Wall clock time and date at job start Wed Apr 1 2020 06:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50696 * 109.46778 * 2 1 4 4 O 1.34254 * 126.52837 * 270.15928 * 3 2 1 5 5 C 1.34046 * 108.23143 * 180.23322 * 4 3 2 6 6 N 1.29933 * 109.24310 * 359.76375 * 5 4 3 7 7 C 1.36068 * 108.47547 * 0.02562 * 6 5 4 8 8 C 1.47420 * 126.45077 * 179.97438 * 7 6 5 9 9 O 1.21608 * 120.00311 * 175.75768 * 8 7 6 10 10 N 1.34780 * 120.00037 * 355.76044 * 8 7 6 11 11 C 1.46931 * 120.62880 * 7.08496 * 10 8 7 12 12 C 1.53189 * 108.77692 * 126.39046 * 11 10 8 13 13 C 1.53039 * 109.31156 * 54.63661 * 12 11 10 14 14 C 1.53041 * 109.53600 * 298.63407 * 13 12 11 15 15 C 1.46924 * 120.63361 * 187.08451 * 10 8 7 16 16 H 1.08997 * 109.70516 * 113.75327 * 15 10 8 17 17 C 1.52997 * 109.58458 * 353.39551 * 15 10 8 18 18 H 1.09002 * 110.00080 * 313.95500 * 17 15 10 19 19 C 1.54313 * 109.77601 * 75.11412 * 17 15 10 20 20 C 1.55154 * 102.86246 * 141.88404 * 19 17 15 21 21 C 1.54909 * 101.58437 * 324.30498 * 20 19 17 22 22 N 1.47030 * 109.88217 * 192.86614 * 17 15 10 23 23 C 1.36930 * 125.64708 * 61.67248 * 22 17 15 24 24 H 1.07996 * 120.00646 * 356.01728 * 23 22 17 25 25 C 1.38817 * 119.99848 * 176.01666 * 23 22 17 26 26 N 1.31620 * 119.99586 * 0.02562 * 25 23 22 27 27 Si 1.86794 * 120.00240 * 180.02562 * 25 23 22 28 28 H 1.48502 * 109.47101 * 269.99935 * 27 25 23 29 29 H 1.48503 * 109.47337 * 29.99536 * 27 25 23 30 30 H 1.48503 * 109.47457 * 149.99814 * 27 25 23 31 31 H 1.09008 * 109.46743 * 179.97438 * 1 2 3 32 32 H 1.08989 * 109.47333 * 299.99930 * 1 2 3 33 33 H 1.09000 * 109.47117 * 60.00474 * 1 2 3 34 34 H 1.09000 * 109.46860 * 240.00146 * 2 1 3 35 35 H 1.08997 * 109.46702 * 119.99828 * 2 1 3 36 36 H 1.07999 * 125.38386 * 179.80894 * 5 4 3 37 37 H 1.08998 * 109.58502 * 6.59883 * 11 10 8 38 38 H 1.09000 * 109.58436 * 246.17980 * 11 10 8 39 39 H 1.08995 * 109.49896 * 294.68050 * 12 11 10 40 40 H 1.08999 * 109.51867 * 174.59969 * 12 11 10 41 41 H 1.09003 * 109.45981 * 178.61315 * 13 12 11 42 42 H 1.08999 * 109.45363 * 58.64584 * 13 12 11 43 43 H 1.09005 * 109.49721 * 301.41306 * 14 13 12 44 44 H 1.09003 * 109.52717 * 181.33635 * 14 13 12 45 45 H 1.08995 * 110.92149 * 23.47132 * 19 17 15 46 46 H 1.08996 * 110.73932 * 260.21498 * 19 17 15 47 47 H 1.09001 * 111.00757 * 206.22839 * 20 19 17 48 48 H 1.09004 * 111.00665 * 82.37753 * 20 19 17 49 49 H 1.09001 * 110.36441 * 278.17058 * 21 20 19 50 50 H 1.08997 * 110.46396 * 155.89472 * 21 20 19 51 51 H 0.97003 * 119.99772 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2958 2.1752 -1.0788 5 6 2.7259 3.3730 -0.6580 6 7 2.7348 3.3927 0.6412 7 6 2.3027 2.1844 1.0936 8 6 2.1593 1.7771 2.5032 9 8 1.6877 0.6903 2.7772 10 7 2.5510 2.6095 3.4883 11 6 2.9772 3.9821 3.1832 12 6 2.1627 4.9539 4.0428 13 6 2.3023 4.5652 5.5164 14 6 1.7500 3.1537 5.7280 15 6 2.5599 2.1615 4.8875 16 1 3.5854 2.1234 5.2548 17 6 1.9282 0.7714 4.9850 18 1 1.0033 0.7409 4.4090 19 6 2.9155 -0.2891 4.4540 20 6 2.6943 -1.4819 5.4212 21 6 2.4304 -0.7510 6.7613 22 7 1.6520 0.4452 6.3918 23 6 0.8073 1.1349 7.2199 24 1 0.3263 2.0368 6.8712 25 6 0.5691 0.6749 8.5078 26 7 1.1558 -0.4240 8.9330 27 14 -0.5837 1.6152 9.6373 28 1 0.1898 2.6225 10.4069 29 1 -1.6207 2.3020 8.8259 30 1 -1.2370 0.6690 10.5771 31 1 -0.3633 -1.0278 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 3.0183 4.1926 -1.2977 37 1 2.8027 4.1929 2.1282 38 1 4.0375 4.0943 3.4098 39 1 1.1135 4.9055 3.7516 40 1 2.5343 5.9682 3.8973 41 1 1.7435 5.2699 6.1324 42 1 3.3544 4.5898 5.8002 43 1 0.7046 3.1223 5.4209 44 1 1.8278 2.8862 6.7818 45 1 3.9426 0.0707 4.5140 46 1 2.6661 -0.5706 3.4310 47 1 3.5869 -2.1042 5.4847 48 1 1.8287 -2.0727 5.1214 49 1 3.3723 -0.4617 7.2274 50 1 1.8540 -1.3856 7.4344 51 1 0.9891 -0.7457 9.8328 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025216769.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:01:04 Heat of formation + Delta-G solvation = 64.598949 kcal Electronic energy + Delta-G solvation = -33542.506745 eV Core-core repulsion = 29446.461185 eV Total energy + Delta-G solvation = -4096.045559 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.60612 -40.28786 -37.27244 -36.69481 -35.04180 -34.22749 -32.60668 -32.19343 -31.22898 -29.43916 -28.84846 -27.06201 -25.13524 -24.56577 -24.13788 -23.37674 -22.57081 -21.54717 -20.64662 -19.73402 -19.28482 -19.22454 -17.36986 -16.97387 -16.90679 -15.79551 -15.73198 -15.32125 -15.01274 -14.83084 -14.45253 -14.30350 -13.85451 -13.80340 -13.54473 -13.49203 -12.95179 -12.83581 -12.67250 -12.45620 -12.16978 -11.86443 -11.75369 -11.66569 -11.54561 -11.36732 -11.19209 -11.10567 -10.90546 -10.81195 -10.70339 -10.59840 -10.29351 -10.06306 -9.88336 -9.65297 -9.58770 -9.27671 -9.04703 -8.87461 -8.71650 -8.42256 -7.95401 -6.62716 -5.50937 -2.93224 1.05333 1.95110 2.41558 3.28772 3.44320 3.48442 3.50219 3.51529 3.89348 4.48167 4.57741 4.68555 4.92699 5.10022 5.16693 5.19945 5.28277 5.39556 5.41170 5.53135 5.60992 5.64517 5.67512 5.75461 5.78430 5.83914 5.94934 5.97067 6.00668 6.10499 6.13819 6.19643 6.22328 6.32145 6.39385 6.43074 6.53482 6.66144 6.69480 6.78275 6.84651 6.99437 7.05202 7.15972 7.31611 7.32482 7.62301 7.68909 7.79521 7.86131 8.03997 8.50811 8.61490 9.35770 9.98567 10.66067 11.49147 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013649 B = 0.004011 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.932728 B = 6978.434217 C = 8059.095929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.044 4.044 3 C 0.038 3.962 4 O -0.200 6.200 5 C 0.167 3.833 6 N -0.461 5.461 7 C -0.062 4.062 8 C 0.579 3.421 9 O -0.503 6.503 10 N -0.584 5.584 11 C 0.070 3.930 12 C -0.129 4.129 13 C -0.125 4.125 14 C -0.132 4.132 15 C 0.137 3.863 16 H 0.059 0.941 17 C 0.166 3.834 18 H 0.075 0.925 19 C -0.120 4.120 20 C -0.147 4.147 21 C 0.144 3.856 22 N -0.597 5.597 23 C -0.220 4.220 24 H 0.089 0.911 25 C -0.014 4.014 26 N -0.919 5.919 27 Si 0.905 3.095 28 H -0.291 1.291 29 H -0.282 1.282 30 H -0.292 1.292 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.051 0.949 34 H 0.081 0.919 35 H 0.118 0.882 36 H 0.252 0.748 37 H 0.142 0.858 38 H 0.053 0.947 39 H 0.059 0.941 40 H 0.063 0.937 41 H 0.057 0.943 42 H 0.055 0.945 43 H 0.058 0.942 44 H 0.115 0.885 45 H 0.039 0.961 46 H 0.089 0.911 47 H 0.047 0.953 48 H 0.056 0.944 49 H 0.002 0.998 50 H 0.111 0.889 51 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.051 6.761 -20.378 21.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.081 4.081 3 C -0.018 4.018 4 O -0.087 6.087 5 C -0.061 4.061 6 N -0.190 5.190 7 C -0.182 4.182 8 C 0.367 3.633 9 O -0.381 6.381 10 N -0.315 5.315 11 C -0.053 4.053 12 C -0.168 4.168 13 C -0.163 4.163 14 C -0.170 4.170 15 C 0.033 3.967 16 H 0.077 0.923 17 C 0.058 3.942 18 H 0.092 0.908 19 C -0.157 4.157 20 C -0.185 4.185 21 C 0.019 3.981 22 N -0.322 5.322 23 C -0.348 4.348 24 H 0.107 0.893 25 C -0.209 4.209 26 N -0.568 5.568 27 Si 0.736 3.264 28 H -0.218 1.218 29 H -0.208 1.208 30 H -0.218 1.218 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.070 0.930 34 H 0.099 0.901 35 H 0.136 0.864 36 H 0.267 0.733 37 H 0.159 0.841 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.133 0.867 45 H 0.058 0.942 46 H 0.107 0.893 47 H 0.066 0.934 48 H 0.074 0.926 49 H 0.020 0.980 50 H 0.129 0.871 51 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 3.884 6.666 -19.637 21.098 hybrid contribution -0.344 0.584 0.258 0.725 sum 3.540 7.250 -19.378 20.991 Atomic orbital electron populations 1.21699 0.93009 1.02959 1.02441 1.20370 0.97188 0.85271 1.05265 1.23805 0.99145 0.95658 0.83142 1.84352 1.63671 1.24179 1.36475 1.28137 0.99006 0.87203 0.91705 1.70417 1.18179 1.21218 1.09215 1.21887 1.09057 0.90891 0.96326 1.16856 0.80138 0.84342 0.82004 1.90812 1.44273 1.21703 1.81267 1.48014 1.63835 1.12673 1.07026 1.22751 0.97455 0.80492 1.04640 1.21876 1.00478 0.98243 0.96170 1.21657 1.00883 0.98335 0.95397 1.22490 0.98705 0.92064 1.03703 1.22281 0.99246 0.97510 0.77629 0.92265 1.21562 0.97388 0.88994 0.86211 0.90814 1.22995 0.96764 0.96235 0.99730 1.22981 0.99281 0.97116 0.99163 1.22055 0.94431 0.89030 0.92554 1.44761 1.49583 1.30791 1.07015 1.19407 1.17461 1.04891 0.93029 0.89341 1.24802 1.00497 0.97875 0.97752 1.69759 1.46707 1.23041 1.17317 0.86202 0.80613 0.78700 0.80859 1.21813 1.20773 1.21800 0.91072 0.91358 0.92989 0.90091 0.86351 0.73268 0.84126 0.92866 0.92220 0.91817 0.92456 0.92583 0.92304 0.86716 0.94214 0.89289 0.93406 0.92555 0.98004 0.87145 0.93995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.90 37.16 0.37 -1.09 16 2 C -0.04 -0.46 5.89 -27.88 -0.16 -0.62 16 3 C 0.04 0.46 6.69 -35.08 -0.23 0.22 16 4 O -0.20 -2.02 10.73 6.53 0.07 -1.95 16 5 C 0.17 1.40 13.19 51.96 0.69 2.08 16 6 N -0.46 -5.48 7.69 -11.48 -0.09 -5.57 16 7 C -0.06 -0.87 6.75 -83.02 -0.56 -1.43 16 8 C 0.58 9.71 7.29 -12.52 -0.09 9.62 16 9 O -0.50 -9.17 7.61 5.27 0.04 -9.13 16 10 N -0.58 -9.90 2.97 -166.48 -0.49 -10.39 16 11 C 0.07 1.00 6.21 -3.71 -0.02 0.98 16 12 C -0.13 -1.79 6.08 -26.61 -0.16 -1.95 16 13 C -0.12 -1.97 5.88 -26.69 -0.16 -2.13 16 14 C -0.13 -2.57 3.62 -26.61 -0.10 -2.67 16 15 C 0.14 2.70 2.66 -67.60 -0.18 2.52 16 16 H 0.06 1.23 7.82 -51.93 -0.41 0.82 16 17 C 0.17 3.65 2.31 -66.96 -0.15 3.50 16 18 H 0.07 1.78 5.90 -51.60 -0.30 1.48 16 19 C -0.12 -2.43 5.35 -24.90 -0.13 -2.56 16 20 C -0.15 -3.12 7.08 -24.58 -0.17 -3.30 16 21 C 0.14 3.68 6.04 -2.53 -0.02 3.66 16 22 N -0.60 -15.35 3.10 -162.58 -0.50 -15.85 16 23 C -0.22 -5.96 7.72 -15.06 -0.12 -6.08 16 24 H 0.09 2.31 5.03 -52.49 -0.26 2.04 16 25 C -0.01 -0.39 5.49 -17.43 -0.10 -0.49 16 26 N -0.92 -27.00 10.03 55.49 0.56 -26.45 16 27 Si 0.91 22.17 29.55 -169.99 -5.02 17.14 16 28 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 29 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 30 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 31 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.12 1.42 6.58 -51.93 -0.34 1.08 16 36 H 0.25 0.71 8.06 -52.49 -0.42 0.28 16 37 H 0.14 1.90 3.85 -72.91 -0.28 1.62 16 38 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.06 1.22 7.32 -51.93 -0.38 0.84 16 44 H 0.11 2.59 5.43 -51.93 -0.28 2.31 16 45 H 0.04 0.79 7.65 -51.93 -0.40 0.39 16 46 H 0.09 1.73 5.47 -52.65 -0.29 1.44 16 47 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 48 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 49 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 50 H 0.11 3.15 5.63 -51.93 -0.29 2.86 16 51 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 375.89 15.07 5.66 5.66 Total: -1.00 -31.47 375.89 -8.95 -40.42 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -7.87 Total: 5.83 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: -1.30 Total: 0.28 kcal Atomic # 7 Polarization: -57.73 SS G_CDS: -0.53 Total: -58.26 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: 0.11 Total: -11.08 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.47 -8.95 -40.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025216769.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.020 kcal (2) G-P(sol) polarization free energy of solvation -31.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds