Wall clock time and date at job start Wed Apr 1 2020 06:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50696 * 109.46778 * 2 1 4 4 O 1.34254 * 126.52837 * 270.15928 * 3 2 1 5 5 C 1.34046 * 108.23143 * 180.23322 * 4 3 2 6 6 N 1.29933 * 109.24310 * 359.76375 * 5 4 3 7 7 C 1.36068 * 108.47547 * 0.02562 * 6 5 4 8 8 C 1.47420 * 126.45077 * 179.97438 * 7 6 5 9 9 O 1.21608 * 120.00311 * 175.75768 * 8 7 6 10 10 N 1.34780 * 120.00037 * 355.76044 * 8 7 6 11 11 C 1.46931 * 120.62880 * 7.08496 * 10 8 7 12 12 C 1.53189 * 108.77692 * 126.39046 * 11 10 8 13 13 C 1.53039 * 109.31156 * 54.63661 * 12 11 10 14 14 C 1.53041 * 109.53600 * 298.63407 * 13 12 11 15 15 C 1.46924 * 120.63361 * 187.08451 * 10 8 7 16 16 H 1.08997 * 109.70516 * 113.75327 * 15 10 8 17 17 C 1.52997 * 109.58458 * 353.39551 * 15 10 8 18 18 H 1.09002 * 110.00080 * 313.95500 * 17 15 10 19 19 C 1.54313 * 109.77601 * 75.11412 * 17 15 10 20 20 C 1.55154 * 102.86246 * 141.88404 * 19 17 15 21 21 C 1.54909 * 101.58437 * 324.30498 * 20 19 17 22 22 N 1.47030 * 109.88217 * 192.86614 * 17 15 10 23 23 C 1.36930 * 125.64708 * 61.67248 * 22 17 15 24 24 H 1.07996 * 120.00646 * 356.01728 * 23 22 17 25 25 C 1.38817 * 119.99848 * 176.01666 * 23 22 17 26 26 N 1.31620 * 119.99586 * 0.02562 * 25 23 22 27 27 Si 1.86794 * 120.00240 * 180.02562 * 25 23 22 28 28 H 1.48502 * 109.47101 * 269.99935 * 27 25 23 29 29 H 1.48503 * 109.47337 * 29.99536 * 27 25 23 30 30 H 1.48503 * 109.47457 * 149.99814 * 27 25 23 31 31 H 1.09008 * 109.46743 * 179.97438 * 1 2 3 32 32 H 1.08989 * 109.47333 * 299.99930 * 1 2 3 33 33 H 1.09000 * 109.47117 * 60.00474 * 1 2 3 34 34 H 1.09000 * 109.46860 * 240.00146 * 2 1 3 35 35 H 1.08997 * 109.46702 * 119.99828 * 2 1 3 36 36 H 1.07999 * 125.38386 * 179.80894 * 5 4 3 37 37 H 1.08998 * 109.58502 * 6.59883 * 11 10 8 38 38 H 1.09000 * 109.58436 * 246.17980 * 11 10 8 39 39 H 1.08995 * 109.49896 * 294.68050 * 12 11 10 40 40 H 1.08999 * 109.51867 * 174.59969 * 12 11 10 41 41 H 1.09003 * 109.45981 * 178.61315 * 13 12 11 42 42 H 1.08999 * 109.45363 * 58.64584 * 13 12 11 43 43 H 1.09005 * 109.49721 * 301.41306 * 14 13 12 44 44 H 1.09003 * 109.52717 * 181.33635 * 14 13 12 45 45 H 1.08995 * 110.92149 * 23.47132 * 19 17 15 46 46 H 1.08996 * 110.73932 * 260.21498 * 19 17 15 47 47 H 1.09001 * 111.00757 * 206.22839 * 20 19 17 48 48 H 1.09004 * 111.00665 * 82.37753 * 20 19 17 49 49 H 1.09001 * 110.36441 * 278.17058 * 21 20 19 50 50 H 1.08997 * 110.46396 * 155.89472 * 21 20 19 51 51 H 0.97003 * 119.99772 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2958 2.1752 -1.0788 5 6 2.7259 3.3730 -0.6580 6 7 2.7348 3.3927 0.6412 7 6 2.3027 2.1844 1.0936 8 6 2.1593 1.7771 2.5032 9 8 1.6877 0.6903 2.7772 10 7 2.5510 2.6095 3.4883 11 6 2.9772 3.9821 3.1832 12 6 2.1627 4.9539 4.0428 13 6 2.3023 4.5652 5.5164 14 6 1.7500 3.1537 5.7280 15 6 2.5599 2.1615 4.8875 16 1 3.5854 2.1234 5.2548 17 6 1.9282 0.7714 4.9850 18 1 1.0033 0.7409 4.4090 19 6 2.9155 -0.2891 4.4540 20 6 2.6943 -1.4819 5.4212 21 6 2.4304 -0.7510 6.7613 22 7 1.6520 0.4452 6.3918 23 6 0.8073 1.1349 7.2199 24 1 0.3263 2.0368 6.8712 25 6 0.5691 0.6749 8.5078 26 7 1.1558 -0.4240 8.9330 27 14 -0.5837 1.6152 9.6373 28 1 0.1898 2.6225 10.4069 29 1 -1.6207 2.3020 8.8259 30 1 -1.2370 0.6690 10.5771 31 1 -0.3633 -1.0278 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 3.0183 4.1926 -1.2977 37 1 2.8027 4.1929 2.1282 38 1 4.0375 4.0943 3.4098 39 1 1.1135 4.9055 3.7516 40 1 2.5343 5.9682 3.8973 41 1 1.7435 5.2699 6.1324 42 1 3.3544 4.5898 5.8002 43 1 0.7046 3.1223 5.4209 44 1 1.8278 2.8862 6.7818 45 1 3.9426 0.0707 4.5140 46 1 2.6661 -0.5706 3.4310 47 1 3.5869 -2.1042 5.4847 48 1 1.8287 -2.0727 5.1214 49 1 3.3723 -0.4617 7.2274 50 1 1.8540 -1.3856 7.4344 51 1 0.9891 -0.7457 9.8328 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025216769.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:01:03 Heat of formation + Delta-G solvation = 44.982137 kcal Electronic energy + Delta-G solvation = -33543.357394 eV Core-core repulsion = 29446.461185 eV Total energy + Delta-G solvation = -4096.896208 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -44.43819 -41.70665 -38.85186 -38.18375 -35.97758 -35.10241 -34.48382 -33.65018 -32.74968 -30.99000 -30.17043 -28.64662 -26.71427 -26.27847 -25.16522 -24.32844 -23.90468 -22.71069 -22.07382 -21.32583 -20.97623 -20.49773 -18.94706 -18.20990 -17.77762 -17.36638 -17.10185 -16.64935 -16.33059 -16.00209 -15.76979 -15.67215 -15.37478 -15.27801 -14.78170 -14.59257 -14.29359 -14.22822 -13.99035 -13.74646 -13.64913 -13.51394 -13.31611 -13.17722 -12.83641 -12.76762 -12.66736 -12.49534 -12.38250 -12.31576 -12.03687 -12.01398 -11.98190 -11.76700 -11.59918 -11.33515 -11.02570 -10.90697 -10.65823 -10.63420 -10.13022 -9.86486 -9.35585 -8.70138 -7.64918 -5.09563 0.13484 1.11079 1.46031 1.47268 1.55523 1.61558 2.05946 2.30624 2.54765 3.10674 3.37852 3.61595 3.68607 3.81632 3.94718 4.06992 4.08405 4.14601 4.15185 4.26840 4.28448 4.32252 4.35688 4.42207 4.50533 4.58738 4.63440 4.68648 4.79357 4.84390 4.90739 4.96007 4.97478 5.00942 5.06064 5.08833 5.15168 5.19326 5.28692 5.30308 5.34620 5.40722 5.50696 5.57149 5.59531 5.72435 5.74757 5.91807 5.96335 6.38815 6.46111 6.64545 7.19198 7.28082 7.90538 8.56504 9.34331 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013649 B = 0.004011 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.932728 B = 6978.434217 C = 8059.095929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.044 4.044 3 C 0.045 3.955 4 O -0.196 6.196 5 C 0.199 3.801 6 N -0.489 5.489 7 C -0.090 4.090 8 C 0.573 3.427 9 O -0.528 6.528 10 N -0.588 5.588 11 C 0.068 3.932 12 C -0.122 4.122 13 C -0.120 4.120 14 C -0.124 4.124 15 C 0.148 3.852 16 H 0.047 0.953 17 C 0.166 3.834 18 H 0.054 0.946 19 C -0.106 4.106 20 C -0.135 4.135 21 C 0.146 3.854 22 N -0.613 5.613 23 C -0.217 4.217 24 H 0.094 0.906 25 C -0.073 4.073 26 N -0.950 5.950 27 Si 0.967 3.033 28 H -0.287 1.287 29 H -0.272 1.272 30 H -0.297 1.297 31 H 0.082 0.918 32 H 0.037 0.963 33 H 0.066 0.934 34 H 0.109 0.891 35 H 0.099 0.901 36 H 0.307 0.693 37 H 0.158 0.842 38 H 0.058 0.942 39 H 0.051 0.949 40 H 0.097 0.903 41 H 0.067 0.933 42 H 0.061 0.939 43 H 0.039 0.961 44 H 0.079 0.921 45 H 0.042 0.958 46 H 0.103 0.897 47 H 0.073 0.927 48 H 0.054 0.946 49 H -0.021 1.021 50 H 0.080 0.920 51 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.654 8.914 -23.859 25.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.081 4.081 3 C -0.012 4.012 4 O -0.083 6.083 5 C -0.029 4.029 6 N -0.218 5.218 7 C -0.208 4.208 8 C 0.363 3.637 9 O -0.407 6.407 10 N -0.320 5.320 11 C -0.054 4.054 12 C -0.160 4.160 13 C -0.157 4.157 14 C -0.162 4.162 15 C 0.043 3.957 16 H 0.065 0.935 17 C 0.061 3.939 18 H 0.072 0.928 19 C -0.143 4.143 20 C -0.173 4.173 21 C 0.021 3.979 22 N -0.338 5.338 23 C -0.346 4.346 24 H 0.111 0.889 25 C -0.265 4.265 26 N -0.602 5.602 27 Si 0.796 3.204 28 H -0.214 1.214 29 H -0.197 1.197 30 H -0.224 1.224 31 H 0.101 0.899 32 H 0.056 0.944 33 H 0.085 0.915 34 H 0.127 0.873 35 H 0.117 0.883 36 H 0.321 0.679 37 H 0.174 0.826 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.115 0.885 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.058 0.942 44 H 0.098 0.902 45 H 0.061 0.939 46 H 0.121 0.879 47 H 0.091 0.909 48 H 0.073 0.927 49 H -0.003 1.003 50 H 0.098 0.902 51 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 4.496 8.857 -23.152 25.193 hybrid contribution -0.509 -0.032 1.171 1.277 sum 3.987 8.825 -21.981 24.020 Atomic orbital electron populations 1.21646 0.92897 1.03475 1.01553 1.20383 0.97175 0.84871 1.05689 1.23904 0.98163 0.96023 0.83107 1.84403 1.63679 1.24658 1.35526 1.29348 0.95252 0.87143 0.91118 1.70218 1.19975 1.20502 1.11099 1.21428 1.11733 0.92654 0.94946 1.17256 0.79208 0.83979 0.83292 1.90762 1.45227 1.22701 1.82053 1.48013 1.64284 1.14014 1.05689 1.22994 0.97738 0.78864 1.05778 1.21843 1.00129 0.99858 0.94137 1.21608 1.00985 0.95728 0.97424 1.22232 0.97849 0.94821 1.01314 1.21785 0.97985 0.96121 0.79805 0.93493 1.21576 0.97281 0.91198 0.83894 0.92833 1.22914 0.96334 0.95006 1.00049 1.22862 1.00334 0.97395 0.96733 1.21850 0.92740 0.89083 0.94220 1.45028 1.49499 1.30971 1.08312 1.19737 1.16862 1.04731 0.93291 0.88862 1.25558 1.02517 0.99062 0.99323 1.70007 1.48397 1.24624 1.17140 0.85223 0.78893 0.77365 0.78876 1.21422 1.19702 1.22383 0.89946 0.94404 0.91545 0.87266 0.88272 0.67882 0.82572 0.92314 0.93062 0.88451 0.91464 0.92040 0.94189 0.90247 0.93890 0.87928 0.90853 0.92739 1.00296 0.90221 0.94795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.65 9.90 71.98 0.71 -1.94 16 2 C -0.04 -0.85 5.89 29.85 0.18 -0.67 16 3 C 0.04 0.97 6.69 25.19 0.17 1.14 16 4 O -0.20 -3.18 10.73 0.45 0.00 -3.17 16 5 C 0.20 2.41 13.19 130.52 1.72 4.13 16 6 N -0.49 -10.11 7.69 -305.15 -2.35 -12.46 16 7 C -0.09 -2.36 6.75 40.41 0.27 -2.09 16 8 C 0.57 19.15 7.29 86.66 0.63 19.78 16 9 O -0.53 -19.64 7.61 -4.06 -0.03 -19.68 16 10 N -0.59 -19.82 2.97 -798.88 -2.37 -22.19 16 11 C 0.07 1.82 6.21 86.36 0.54 2.36 16 12 C -0.12 -3.10 6.08 30.67 0.19 -2.91 16 13 C -0.12 -3.66 5.88 30.62 0.18 -3.48 16 14 C -0.12 -4.97 3.62 30.67 0.11 -4.86 16 15 C 0.15 5.95 2.66 44.97 0.12 6.07 16 16 H 0.05 2.00 7.82 -2.39 -0.02 1.98 16 17 C 0.17 7.61 2.31 45.34 0.10 7.72 16 18 H 0.05 2.71 5.90 -6.92 -0.04 2.67 16 19 C -0.11 -4.34 5.35 31.78 0.17 -4.17 16 20 C -0.13 -5.83 7.08 31.98 0.23 -5.61 16 21 C 0.15 7.83 6.04 86.86 0.52 8.36 16 22 N -0.61 -33.01 3.10 -668.27 -2.07 -35.08 16 23 C -0.22 -12.30 7.72 84.04 0.65 -11.65 16 24 H 0.09 5.07 5.03 -2.91 -0.01 5.06 16 25 C -0.07 -4.25 5.49 84.86 0.47 -3.78 16 26 N -0.95 -58.53 10.03 21.65 0.22 -58.31 16 27 Si 0.97 47.09 29.55 68.60 2.03 49.12 16 28 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 29 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 30 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 31 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 32 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.10 2.34 6.58 -2.39 -0.02 2.32 16 36 H 0.31 -0.28 8.06 -2.91 -0.02 -0.30 16 37 H 0.16 3.82 3.85 -43.80 -0.17 3.65 16 38 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.05 1.40 8.14 -2.39 -0.02 1.39 16 40 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.04 1.71 7.32 -2.38 -0.02 1.70 16 44 H 0.08 3.74 5.43 -2.39 -0.01 3.73 16 45 H 0.04 1.72 7.65 -2.39 -0.02 1.70 16 46 H 0.10 4.00 5.47 -23.50 -0.13 3.88 16 47 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 48 H 0.05 2.36 8.14 -2.38 -0.02 2.35 16 49 H -0.02 -1.19 8.14 -2.39 -0.02 -1.21 16 50 H 0.08 4.81 5.63 -2.39 -0.01 4.79 16 51 H 0.24 14.56 8.31 -92.71 -0.77 13.79 16 Total: -1.00 -73.18 375.89 3.03 -70.15 By element: Atomic # 1 Polarization: 22.58 SS G_CDS: 0.64 Total: 23.23 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: 6.96 Total: 8.40 kcal Atomic # 7 Polarization: -121.47 SS G_CDS: -6.58 Total: -128.04 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: -0.03 Total: -22.85 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.12 kcal Total: -73.18 3.03 -70.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025216769.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.135 kcal (2) G-P(sol) polarization free energy of solvation -73.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds