1.09004 * 109.44845 * 66.05005 * 10 9 8 40 40 H 1.08999 * 109.51167 * 300.91083 * 11 10 9 41 41 H 1.09006 * 109.50494 * 180.78229 * 11 10 9 42 42 H 1.08994 * 109.69100 * 55.71904 * 14 12 11 43 43 H 1.08998 * 109.72153 * 295.15658 * 14 12 11 44 44 H 0.97003 * 119.99199 * 180.02562 * 19 18 16 45 45 H 1.09006 * 109.53317 * 292.77813 * 24 15 14 46 46 H 1.08999 * 109.59726 * 172.58731 * 24 15 14 47 47 H 1.08997 * 109.55358 * 65.72539 * 25 24 15 48 48 H 1.08994 * 109.55889 * 186.05164 * 25 24 15 49 49 H 1.09005 * 109.47267 * 90.00681 * 29 28 5 50 50 H 1.09002 * 109.46805 * 209.99992 * 29 28 5 51 51 H 1.08992 * 109.47727 * 330.00356 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2886 2.1282 1.0594 5 6 2.7180 3.3572 0.6639 6 6 3.1132 4.4719 1.5439 7 8 3.3835 5.5572 1.0664 8 7 3.1749 4.2883 2.8776 9 6 2.9760 2.9549 3.4653 10 6 1.8835 3.0381 4.5349 11 6 2.2377 4.1306 5.5479 12 6 2.3261 5.4759 4.8284 13 1 1.3771 5.6878 4.3361 14 6 2.6442 6.5928 5.8256 15 7 2.8277 7.8444 5.0754 16 6 2.1160 8.9654 5.4102 17 1 1.0958 8.8748 5.7528 18 6 2.7058 10.2179 5.3093 19 7 1.9715 11.3030 5.4350 20 14 4.5413 10.3633 4.9949 21 1 4.7872 10.4602 3.5336 22 1 5.0636 11.5805 5.6664 23 1 5.2325 9.1649 5.5347 24 6 3.7857 7.8752 3.9626 25 6 3.4703 6.7266 2.9973 26 6 3.4427 5.4136 3.7802 27 1 4.4014 5.2657 4.2774 28 6 2.7197 3.3617 -0.6970 29 6 3.1256 4.5060 -1.5896 30 8 2.2915 2.1524 -1.0929 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3633 0.5138 -0.8899 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 3.9063 2.6144 3.9200 37 1 2.6716 2.2552 2.6869 38 1 1.8040 2.0796 5.0479 39 1 0.9305 3.2765 4.0625 40 1 3.1979 3.9012 6.0099 41 1 1.4658 4.1788 6.3161 42 1 3.5587 6.3518 6.3675 43 1 1.8190 6.7038 6.5290 44 1 2.3837 12.1783 5.3641 45 1 4.7979 7.7583 4.3497 46 1 3.7043 8.8263 3.4364 47 1 2.4981 6.8957 2.5343 48 1 4.2394 6.6759 2.2267 49 1 4.1921 4.4383 -1.8049 50 1 2.5630 4.4568 -2.5219 51 1 2.9156 5.4505 -1.0879 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021685145.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:05:43 Heat of formation + Delta-G solvation = 5.294405 kcal Electronic energy + Delta-G solvation = -32553.305894 eV Core-core repulsion = 28454.688697 eV Total energy + Delta-G solvation = -4098.617197 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -44.58745 -41.71439 -39.29925 -37.59512 -36.21831 -35.16757 -34.41635 -34.17448 -32.58904 -32.35530 -31.22628 -28.42640 -27.31899 -26.56903 -25.05759 -24.32822 -24.29764 -23.49267 -22.36255 -21.74178 -21.14225 -20.31238 -18.84807 -18.29892 -17.97195 -17.42837 -17.11744 -16.73915 -16.35694 -15.95573 -15.68547 -15.57691 -15.49783 -15.42175 -14.91725 -14.88750 -14.45287 -14.42059 -14.20350 -14.10797 -13.88428 -13.77685 -13.59872 -13.45321 -13.28158 -13.21720 -12.76441 -12.62383 -12.55390 -12.37987 -12.27372 -12.21624 -12.03817 -12.02118 -11.83326 -11.72023 -11.47011 -11.31721 -10.86920 -10.67325 -10.26192 -9.92237 -9.51725 -8.79886 -8.19584 -5.63467 -0.01152 0.88199 1.30172 1.36575 1.39356 1.47289 1.87999 2.16762 2.39293 2.75971 3.07622 3.27665 3.43492 3.55778 3.76124 3.80111 3.95286 4.06221 4.12382 4.20694 4.22439 4.25037 4.28428 4.36377 4.37624 4.44025 4.48847 4.53297 4.57687 4.73782 4.77608 4.81335 4.82755 4.86953 4.88605 4.96073 4.98895 5.01252 5.07567 5.08961 5.12006 5.23543 5.28128 5.32794 5.34449 5.45435 5.53981 5.78665 5.89691 6.11048 6.29581 6.50544 6.90565 7.07407 7.57029 8.01175 9.00164 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016639 B = 0.003205 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.394151 B = 8734.104796 C = 9739.501689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.025 4.025 3 C 0.203 3.797 4 N -0.469 5.469 5 C -0.096 4.096 6 C 0.589 3.411 7 O -0.554 6.554 8 N -0.589 5.589 9 C 0.061 3.939 10 C -0.118 4.118 11 C -0.108 4.108 12 C -0.102 4.102 13 H 0.042 0.958 14 C 0.156 3.844 15 N -0.623 5.623 16 C -0.252 4.252 17 H 0.044 0.956 18 C -0.032 4.032 19 N -0.963 5.963 20 Si 0.955 3.045 21 H -0.282 1.282 22 H -0.307 1.307 23 H -0.249 1.249 24 C 0.118 3.882 25 C -0.108 4.108 26 C 0.161 3.839 27 H 0.079 0.921 28 C 0.042 3.958 29 C -0.077 4.077 30 O -0.195 6.195 31 H 0.099 0.901 32 H 0.050 0.950 33 H 0.053 0.947 34 H 0.119 0.881 35 H 0.126 0.874 36 H 0.071 0.929 37 H 0.154 0.846 38 H 0.103 0.897 39 H 0.046 0.954 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.043 0.957 43 H 0.059 0.941 44 H 0.263 0.737 45 H 0.037 0.963 46 H 0.044 0.956 47 H 0.037 0.963 48 H 0.091 0.909 49 H 0.105 0.895 50 H 0.104 0.896 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.216 -30.650 -12.618 33.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.063 4.063 3 C -0.005 4.005 4 N -0.198 5.198 5 C -0.215 4.215 6 C 0.378 3.622 7 O -0.434 6.434 8 N -0.319 5.319 9 C -0.060 4.060 10 C -0.156 4.156 11 C -0.147 4.147 12 C -0.123 4.123 13 H 0.061 0.939 14 C 0.031 3.969 15 N -0.347 5.347 16 C -0.382 4.382 17 H 0.062 0.938 18 C -0.227 4.227 19 N -0.608 5.608 20 Si 0.784 3.216 21 H -0.209 1.209 22 H -0.236 1.236 23 H -0.173 1.173 24 C -0.008 4.008 25 C -0.147 4.147 26 C 0.059 3.941 27 H 0.097 0.903 28 C -0.015 4.015 29 C -0.133 4.133 30 O -0.082 6.082 31 H 0.117 0.883 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.137 0.863 35 H 0.144 0.856 36 H 0.089 0.911 37 H 0.171 0.829 38 H 0.121 0.879 39 H 0.065 0.935 40 H 0.097 0.903 41 H 0.092 0.908 42 H 0.061 0.939 43 H 0.077 0.923 44 H 0.071 0.929 45 H 0.055 0.945 46 H 0.062 0.938 47 H 0.056 0.944 48 H 0.109 0.891 49 H 0.123 0.877 50 H 0.122 0.878 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.288 -30.156 -12.231 32.623 hybrid contribution 0.402 1.549 -0.552 1.692 sum 2.690 -28.608 -12.783 31.449 Atomic orbital electron populations 1.21797 0.92512 1.04379 1.02069 1.20470 0.97095 0.81262 1.07464 1.27419 0.97484 0.97853 0.77733 1.70173 1.17840 1.02553 1.29266 1.21446 1.12628 0.94601 0.92797 1.17210 0.77264 0.85707 0.82053 1.90792 1.51529 1.25496 1.75581 1.48055 1.68671 1.10655 1.04565 1.23106 0.99293 0.83533 1.00074 1.21776 0.97822 0.99868 0.96137 1.21525 1.02954 0.92272 0.97899 1.21879 0.97281 0.96664 0.96516 0.93931 1.21099 0.99373 0.83854 0.92598 1.44497 1.47844 1.08829 1.33577 1.18798 0.94197 0.84987 1.40168 0.93782 1.26149 1.02099 0.95112 0.99302 1.69911 1.37151 0.97981 1.55803 0.85787 0.81716 0.76778 0.77364 1.20862 1.23573 1.17291 1.21614 0.92551 0.97710 0.88889 1.22327 1.02203 0.93299 0.96834 1.21106 0.98092 0.85046 0.89898 0.90299 1.24029 0.96972 0.86195 0.94260 1.20671 1.03604 0.90901 0.98098 1.84353 1.63775 1.21997 1.38106 0.88273 0.93110 0.92832 0.86260 0.85641 0.91121 0.82942 0.87905 0.93529 0.90328 0.90793 0.93866 0.92289 0.92861 0.94485 0.93781 0.94413 0.89129 0.87666 0.87778 0.88742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.89 71.98 0.71 -0.34 16 2 C -0.03 -0.18 6.56 29.85 0.20 0.02 16 3 C 0.20 3.50 7.56 88.39 0.67 4.17 16 4 N -0.47 -10.56 7.73 -293.04 -2.27 -12.83 16 5 C -0.10 -2.63 6.73 40.41 0.27 -2.36 16 6 C 0.59 19.41 7.57 86.66 0.66 20.07 16 7 O -0.55 -20.81 10.46 -4.07 -0.04 -20.85 16 8 N -0.59 -18.16 2.97 -799.17 -2.37 -20.53 16 9 C 0.06 1.43 6.33 86.31 0.55 1.98 16 10 C -0.12 -2.54 6.06 30.68 0.19 -2.36 16 11 C -0.11 -2.68 5.24 30.58 0.16 -2.52 16 12 C -0.10 -3.53 2.21 -10.74 -0.02 -3.55 16 13 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 14 C 0.16 6.32 5.86 86.29 0.51 6.82 16 15 N -0.62 -31.50 2.70 -698.88 -1.89 -33.38 16 16 C -0.25 -15.20 10.01 84.03 0.84 -14.36 16 17 H 0.04 2.92 8.06 -2.91 -0.02 2.90 16 18 C -0.03 -1.97 5.35 84.86 0.45 -1.51 16 19 N -0.96 -63.39 13.97 21.65 0.30 -63.09 16 20 Si 0.96 49.41 24.34 68.60 1.67 51.08 16 21 H -0.28 -14.20 6.80 99.48 0.68 -13.53 16 22 H -0.31 -15.86 7.11 99.48 0.71 -15.15 16 23 H -0.25 -12.04 6.07 99.48 0.60 -11.44 16 24 C 0.12 5.54 4.14 86.42 0.36 5.90 16 25 C -0.11 -4.49 3.82 30.66 0.12 -4.37 16 26 C 0.16 5.59 2.64 45.00 0.12 5.71 16 27 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 28 C 0.04 0.98 7.44 25.19 0.19 1.16 16 29 C -0.08 -1.45 9.94 71.23 0.71 -0.74 16 30 O -0.19 -3.81 10.73 0.40 0.00 -3.81 16 31 H 0.10 0.24 8.14 -2.39 -0.02 0.22 16 32 H 0.05 0.53 8.14 -2.38 -0.02 0.51 16 33 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.12 0.31 8.14 -2.39 -0.02 0.30 16 35 H 0.13 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.15 3.47 3.68 -50.23 -0.18 3.28 16 38 H 0.10 1.58 8.14 -2.38 -0.02 1.56 16 39 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 42 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.06 2.44 7.93 -2.39 -0.02 2.42 16 44 H 0.26 16.36 8.31 -92.71 -0.77 15.59 16 45 H 0.04 1.66 6.52 -2.38 -0.02 1.65 16 46 H 0.04 2.29 5.00 -2.39 -0.01 2.28 16 47 H 0.04 1.78 7.48 -2.39 -0.02 1.76 16 48 H 0.09 3.74 6.09 -2.39 -0.01 3.72 16 49 H 0.11 1.67 8.14 -2.38 -0.02 1.65 16 50 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 51 H 0.09 2.29 6.38 -2.39 -0.02 2.28 16 Total: -1.00 -78.24 381.80 2.69 -75.55 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: 0.62 Total: 14.17 kcal Atomic # 6 Polarization: 7.04 SS G_CDS: 6.66 Total: 13.70 kcal Atomic # 7 Polarization: -123.61 SS G_CDS: -6.22 Total: -129.84 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: -0.04 Total: -24.66 kcal Atomic # 14 Polarization: 49.41 SS G_CDS: 1.67 Total: 51.08 kcal Total: -78.24 2.69 -75.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021685145.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.847 kcal (2) G-P(sol) polarization free energy of solvation -78.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds