Wall clock time and date at job start Wed Apr 1 2020 06:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50705 * 109.47284 * 2 1 4 4 O 1.34253 * 126.52830 * 269.98347 * 3 2 1 5 5 C 1.34048 * 108.22617 * 179.97438 * 4 3 2 6 6 N 1.29930 * 109.24458 * 359.97438 * 5 4 3 7 7 C 1.36064 * 108.47939 * 359.97438 * 6 5 4 8 8 C 1.47419 * 126.45240 * 179.97438 * 7 6 5 9 9 O 1.21609 * 120.00014 * 176.11446 * 8 7 6 10 10 N 1.34780 * 119.99892 * 356.11375 * 8 7 6 11 11 C 1.46925 * 120.62946 * 5.63817 * 10 8 7 12 12 C 1.53191 * 108.77887 * 126.36840 * 11 10 8 13 13 C 1.53037 * 109.31077 * 54.63227 * 12 11 10 14 14 C 1.53037 * 109.54041 * 298.63737 * 13 12 11 15 15 C 1.46924 * 120.62990 * 185.35585 * 10 8 7 16 16 H 1.08996 * 109.58361 * 113.84532 * 15 10 8 17 17 C 1.52995 * 109.58655 * 353.41952 * 15 10 8 18 18 H 1.08999 * 109.87509 * 51.64797 * 17 15 10 19 19 C 1.54327 * 109.88423 * 290.63027 * 17 15 10 20 20 C 1.55400 * 102.82960 * 218.48590 * 19 17 15 21 21 C 1.54914 * 101.66835 * 35.33615 * 20 19 17 22 22 N 1.47024 * 109.87964 * 172.66286 * 17 15 10 23 23 C 1.36935 * 125.65070 * 298.32051 * 22 17 15 24 24 H 1.08006 * 119.99823 * 352.86084 * 23 22 17 25 25 C 1.38812 * 120.00486 * 172.86347 * 23 22 17 26 26 N 1.31621 * 119.99519 * 0.02562 * 25 23 22 27 27 Si 1.86794 * 120.00529 * 180.02562 * 25 23 22 28 28 H 1.48502 * 109.46915 * 59.99686 * 27 25 23 29 29 H 1.48490 * 109.47468 * 179.97438 * 27 25 23 30 30 H 1.48501 * 109.47209 * 300.00523 * 27 25 23 31 31 H 1.09000 * 109.47137 * 299.99391 * 1 2 3 32 32 H 1.08997 * 109.47519 * 59.99653 * 1 2 3 33 33 H 1.09003 * 109.47044 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.47137 * 240.00609 * 2 1 3 35 35 H 1.08997 * 109.47519 * 120.00347 * 2 1 3 36 36 H 1.08006 * 125.37994 * 179.97438 * 5 4 3 37 37 H 1.09004 * 109.58757 * 246.15670 * 11 10 8 38 38 H 1.09006 * 109.58982 * 6.57889 * 11 10 8 39 39 H 1.08994 * 109.49757 * 174.58894 * 12 11 10 40 40 H 1.09000 * 109.49239 * 294.68252 * 12 11 10 41 41 H 1.09004 * 109.46234 * 58.65970 * 13 12 11 42 42 H 1.09002 * 109.45714 * 178.61625 * 13 12 11 43 43 H 1.08993 * 109.50006 * 181.31983 * 14 13 12 44 44 H 1.09005 * 109.50014 * 301.38550 * 14 13 12 45 45 H 1.09006 * 110.71671 * 336.75348 * 19 17 15 46 46 H 1.08992 * 110.71929 * 100.02728 * 19 17 15 47 47 H 1.09002 * 110.88992 * 277.26601 * 20 19 17 48 48 H 1.08993 * 111.04156 * 153.47306 * 20 19 17 49 49 H 1.09001 * 110.36530 * 204.24317 * 21 20 19 50 50 H 1.08993 * 110.36673 * 81.91431 * 21 20 19 51 51 H 0.96999 * 119.99944 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2990 2.1741 -1.0788 5 6 2.7226 3.3742 -0.6579 6 7 2.7285 3.3948 0.6413 7 6 2.3001 2.1853 1.0937 8 6 2.1552 1.7785 2.5033 9 8 1.6931 0.6874 2.7769 10 7 2.5350 2.6159 3.4887 11 6 2.9792 3.9820 3.1804 12 6 2.1563 4.9683 4.0152 13 6 2.2632 4.5914 5.4946 14 6 1.6945 3.1866 5.7073 15 6 2.5068 2.1820 4.8921 16 1 3.5240 2.1373 5.2812 17 6 1.8564 0.8005 4.9889 18 1 2.3356 0.1155 4.2894 19 6 0.3499 0.9062 4.6711 20 6 -0.2864 -0.0887 5.6812 21 6 0.6304 0.0902 6.9170 22 7 1.9815 0.2839 6.3597 23 6 3.1580 0.0248 7.0106 24 1 4.0954 0.0892 6.4780 25 6 3.1460 -0.3206 8.3550 26 7 2.0036 -0.3996 9.0039 27 14 4.7509 -0.6734 9.2433 28 1 5.6210 0.5288 9.1895 29 1 4.4677 -1.0159 10.6601 30 1 5.4402 -1.8129 8.5862 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8933 -0.5137 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 3.0131 4.1946 -1.2975 37 1 4.0358 4.0872 3.4271 38 1 2.8275 4.1852 2.1203 39 1 2.5401 5.9779 3.8683 40 1 1.1127 4.9263 3.7036 41 1 3.3097 4.6095 5.7993 42 1 1.6985 5.3062 6.0932 43 1 1.7495 2.9281 6.7647 44 1 0.6550 3.1615 5.3802 45 1 -0.0115 1.9192 4.8487 46 1 0.1497 0.5985 3.6449 47 1 -0.2382 -1.1100 5.3035 48 1 -1.3137 0.1924 5.9129 49 1 0.6025 -0.8021 7.5424 50 1 0.3275 0.9662 7.4905 51 1 1.9951 -0.6414 9.9433 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025216768.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:01:01 Heat of formation + Delta-G solvation = 57.872773 kcal Electronic energy + Delta-G solvation = -33535.059248 eV Core-core repulsion = 29438.722020 eV Total energy + Delta-G solvation = -4096.337228 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.61066 -40.35087 -37.31724 -36.63752 -35.04799 -34.22710 -32.48546 -32.34115 -30.96599 -29.37814 -29.09058 -27.01697 -25.17405 -24.35667 -24.12692 -23.42419 -22.81531 -21.56845 -20.75446 -20.05508 -19.52328 -18.52454 -17.26529 -17.00864 -16.85679 -15.83311 -15.59689 -15.14427 -14.97454 -14.90634 -14.51392 -14.42471 -14.03102 -13.80179 -13.56304 -13.55636 -13.17301 -12.84257 -12.78922 -12.66820 -12.07731 -11.86068 -11.71679 -11.64727 -11.54678 -11.33609 -11.11270 -11.05680 -10.96445 -10.79651 -10.74701 -10.41587 -10.32943 -10.06822 -10.00993 -9.60980 -9.52425 -9.41197 -9.32084 -8.92816 -8.69784 -8.44783 -7.92149 -6.60217 -5.57055 -2.92201 1.05203 1.94743 2.41336 3.28239 3.46126 3.49054 3.51006 3.51854 3.88792 4.48081 4.59846 4.68208 4.92227 5.09081 5.15461 5.17411 5.23210 5.35295 5.39435 5.52111 5.53565 5.64714 5.66888 5.74670 5.76153 5.80614 5.90160 6.01007 6.02777 6.04144 6.10341 6.17747 6.19763 6.24407 6.34802 6.45363 6.53677 6.61301 6.66705 6.71744 6.82957 6.91633 7.05380 7.14721 7.21475 7.32482 7.60637 7.72884 7.77085 7.86617 7.99706 8.43882 8.59906 9.35834 9.98538 10.67447 11.51009 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013148 B = 0.003890 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.054806 B = 7196.462199 C = 7911.820088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.045 4.045 3 C 0.039 3.961 4 O -0.200 6.200 5 C 0.167 3.833 6 N -0.461 5.461 7 C -0.062 4.062 8 C 0.580 3.420 9 O -0.505 6.505 10 N -0.582 5.582 11 C 0.066 3.934 12 C -0.128 4.128 13 C -0.122 4.122 14 C -0.125 4.125 15 C 0.135 3.865 16 H 0.071 0.929 17 C 0.164 3.836 18 H 0.075 0.925 19 C -0.124 4.124 20 C -0.150 4.150 21 C 0.168 3.832 22 N -0.596 5.596 23 C -0.218 4.218 24 H 0.072 0.928 25 C -0.009 4.009 26 N -0.921 5.921 27 Si 0.906 3.094 28 H -0.287 1.287 29 H -0.291 1.291 30 H -0.287 1.287 31 H 0.066 0.934 32 H 0.051 0.949 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.120 0.880 36 H 0.252 0.748 37 H 0.054 0.946 38 H 0.145 0.855 39 H 0.065 0.935 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.056 0.944 43 H 0.085 0.915 44 H 0.065 0.935 45 H 0.053 0.947 46 H 0.084 0.916 47 H 0.054 0.946 48 H 0.048 0.952 49 H 0.083 0.917 50 H 0.012 0.988 51 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.011 8.948 -20.435 22.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.082 4.082 3 C -0.017 4.017 4 O -0.087 6.087 5 C -0.060 4.060 6 N -0.190 5.190 7 C -0.181 4.181 8 C 0.367 3.633 9 O -0.382 6.382 10 N -0.314 5.314 11 C -0.057 4.057 12 C -0.166 4.166 13 C -0.160 4.160 14 C -0.163 4.163 15 C 0.031 3.969 16 H 0.089 0.911 17 C 0.057 3.943 18 H 0.092 0.908 19 C -0.161 4.161 20 C -0.189 4.189 21 C 0.043 3.957 22 N -0.321 5.321 23 C -0.347 4.347 24 H 0.090 0.910 25 C -0.205 4.205 26 N -0.569 5.569 27 Si 0.737 3.263 28 H -0.214 1.214 29 H -0.217 1.217 30 H -0.213 1.213 31 H 0.086 0.914 32 H 0.070 0.930 33 H 0.089 0.911 34 H 0.099 0.901 35 H 0.138 0.862 36 H 0.267 0.733 37 H 0.073 0.927 38 H 0.161 0.839 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.103 0.897 44 H 0.083 0.917 45 H 0.071 0.929 46 H 0.102 0.898 47 H 0.073 0.927 48 H 0.066 0.934 49 H 0.101 0.899 50 H 0.030 0.970 51 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -1.997 8.795 -19.689 21.656 hybrid contribution 0.952 -0.042 0.252 0.986 sum -1.045 8.753 -19.436 21.342 Atomic orbital electron populations 1.21695 0.93046 1.02932 1.02363 1.20379 0.97128 0.85293 1.05395 1.23808 0.99102 0.95648 0.83133 1.84355 1.63757 1.24085 1.36471 1.28139 0.99066 0.87110 0.91700 1.70372 1.18194 1.21252 1.09206 1.21867 1.09130 0.90842 0.96297 1.16829 0.79384 0.85081 0.82017 1.90809 1.43985 1.22258 1.81153 1.48005 1.63495 1.13093 1.06769 1.22818 0.97342 0.80552 1.04994 1.21854 1.00429 0.98374 0.95935 1.21577 1.01166 0.97628 0.95592 1.21908 0.99397 0.93087 1.01867 1.22114 1.00315 0.97147 0.77341 0.91055 1.21671 0.94307 0.90674 0.87616 0.90755 1.23106 0.95416 0.98225 0.99336 1.23060 0.98107 0.98628 0.99122 1.21561 0.82374 1.00523 0.91240 1.44726 1.02345 1.73817 1.11168 1.18952 0.84807 1.39215 0.91683 0.91033 1.24754 0.96715 1.02617 0.96384 1.69919 1.22993 1.54751 1.09208 0.86282 0.83074 0.78045 0.78887 1.21398 1.21731 1.21327 0.91447 0.92987 0.91075 0.90083 0.86231 0.73261 0.92726 0.83884 0.91668 0.92249 0.92266 0.92543 0.89660 0.91670 0.92856 0.89822 0.92728 0.93353 0.89903 0.96969 0.93929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 9.89 37.15 0.37 -1.02 16 2 C -0.04 -0.47 5.89 -27.88 -0.16 -0.63 16 3 C 0.04 0.46 6.69 -35.08 -0.23 0.23 16 4 O -0.20 -2.00 10.73 6.53 0.07 -1.93 16 5 C 0.17 1.38 13.19 51.96 0.69 2.07 16 6 N -0.46 -5.42 7.68 -11.48 -0.09 -5.50 16 7 C -0.06 -0.86 6.75 -83.02 -0.56 -1.42 16 8 C 0.58 9.65 7.29 -12.52 -0.09 9.56 16 9 O -0.50 -9.15 7.71 5.27 0.04 -9.11 16 10 N -0.58 -9.79 2.96 -166.73 -0.49 -10.28 16 11 C 0.07 0.93 6.24 -3.71 -0.02 0.91 16 12 C -0.13 -1.68 6.08 -26.61 -0.16 -1.84 16 13 C -0.12 -1.85 5.88 -26.69 -0.16 -2.00 16 14 C -0.12 -2.31 4.94 -26.83 -0.13 -2.45 16 15 C 0.13 2.65 2.70 -67.82 -0.18 2.47 16 16 H 0.07 1.56 7.79 -51.93 -0.40 1.16 16 17 C 0.16 3.62 2.28 -66.95 -0.15 3.46 16 18 H 0.08 1.79 5.76 -52.50 -0.30 1.49 16 19 C -0.12 -2.47 5.20 -24.76 -0.13 -2.59 16 20 C -0.15 -3.16 7.09 -24.45 -0.17 -3.34 16 21 C 0.17 4.25 5.61 -2.52 -0.01 4.24 16 22 N -0.60 -15.41 2.83 -162.57 -0.46 -15.87 16 23 C -0.22 -6.11 9.70 -15.06 -0.15 -6.26 16 24 H 0.07 1.98 7.83 -52.48 -0.41 1.57 16 25 C -0.01 -0.25 5.48 -17.43 -0.10 -0.35 16 26 N -0.92 -27.27 10.29 55.49 0.57 -26.70 16 27 Si 0.91 22.51 29.55 -169.99 -5.02 17.49 16 28 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 29 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 30 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.12 1.47 6.57 -51.93 -0.34 1.13 16 36 H 0.25 0.68 8.06 -52.48 -0.42 0.26 16 37 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.14 1.89 3.78 -75.39 -0.29 1.61 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.08 1.86 8.01 -51.93 -0.42 1.45 16 44 H 0.06 1.21 5.44 -51.93 -0.28 0.93 16 45 H 0.05 1.04 5.10 -51.93 -0.26 0.78 16 46 H 0.08 1.63 5.62 -51.81 -0.29 1.34 16 47 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 48 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 49 H 0.08 2.35 6.38 -51.93 -0.33 2.02 16 50 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 51 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 380.34 15.07 5.73 5.73 Total: -1.00 -31.91 380.34 -8.98 -40.89 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -7.96 Total: 4.25 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: -1.37 Total: 1.03 kcal Atomic # 7 Polarization: -57.89 SS G_CDS: -0.47 Total: -58.36 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: 0.11 Total: -11.04 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.91 -8.98 -40.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025216768.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.761 kcal (2) G-P(sol) polarization free energy of solvation -31.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds