Wall clock time and date at job start Wed Apr 1 2020 06:01:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 C 1.50705 * 109.47284 * 2 1
4 4 O 1.34253 * 126.52830 * 269.98347 * 3 2 1
5 5 C 1.34048 * 108.22617 * 179.97438 * 4 3 2
6 6 N 1.29930 * 109.24458 * 359.97438 * 5 4 3
7 7 C 1.36064 * 108.47939 * 359.97438 * 6 5 4
8 8 C 1.47419 * 126.45240 * 179.97438 * 7 6 5
9 9 O 1.21609 * 120.00014 * 176.11446 * 8 7 6
10 10 N 1.34780 * 119.99892 * 356.11375 * 8 7 6
11 11 C 1.46925 * 120.62946 * 5.63817 * 10 8 7
12 12 C 1.53191 * 108.77887 * 126.36840 * 11 10 8
13 13 C 1.53037 * 109.31077 * 54.63227 * 12 11 10
14 14 C 1.53037 * 109.54041 * 298.63737 * 13 12 11
15 15 C 1.46924 * 120.62990 * 185.35585 * 10 8 7
16 16 H 1.08996 * 109.58361 * 113.84532 * 15 10 8
17 17 C 1.52995 * 109.58655 * 353.41952 * 15 10 8
18 18 H 1.08999 * 109.87509 * 51.64797 * 17 15 10
19 19 C 1.54327 * 109.88423 * 290.63027 * 17 15 10
20 20 C 1.55400 * 102.82960 * 218.48590 * 19 17 15
21 21 C 1.54914 * 101.66835 * 35.33615 * 20 19 17
22 22 N 1.47024 * 109.87964 * 172.66286 * 17 15 10
23 23 C 1.36935 * 125.65070 * 298.32051 * 22 17 15
24 24 H 1.08006 * 119.99823 * 352.86084 * 23 22 17
25 25 C 1.38812 * 120.00486 * 172.86347 * 23 22 17
26 26 N 1.31621 * 119.99519 * 0.02562 * 25 23 22
27 27 Si 1.86794 * 120.00529 * 180.02562 * 25 23 22
28 28 H 1.48502 * 109.46915 * 59.99686 * 27 25 23
29 29 H 1.48490 * 109.47468 * 179.97438 * 27 25 23
30 30 H 1.48501 * 109.47209 * 300.00523 * 27 25 23
31 31 H 1.09000 * 109.47137 * 299.99391 * 1 2 3
32 32 H 1.08997 * 109.47519 * 59.99653 * 1 2 3
33 33 H 1.09003 * 109.47044 * 179.97438 * 1 2 3
34 34 H 1.09000 * 109.47137 * 240.00609 * 2 1 3
35 35 H 1.08997 * 109.47519 * 120.00347 * 2 1 3
36 36 H 1.08006 * 125.37994 * 179.97438 * 5 4 3
37 37 H 1.09004 * 109.58757 * 246.15670 * 11 10 8
38 38 H 1.09006 * 109.58982 * 6.57889 * 11 10 8
39 39 H 1.08994 * 109.49757 * 174.58894 * 12 11 10
40 40 H 1.09000 * 109.49239 * 294.68252 * 12 11 10
41 41 H 1.09004 * 109.46234 * 58.65970 * 13 12 11
42 42 H 1.09002 * 109.45714 * 178.61625 * 13 12 11
43 43 H 1.08993 * 109.50006 * 181.31983 * 14 13 12
44 44 H 1.09005 * 109.50014 * 301.38550 * 14 13 12
45 45 H 1.09006 * 110.71671 * 336.75348 * 19 17 15
46 46 H 1.08992 * 110.71929 * 100.02728 * 19 17 15
47 47 H 1.09002 * 110.88992 * 277.26601 * 20 19 17
48 48 H 1.08993 * 111.04156 * 153.47306 * 20 19 17
49 49 H 1.09001 * 110.36530 * 204.24317 * 21 20 19
50 50 H 1.08993 * 110.36673 * 81.91431 * 21 20 19
51 51 H 0.96999 * 119.99944 * 179.97438 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0323 1.4208 0.0000
4 8 2.2990 2.1741 -1.0788
5 6 2.7226 3.3742 -0.6579
6 7 2.7285 3.3948 0.6413
7 6 2.3001 2.1853 1.0937
8 6 2.1552 1.7785 2.5033
9 8 1.6931 0.6874 2.7769
10 7 2.5350 2.6159 3.4887
11 6 2.9792 3.9820 3.1804
12 6 2.1563 4.9683 4.0152
13 6 2.2632 4.5914 5.4946
14 6 1.6945 3.1866 5.7073
15 6 2.5068 2.1820 4.8921
16 1 3.5240 2.1373 5.2812
17 6 1.8564 0.8005 4.9889
18 1 2.3356 0.1155 4.2894
19 6 0.3499 0.9062 4.6711
20 6 -0.2864 -0.0887 5.6812
21 6 0.6304 0.0902 6.9170
22 7 1.9815 0.2839 6.3597
23 6 3.1580 0.0248 7.0106
24 1 4.0954 0.0892 6.4780
25 6 3.1460 -0.3206 8.3550
26 7 2.0036 -0.3996 9.0039
27 14 4.7509 -0.6734 9.2433
28 1 5.6210 0.5288 9.1895
29 1 4.4677 -1.0159 10.6601
30 1 5.4402 -1.8129 8.5862
31 1 -0.3633 0.5137 0.8900
32 1 -0.3634 0.5139 -0.8899
33 1 -0.3633 -1.0277 -0.0005
34 1 1.8933 -0.5137 -0.8900
35 1 1.8933 -0.5139 0.8899
36 1 3.0131 4.1946 -1.2975
37 1 4.0358 4.0872 3.4271
38 1 2.8275 4.1852 2.1203
39 1 2.5401 5.9779 3.8683
40 1 1.1127 4.9263 3.7036
41 1 3.3097 4.6095 5.7993
42 1 1.6985 5.3062 6.0932
43 1 1.7495 2.9281 6.7647
44 1 0.6550 3.1615 5.3802
45 1 -0.0115 1.9192 4.8487
46 1 0.1497 0.5985 3.6449
47 1 -0.2382 -1.1100 5.3035
48 1 -1.3137 0.1924 5.9129
49 1 0.6025 -0.8021 7.5424
50 1 0.3275 0.9662 7.4905
51 1 1.9951 -0.6414 9.9433
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001025216768.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 06:01:01
Heat of formation + Delta-G solvation = 57.872773 kcal
Electronic energy + Delta-G solvation = -33535.059248 eV
Core-core repulsion = 29438.722020 eV
Total energy + Delta-G solvation = -4096.337228 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.99 seconds
Orbital eigenvalues (eV)
-43.61066 -40.35087 -37.31724 -36.63752 -35.04799 -34.22710 -32.48546 -32.34115
-30.96599 -29.37814 -29.09058 -27.01697 -25.17405 -24.35667 -24.12692 -23.42419
-22.81531 -21.56845 -20.75446 -20.05508 -19.52328 -18.52454 -17.26529 -17.00864
-16.85679 -15.83311 -15.59689 -15.14427 -14.97454 -14.90634 -14.51392 -14.42471
-14.03102 -13.80179 -13.56304 -13.55636 -13.17301 -12.84257 -12.78922 -12.66820
-12.07731 -11.86068 -11.71679 -11.64727 -11.54678 -11.33609 -11.11270 -11.05680
-10.96445 -10.79651 -10.74701 -10.41587 -10.32943 -10.06822 -10.00993 -9.60980
-9.52425 -9.41197 -9.32084 -8.92816 -8.69784 -8.44783 -7.92149 -6.60217
-5.57055 -2.92201 1.05203 1.94743 2.41336 3.28239 3.46126 3.49054
3.51006 3.51854 3.88792 4.48081 4.59846 4.68208 4.92227 5.09081
5.15461 5.17411 5.23210 5.35295 5.39435 5.52111 5.53565 5.64714
5.66888 5.74670 5.76153 5.80614 5.90160 6.01007 6.02777 6.04144
6.10341 6.17747 6.19763 6.24407 6.34802 6.45363 6.53677 6.61301
6.66705 6.71744 6.82957 6.91633 7.05380 7.14721 7.21475 7.32482
7.60637 7.72884 7.77085 7.86617 7.99706 8.43882 8.59906 9.35834
9.98538 10.67447 11.51009
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.013148 B = 0.003890 C = 0.003538
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2129.054806 B = 7196.462199 C = 7911.820088
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C -0.045 4.045
3 C 0.039 3.961
4 O -0.200 6.200
5 C 0.167 3.833
6 N -0.461 5.461
7 C -0.062 4.062
8 C 0.580 3.420
9 O -0.505 6.505
10 N -0.582 5.582
11 C 0.066 3.934
12 C -0.128 4.128
13 C -0.122 4.122
14 C -0.125 4.125
15 C 0.135 3.865
16 H 0.071 0.929
17 C 0.164 3.836
18 H 0.075 0.925
19 C -0.124 4.124
20 C -0.150 4.150
21 C 0.168 3.832
22 N -0.596 5.596
23 C -0.218 4.218
24 H 0.072 0.928
25 C -0.009 4.009
26 N -0.921 5.921
27 Si 0.906 3.094
28 H -0.287 1.287
29 H -0.291 1.291
30 H -0.287 1.287
31 H 0.066 0.934
32 H 0.051 0.949
33 H 0.070 0.930
34 H 0.081 0.919
35 H 0.120 0.880
36 H 0.252 0.748
37 H 0.054 0.946
38 H 0.145 0.855
39 H 0.065 0.935
40 H 0.059 0.941
41 H 0.059 0.941
42 H 0.056 0.944
43 H 0.085 0.915
44 H 0.065 0.935
45 H 0.053 0.947
46 H 0.084 0.916
47 H 0.054 0.946
48 H 0.048 0.952
49 H 0.083 0.917
50 H 0.012 0.988
51 H 0.250 0.750
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.011 8.948 -20.435 22.399
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.082 4.082
3 C -0.017 4.017
4 O -0.087 6.087
5 C -0.060 4.060
6 N -0.190 5.190
7 C -0.181 4.181
8 C 0.367 3.633
9 O -0.382 6.382
10 N -0.314 5.314
11 C -0.057 4.057
12 C -0.166 4.166
13 C -0.160 4.160
14 C -0.163 4.163
15 C 0.031 3.969
16 H 0.089 0.911
17 C 0.057 3.943
18 H 0.092 0.908
19 C -0.161 4.161
20 C -0.189 4.189
21 C 0.043 3.957
22 N -0.321 5.321
23 C -0.347 4.347
24 H 0.090 0.910
25 C -0.205 4.205
26 N -0.569 5.569
27 Si 0.737 3.263
28 H -0.214 1.214
29 H -0.217 1.217
30 H -0.213 1.213
31 H 0.086 0.914
32 H 0.070 0.930
33 H 0.089 0.911
34 H 0.099 0.901
35 H 0.138 0.862
36 H 0.267 0.733
37 H 0.073 0.927
38 H 0.161 0.839
39 H 0.083 0.917
40 H 0.078 0.922
41 H 0.077 0.923
42 H 0.075 0.925
43 H 0.103 0.897
44 H 0.083 0.917
45 H 0.071 0.929
46 H 0.102 0.898
47 H 0.073 0.927
48 H 0.066 0.934
49 H 0.101 0.899
50 H 0.030 0.970
51 H 0.061 0.939
Dipole moment (debyes) X Y Z Total
from point charges -1.997 8.795 -19.689 21.656
hybrid contribution 0.952 -0.042 0.252 0.986
sum -1.045 8.753 -19.436 21.342
Atomic orbital electron populations
1.21695 0.93046 1.02932 1.02363 1.20379 0.97128 0.85293 1.05395
1.23808 0.99102 0.95648 0.83133 1.84355 1.63757 1.24085 1.36471
1.28139 0.99066 0.87110 0.91700 1.70372 1.18194 1.21252 1.09206
1.21867 1.09130 0.90842 0.96297 1.16829 0.79384 0.85081 0.82017
1.90809 1.43985 1.22258 1.81153 1.48005 1.63495 1.13093 1.06769
1.22818 0.97342 0.80552 1.04994 1.21854 1.00429 0.98374 0.95935
1.21577 1.01166 0.97628 0.95592 1.21908 0.99397 0.93087 1.01867
1.22114 1.00315 0.97147 0.77341 0.91055 1.21671 0.94307 0.90674
0.87616 0.90755 1.23106 0.95416 0.98225 0.99336 1.23060 0.98107
0.98628 0.99122 1.21561 0.82374 1.00523 0.91240 1.44726 1.02345
1.73817 1.11168 1.18952 0.84807 1.39215 0.91683 0.91033 1.24754
0.96715 1.02617 0.96384 1.69919 1.22993 1.54751 1.09208 0.86282
0.83074 0.78045 0.78887 1.21398 1.21731 1.21327 0.91447 0.92987
0.91075 0.90083 0.86231 0.73261 0.92726 0.83884 0.91668 0.92249
0.92266 0.92543 0.89660 0.91670 0.92856 0.89822 0.92728 0.93353
0.89903 0.96969 0.93929
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.39 9.89 37.15 0.37 -1.02 16
2 C -0.04 -0.47 5.89 -27.88 -0.16 -0.63 16
3 C 0.04 0.46 6.69 -35.08 -0.23 0.23 16
4 O -0.20 -2.00 10.73 6.53 0.07 -1.93 16
5 C 0.17 1.38 13.19 51.96 0.69 2.07 16
6 N -0.46 -5.42 7.68 -11.48 -0.09 -5.50 16
7 C -0.06 -0.86 6.75 -83.02 -0.56 -1.42 16
8 C 0.58 9.65 7.29 -12.52 -0.09 9.56 16
9 O -0.50 -9.15 7.71 5.27 0.04 -9.11 16
10 N -0.58 -9.79 2.96 -166.73 -0.49 -10.28 16
11 C 0.07 0.93 6.24 -3.71 -0.02 0.91 16
12 C -0.13 -1.68 6.08 -26.61 -0.16 -1.84 16
13 C -0.12 -1.85 5.88 -26.69 -0.16 -2.00 16
14 C -0.12 -2.31 4.94 -26.83 -0.13 -2.45 16
15 C 0.13 2.65 2.70 -67.82 -0.18 2.47 16
16 H 0.07 1.56 7.79 -51.93 -0.40 1.16 16
17 C 0.16 3.62 2.28 -66.95 -0.15 3.46 16
18 H 0.08 1.79 5.76 -52.50 -0.30 1.49 16
19 C -0.12 -2.47 5.20 -24.76 -0.13 -2.59 16
20 C -0.15 -3.16 7.09 -24.45 -0.17 -3.34 16
21 C 0.17 4.25 5.61 -2.52 -0.01 4.24 16
22 N -0.60 -15.41 2.83 -162.57 -0.46 -15.87 16
23 C -0.22 -6.11 9.70 -15.06 -0.15 -6.26 16
24 H 0.07 1.98 7.83 -52.48 -0.41 1.57 16
25 C -0.01 -0.25 5.48 -17.43 -0.10 -0.35 16
26 N -0.92 -27.27 10.29 55.49 0.57 -26.70 16
27 Si 0.91 22.51 29.55 -169.99 -5.02 17.49 16
28 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16
29 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16
30 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16
31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16
32 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16
33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16
34 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16
35 H 0.12 1.47 6.57 -51.93 -0.34 1.13 16
36 H 0.25 0.68 8.06 -52.48 -0.42 0.26 16
37 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16
38 H 0.14 1.89 3.78 -75.39 -0.29 1.61 16
39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16
40 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16
41 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16
42 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16
43 H 0.08 1.86 8.01 -51.93 -0.42 1.45 16
44 H 0.06 1.21 5.44 -51.93 -0.28 0.93 16
45 H 0.05 1.04 5.10 -51.93 -0.26 0.78 16
46 H 0.08 1.63 5.62 -51.81 -0.29 1.34 16
47 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16
48 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16
49 H 0.08 2.35 6.38 -51.93 -0.33 2.02 16
50 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16
51 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16
LS Contribution 380.34 15.07 5.73 5.73
Total: -1.00 -31.91 380.34 -8.98 -40.89
By element:
Atomic # 1 Polarization: 12.21 SS G_CDS: -7.96 Total: 4.25 kcal
Atomic # 6 Polarization: 2.40 SS G_CDS: -1.37 Total: 1.03 kcal
Atomic # 7 Polarization: -57.89 SS G_CDS: -0.47 Total: -58.36 kcal
Atomic # 8 Polarization: -11.15 SS G_CDS: 0.11 Total: -11.04 kcal
Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal
Total LS contribution 5.73 Total: 5.73 kcal
Total: -31.91 -8.98 -40.89 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001025216768.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 98.761 kcal
(2) G-P(sol) polarization free energy of solvation -31.909 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.852 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.979 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.888 kcal
(6) G-S(sol) free energy of system = (1) + (5) 57.873 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.99 seconds