Wall clock time and date at job start Wed Apr 1 2020 06:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50705 * 109.47284 * 2 1 4 4 O 1.34253 * 126.52830 * 269.98347 * 3 2 1 5 5 C 1.34048 * 108.22617 * 179.97438 * 4 3 2 6 6 N 1.29930 * 109.24458 * 359.97438 * 5 4 3 7 7 C 1.36064 * 108.47939 * 359.97438 * 6 5 4 8 8 C 1.47419 * 126.45240 * 179.97438 * 7 6 5 9 9 O 1.21609 * 120.00014 * 176.11446 * 8 7 6 10 10 N 1.34780 * 119.99892 * 356.11375 * 8 7 6 11 11 C 1.46925 * 120.62946 * 5.63817 * 10 8 7 12 12 C 1.53191 * 108.77887 * 126.36840 * 11 10 8 13 13 C 1.53037 * 109.31077 * 54.63227 * 12 11 10 14 14 C 1.53037 * 109.54041 * 298.63737 * 13 12 11 15 15 C 1.46924 * 120.62990 * 185.35585 * 10 8 7 16 16 H 1.08996 * 109.58361 * 113.84532 * 15 10 8 17 17 C 1.52995 * 109.58655 * 353.41952 * 15 10 8 18 18 H 1.08999 * 109.87509 * 51.64797 * 17 15 10 19 19 C 1.54327 * 109.88423 * 290.63027 * 17 15 10 20 20 C 1.55400 * 102.82960 * 218.48590 * 19 17 15 21 21 C 1.54914 * 101.66835 * 35.33615 * 20 19 17 22 22 N 1.47024 * 109.87964 * 172.66286 * 17 15 10 23 23 C 1.36935 * 125.65070 * 298.32051 * 22 17 15 24 24 H 1.08006 * 119.99823 * 352.86084 * 23 22 17 25 25 C 1.38812 * 120.00486 * 172.86347 * 23 22 17 26 26 N 1.31621 * 119.99519 * 0.02562 * 25 23 22 27 27 Si 1.86794 * 120.00529 * 180.02562 * 25 23 22 28 28 H 1.48502 * 109.46915 * 59.99686 * 27 25 23 29 29 H 1.48490 * 109.47468 * 179.97438 * 27 25 23 30 30 H 1.48501 * 109.47209 * 300.00523 * 27 25 23 31 31 H 1.09000 * 109.47137 * 299.99391 * 1 2 3 32 32 H 1.08997 * 109.47519 * 59.99653 * 1 2 3 33 33 H 1.09003 * 109.47044 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.47137 * 240.00609 * 2 1 3 35 35 H 1.08997 * 109.47519 * 120.00347 * 2 1 3 36 36 H 1.08006 * 125.37994 * 179.97438 * 5 4 3 37 37 H 1.09004 * 109.58757 * 246.15670 * 11 10 8 38 38 H 1.09006 * 109.58982 * 6.57889 * 11 10 8 39 39 H 1.08994 * 109.49757 * 174.58894 * 12 11 10 40 40 H 1.09000 * 109.49239 * 294.68252 * 12 11 10 41 41 H 1.09004 * 109.46234 * 58.65970 * 13 12 11 42 42 H 1.09002 * 109.45714 * 178.61625 * 13 12 11 43 43 H 1.08993 * 109.50006 * 181.31983 * 14 13 12 44 44 H 1.09005 * 109.50014 * 301.38550 * 14 13 12 45 45 H 1.09006 * 110.71671 * 336.75348 * 19 17 15 46 46 H 1.08992 * 110.71929 * 100.02728 * 19 17 15 47 47 H 1.09002 * 110.88992 * 277.26601 * 20 19 17 48 48 H 1.08993 * 111.04156 * 153.47306 * 20 19 17 49 49 H 1.09001 * 110.36530 * 204.24317 * 21 20 19 50 50 H 1.08993 * 110.36673 * 81.91431 * 21 20 19 51 51 H 0.96999 * 119.99944 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2990 2.1741 -1.0788 5 6 2.7226 3.3742 -0.6579 6 7 2.7285 3.3948 0.6413 7 6 2.3001 2.1853 1.0937 8 6 2.1552 1.7785 2.5033 9 8 1.6931 0.6874 2.7769 10 7 2.5350 2.6159 3.4887 11 6 2.9792 3.9820 3.1804 12 6 2.1563 4.9683 4.0152 13 6 2.2632 4.5914 5.4946 14 6 1.6945 3.1866 5.7073 15 6 2.5068 2.1820 4.8921 16 1 3.5240 2.1373 5.2812 17 6 1.8564 0.8005 4.9889 18 1 2.3356 0.1155 4.2894 19 6 0.3499 0.9062 4.6711 20 6 -0.2864 -0.0887 5.6812 21 6 0.6304 0.0902 6.9170 22 7 1.9815 0.2839 6.3597 23 6 3.1580 0.0248 7.0106 24 1 4.0954 0.0892 6.4780 25 6 3.1460 -0.3206 8.3550 26 7 2.0036 -0.3996 9.0039 27 14 4.7509 -0.6734 9.2433 28 1 5.6210 0.5288 9.1895 29 1 4.4677 -1.0159 10.6601 30 1 5.4402 -1.8129 8.5862 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8933 -0.5137 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 3.0131 4.1946 -1.2975 37 1 4.0358 4.0872 3.4271 38 1 2.8275 4.1852 2.1203 39 1 2.5401 5.9779 3.8683 40 1 1.1127 4.9263 3.7036 41 1 3.3097 4.6095 5.7993 42 1 1.6985 5.3062 6.0932 43 1 1.7495 2.9281 6.7647 44 1 0.6550 3.1615 5.3802 45 1 -0.0115 1.9192 4.8487 46 1 0.1497 0.5985 3.6449 47 1 -0.2382 -1.1100 5.3035 48 1 -1.3137 0.1924 5.9129 49 1 0.6025 -0.8021 7.5424 50 1 0.3275 0.9662 7.4905 51 1 1.9951 -0.6414 9.9433 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025216768.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:01:00 Heat of formation + Delta-G solvation = 38.157588 kcal Electronic energy + Delta-G solvation = -33535.914163 eV Core-core repulsion = 29438.722020 eV Total energy + Delta-G solvation = -4097.192143 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.44091 -41.77007 -38.87067 -38.11969 -35.99570 -35.07628 -34.47541 -33.67386 -32.48941 -31.14052 -30.24273 -28.58758 -26.65099 -26.21637 -25.18712 -24.37489 -24.11384 -22.66270 -22.24759 -21.53755 -21.04829 -19.88800 -18.94736 -18.17902 -17.77586 -17.34333 -16.90960 -16.63154 -16.34905 -16.18789 -15.90996 -15.71287 -15.39056 -15.21292 -14.97278 -14.70712 -14.38779 -14.27093 -14.17203 -13.85870 -13.50746 -13.47560 -13.15930 -13.08004 -12.86657 -12.74074 -12.59674 -12.52913 -12.39604 -12.24882 -12.05340 -12.03744 -11.87476 -11.79876 -11.66672 -11.39325 -11.16994 -11.06801 -10.72294 -10.60167 -10.14132 -9.87829 -9.35771 -8.69480 -7.76606 -5.13810 0.13611 1.11175 1.43612 1.46497 1.52849 1.61255 2.05041 2.31353 2.52608 3.10493 3.35956 3.61293 3.67459 3.82634 3.91996 3.97733 4.02831 4.14607 4.17192 4.25299 4.29665 4.33768 4.37129 4.42441 4.46810 4.59638 4.63465 4.69954 4.80934 4.83248 4.90154 4.92701 4.99247 5.02362 5.07055 5.08201 5.19232 5.20032 5.24728 5.28492 5.31320 5.38158 5.47083 5.53599 5.54651 5.72274 5.74900 5.84696 5.94657 6.29520 6.44412 6.64642 7.15480 7.26943 7.87192 8.54236 9.30118 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013148 B = 0.003890 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.054806 B = 7196.462199 C = 7911.820088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.045 4.045 3 C 0.045 3.955 4 O -0.196 6.196 5 C 0.199 3.801 6 N -0.489 5.489 7 C -0.089 4.089 8 C 0.574 3.426 9 O -0.529 6.529 10 N -0.586 5.586 11 C 0.063 3.937 12 C -0.118 4.118 13 C -0.118 4.118 14 C -0.115 4.115 15 C 0.147 3.853 16 H 0.040 0.960 17 C 0.165 3.835 18 H 0.055 0.945 19 C -0.106 4.106 20 C -0.139 4.139 21 C 0.176 3.824 22 N -0.612 5.612 23 C -0.228 4.228 24 H 0.068 0.932 25 C -0.062 4.062 26 N -0.947 5.947 27 Si 0.970 3.030 28 H -0.280 1.280 29 H -0.292 1.292 30 H -0.281 1.281 31 H 0.043 0.957 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.106 0.894 35 H 0.096 0.904 36 H 0.307 0.693 37 H 0.052 0.948 38 H 0.162 0.838 39 H 0.097 0.903 40 H 0.060 0.940 41 H 0.053 0.947 42 H 0.071 0.929 43 H 0.043 0.957 44 H 0.066 0.934 45 H 0.059 0.941 46 H 0.095 0.905 47 H 0.054 0.946 48 H 0.074 0.926 49 H 0.048 0.952 50 H -0.011 1.011 51 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.760 10.954 -23.835 26.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.083 4.083 3 C -0.011 4.011 4 O -0.083 6.083 5 C -0.028 4.028 6 N -0.218 5.218 7 C -0.207 4.207 8 C 0.363 3.637 9 O -0.409 6.409 10 N -0.318 5.318 11 C -0.058 4.058 12 C -0.156 4.156 13 C -0.155 4.155 14 C -0.153 4.153 15 C 0.042 3.958 16 H 0.058 0.942 17 C 0.059 3.941 18 H 0.072 0.928 19 C -0.143 4.143 20 C -0.177 4.177 21 C 0.051 3.949 22 N -0.337 5.337 23 C -0.357 4.357 24 H 0.086 0.914 25 C -0.255 4.255 26 N -0.597 5.597 27 Si 0.799 3.201 28 H -0.206 1.206 29 H -0.218 1.218 30 H -0.207 1.207 31 H 0.062 0.938 32 H 0.085 0.915 33 H 0.100 0.900 34 H 0.125 0.875 35 H 0.114 0.886 36 H 0.322 0.678 37 H 0.070 0.930 38 H 0.178 0.822 39 H 0.116 0.884 40 H 0.079 0.921 41 H 0.072 0.928 42 H 0.090 0.910 43 H 0.062 0.938 44 H 0.084 0.916 45 H 0.078 0.922 46 H 0.113 0.887 47 H 0.072 0.928 48 H 0.093 0.907 49 H 0.066 0.934 50 H 0.007 0.993 51 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -1.736 10.829 -23.124 25.593 hybrid contribution 0.917 -0.644 1.151 1.606 sum -0.820 10.185 -21.972 24.232 Atomic orbital electron populations 1.21647 0.92426 1.03533 1.01848 1.20382 0.97575 0.84857 1.05451 1.23896 0.98147 0.95981 0.83118 1.84406 1.63768 1.24575 1.35503 1.29355 0.95273 0.87051 0.91106 1.70163 1.19979 1.20522 1.11092 1.21400 1.11803 0.92620 0.94882 1.17237 0.78564 0.84588 0.83298 1.90764 1.45064 1.23081 1.81941 1.48007 1.63985 1.14458 1.05332 1.23075 0.97313 0.79089 1.06361 1.21819 1.00527 0.99651 0.93624 1.21550 1.00732 0.95440 0.97808 1.21740 0.99456 0.95170 0.98906 1.21574 0.98291 0.96262 0.79717 0.94213 1.21686 0.95886 0.91524 0.85035 0.92784 1.22987 0.93563 0.98213 0.99525 1.22951 0.98597 0.99076 0.97108 1.21310 0.83404 0.97756 0.92464 1.44939 1.01958 1.74399 1.12416 1.19201 0.85619 1.38736 0.92167 0.91390 1.25511 0.99844 1.03062 0.97069 1.70141 1.24797 1.55805 1.08948 0.85275 0.79447 0.78030 0.77351 1.20603 1.21840 1.20690 0.93821 0.91471 0.90000 0.87541 0.88621 0.67848 0.92997 0.82161 0.88419 0.92130 0.92797 0.90999 0.93829 0.91579 0.92237 0.88693 0.92759 0.90707 0.93389 0.99348 0.94556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.89 71.98 0.71 -1.76 16 2 C -0.05 -0.89 5.89 29.85 0.18 -0.71 16 3 C 0.05 0.99 6.69 25.19 0.17 1.16 16 4 O -0.20 -3.16 10.73 0.44 0.00 -3.16 16 5 C 0.20 2.39 13.19 130.52 1.72 4.11 16 6 N -0.49 -10.02 7.68 -305.15 -2.34 -12.36 16 7 C -0.09 -2.34 6.75 40.41 0.27 -2.07 16 8 C 0.57 19.17 7.29 86.66 0.63 19.80 16 9 O -0.53 -19.70 7.71 -4.06 -0.03 -19.73 16 10 N -0.59 -19.83 2.96 -799.67 -2.37 -22.20 16 11 C 0.06 1.70 6.24 86.36 0.54 2.24 16 12 C -0.12 -2.84 6.08 30.67 0.19 -2.65 16 13 C -0.12 -3.48 5.88 30.62 0.18 -3.30 16 14 C -0.11 -4.39 4.94 30.53 0.15 -4.24 16 15 C 0.15 6.02 2.70 44.83 0.12 6.14 16 16 H 0.04 1.86 7.79 -2.39 -0.02 1.84 16 17 C 0.16 7.57 2.28 45.34 0.10 7.68 16 18 H 0.05 2.75 5.76 -17.62 -0.10 2.65 16 19 C -0.11 -4.29 5.20 31.87 0.17 -4.13 16 20 C -0.14 -5.94 7.09 32.07 0.23 -5.72 16 21 C 0.18 9.38 5.61 86.86 0.49 9.87 16 22 N -0.61 -33.39 2.83 -668.24 -1.89 -35.28 16 23 C -0.23 -13.41 9.70 84.03 0.82 -12.60 16 24 H 0.07 3.94 7.83 -2.91 -0.02 3.92 16 25 C -0.06 -3.67 5.48 84.86 0.47 -3.20 16 26 N -0.95 -58.76 10.29 21.65 0.22 -58.53 16 27 Si 0.97 47.76 29.55 68.60 2.03 49.79 16 28 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 29 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16 30 H -0.28 -13.44 7.11 99.48 0.71 -12.74 16 31 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.10 2.37 6.57 -2.39 -0.02 2.36 16 36 H 0.31 -0.33 8.06 -2.91 -0.02 -0.36 16 37 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 38 H 0.16 3.86 3.78 -48.72 -0.18 3.67 16 39 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 42 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.04 2.01 8.01 -2.39 -0.02 1.99 16 44 H 0.07 2.49 5.44 -2.38 -0.01 2.47 16 45 H 0.06 2.34 5.10 -2.38 -0.01 2.32 16 46 H 0.10 3.71 5.62 -6.64 -0.04 3.67 16 47 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 48 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 49 H 0.05 2.88 6.38 -2.39 -0.02 2.87 16 50 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 51 H 0.24 14.81 8.31 -92.71 -0.77 14.04 16 Total: -1.00 -74.58 380.34 3.40 -71.18 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: 0.65 Total: 19.68 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: 7.12 Total: 10.61 kcal Atomic # 7 Polarization: -122.00 SS G_CDS: -6.38 Total: -128.38 kcal Atomic # 8 Polarization: -22.86 SS G_CDS: -0.03 Total: -22.89 kcal Atomic # 14 Polarization: 47.76 SS G_CDS: 2.03 Total: 49.79 kcal Total: -74.58 3.40 -71.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025216768.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.342 kcal (2) G-P(sol) polarization free energy of solvation -74.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds